| Acc# | Gene | Locus | DB | Organism | Product | Score | E-value | Identities | Positives | Gaps |
|---|---|---|---|---|---|---|---|---|---|---|
| P13433 | RPO41 | RPOM_YEAST | SP | Saccharomyces cerevisiae (Baker's yeast) | DNA-directed RNA polymerase, mitochondrial precursor (EC 2.7.7.6). | 381 | e-104 | 242/755 (32%) | 380/755 (50%) | 45/755 (5%) |
| O13993 | SPAC26H5.12 | RPOM_SCHPO | SP | Schizosaccharomyces pombe (Fission yeast) | DNA-directed RNA polymerase, mitochondrial precursor (EC 2.7.7.6). | 320 | 6e-86 | 209/648 (32%) | 307/648 (47%) | 29/648 (4%) |
| Q8SBD3 | RPOT2 | TrEMBL | Physcomitrella patens (Moss) | Single-subunit RNA polymerase. | 320 | 6e-86 | 201/621 (32%) | 306/621 (49%) | 28/621 (4%) | |
| Q8J0Z4 | TrEMBL | Cryptococcus neoformans var. grubii | RPO41. | 319 | 2e-85 | 204/635 (32%) | 310/635 (48%) | 41/635 (6%) | ||
| Q8SBD4 | RPOT1 | TrEMBL | Physcomitrella patens (Moss) | Single-subunit RNA polymerase. | 319 | 1e-85 | 222/732 (30%) | 337/732 (46%) | 35/732 (4%) | |
| Q8L6F8 | RPOT2 | TrEMBL | Physcomitrella patens (Moss) | RNA polymerase. | 319 | 1e-85 | 200/621 (32%) | 307/621 (49%) | 28/621 (4%) | |
| Q8J122 | TrEMBL | Cryptococcus neoformans var. grubii | RPO41. | 319 | 1e-85 | 204/635 (32%) | 311/635 (48%) | 41/635 (6%) | ||
| Q8L6F9 | RPOT1 | TrEMBL | Physcomitrella patens (Moss) | RNA polymerase. | 318 | 3e-85 | 221/732 (30%) | 338/732 (46%) | 35/732 (4%) | |
| Q8J0Y5 | TrEMBL | Cryptococcus neoformans var. neoformans | RPO41. | 318 | 2e-85 | 204/635 (32%) | 309/635 (48%) | 41/635 (6%) | ||
| Q8J0W4 | TrEMBL | Cryptococcus neoformans var. neoformans | RPO41. | 318 | 2e-85 | 204/635 (32%) | 309/635 (48%) | 41/635 (6%) | ||
| P92969 | RPOMT | RPOM_ARATH | SP | Arabidopsis thaliana (Mouse-ear cress) | DNA-directed RNA polymerase, mitochondrial precursor (EC 2.7.7.6). | 316 | 1e-84 | 221/729 (30%) | 345/729 (47%) | 34/729 (4%) |
| Q8L6J7 | RPOT2-TOM | TrEMBL | Nicotiana tabacum (Common tobacco) | Mitochondrial and chloroplast RNA polymerase. | 314 | 6e-84 | 225/708 (31%) | 338/708 (47%) | 35/708 (4%) | |
| Q8L4F8 | RPOT3 | RPO3_NICSY | SP | Nicotiana tabacum (Common tobacco) | DNA-directed RNA polymerase 3, chloroplast precursor (EC 2.7.7.6) (T7 bacteriophage-type single subunit RNA polymerase 3) (NsRpoT-C). | 314 | 4e-84 | 208/631 (32%) | 303/631 (48%) | 29/631 (4%) |
| Q8L6K2 | RPOT1-TOM | TrEMBL | Nicotiana tabacum (Common tobacco) | Phage-type RNA polymerase. | 313 | 1e-83 | 205/641 (31%) | 308/641 (48%) | 31/641 (4%) | |
| Q41524 | TrEMBL | Triticum aestivum (Wheat) | Single-subunit RNA polymerase C. | 311 | 4e-83 | 205/688 (29%) | 326/688 (47%) | 28/688 (4%) | ||
| Q8L6J5 | NICTARPOT1-TOM | TrEMBL | Nicotiana tabacum (Common tobacco) | Mitochondrial RNA polymerase (Fragment). | 311 | 4e-83 | 204/641 (31%) | 308/641 (48%) | 31/641 (4%) | |
| P38671 | CYT-5 | RPOM_NEUCR | SP | Neurospora crassa | DNA-directed RNA polymerase, mitochondrial precursor (EC 2.7.7.6). | 309 | 1e-82 | 213/692 (30%) | 329/692 (47%) | 65/692 (9%) |
| Q93Y94 | RPOT1 | RPO1_NICSY | SP | Nicotiana sylvestris (Wood tobacco) | DNA-directed RNA polymerase 1, mitochondrial precursor (EC 2.7.7.6) (T7 bacteriophage-type single subunit RNA polymerase 1) (NsRpoT-A). | 309 | 1e-82 | 201/634 (31%) | 305/634 (48%) | 31/634 (4%) |
| Q8VWF8 | RPOT2 | RPO2_NICSY | SP | Nicotiana sylvestris (Wood tobacco) | DNA-directed RNA polymerase 2, chloroplast/mitochondrial precursor (EC 2.7.7.6) (T7 bacteriophage-type single subunit RNA polymerase 2) (NsRpoT-B). | 307 | 5e-82 | 221/708 (31%) | 335/708 (47%) | 35/708 (4%) |
| Q84LK6 | RPOT1 | TrEMBL | Oryza sativa (japonica cultivar-group) | RpoT1. | 306 | 9e-82 | 211/694 (30%) | 320/694 (46%) | 34/694 (4%) | |
| Q9MQV1 | TrEMBL | Triticum aestivum (Wheat) | Single-subunit RNA polymerase G. | 305 | 3e-81 | 210/697 (30%) | 319/697 (45%) | 37/697 (5%) | ||
| Q8L6J6 | RPOT3-TOM | TrEMBL | Nicotiana tabacum (Common tobacco) | Chloroplast RNA polymerase. | 305 | 2e-81 | 208/632 (32%) | 299/632 (47%) | 30/632 (4%) | |
| Q95NZ8 | RPMA | TrEMBL | Dictyostelium discoideum (Slime mold) | T3/T7 bacteriophage-like mitochondrial RNA polymerase (DNA-dependent RNA polymerase RpmA). | 305 | 2e-81 | 208/620 (33%) | 297/620 (47%) | 30/620 (4%) | |
| Q9LFV6 | F14F8_80 | TrEMBL | Arabidopsis thaliana (Mouse-ear cress) | DNA-directed RNA polymerase (Mitochondrial) (Phage-type RNA polymerase rpoT2). | 304 | 6e-81 | 218/690 (31%) | 334/690 (48%) | 36/690 (5%) | |
| Q84LK5 | RPOT2 | TrEMBL | Oryza sativa (japonica cultivar-group) | RpoT2. | 303 | 1e-80 | 202/696 (29%) | 325/696 (46%) | 36/696 (5%) | |
| O23644 | TrEMBL | Arabidopsis thaliana (Mouse-ear cress) | DNA-directed RNA polymerase precursor. | 303 | 8e-81 | 218/690 (31%) | 334/690 (48%) | 36/690 (5%) | ||
| Q9PTG7 | MTRPO | TrEMBL | Xenopus laevis (African clawed frog) | RNA polymerase precursor. | 302 | 2e-80 | 203/622 (32%) | 308/622 (49%) | 39/622 (6%) | |
| O24600 | RPOPT | RPOT_ARATH | SP | Arabidopsis thaliana (Mouse-ear cress) | DNA-directed RNA polymerase, chloroplast precursor (EC 2.7.7.6). | 301 | 5e-80 | 199/599 (33%) | 286/599 (47%) | 30/599 (5%) |
| O82725 | RPOT | TrEMBL | Zea mays (Maize) | DNA directed RNA polymerase (EC 2.7.7.6). | 294 | 6e-78 | 205/688 (29%) | 318/688 (46%) | 28/688 (4%) | |
| Q9SYW4 | RPOT2 | TrEMBL | Zea mays (Maize) | T7-like RNA polymerase. | 293 | 8e-78 | 205/688 (29%) | 318/688 (46%) | 28/688 (4%) |
Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- RNA_pol DNA-dependent RNA polymerase 361.2 1.1e-104 1 DUF335 Putative metallopeptidase (SprT family) -91.4 8.7 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- DUF335 1/1 1114 1190 .. 1 155 [] -91.4 8.7 RNA_pol 1/1 691 1218 .] 1 564 [] 361.2 1.1e-104
CDS Sequence
ATGCAAATAC TTAGACTACT GGGAAGACAC TTATGTAATA TAACACTAAA ATGCTTGAAA AGACAAATAA CTACATTATC TGTACCAGAT CGATCTGTGA GTGATATCAC CTCATCGATA TTTGAAGTTA CCAAAGATAT CAATCATGGA CCAAGAAGTT CAACAAAAGT CATGAAATAT GTCAGTAGCT TCTATCAAAA TGTTAAAATC ATGAATCTTG AACAGATTTC TCGAATTTTA ACAGATATAG CGAATGATAT GTTGAAACGG GATGATAATG TGATAAATAA TTGTGAATTT TATTTCAATT GTTTAAAGAT TGGATTGAAC TGTTTTTCAG AATCAACATC TACTGAAGCA TTATATTTAC TAAGAAATAA TATTGAAGAT TATAGGAAAG TGATAGTGAA ATTTAGAGGA CTTGGAACAG TGCCTGAAAC AGTGCCGTAT TCAGAAATGA AAAATATTCA GAACTTGTTT CTAAAAACAA TATTACATCT TTACTCAGTG TCAAAACAAT CTGGGAAATC AAGAATTATC ACCAACCCGA TTACGGAATA CTTTTTACAT AATTTAAAAA GTTTTGACAC CGATATCCAA GAGTTTGCCA ATGAGTTGAC ACAAGAAGAA AGTTTGCAAA AAGCATTGAC AGAAATTTGC TTCTCAAAGC AAATTAGTTT ACCAGTTACA AAAACATCGA TAGAGAGAGA ACCATACCAT CTGGTGTCCA TTGACCAATA CTTGGATGAG TATGGAGGGA TAGACTATGA AAACATTTGT AAATATATAT CAGATTACAA ATTCACATGG CGTGGTCAAT ATATCAATGA CAAATTATTC AATTATTATG ATACACTTTC AACTGAAGAG AAATCACAAT TCATGGAAGC ATACTTGGAT TTTAACAAGT CGAAGGAATT AATAATAGAA AAGTATACCA ATAGAATTGT GCATGTTTCA CTGGAAGCAT CTAAACAATT TGAAAAATCT TTCAAATTTG GCATGAGTGA AAAGAATTTG ATTCACAAGT GGATAACAGA CACAACTGAA CAGATTGAAA AAATATTAGA AATTGAAACC AGTTTGTCAA ATGAAGAAGT TATTATTCAT CACTTTAAGC CATTTTTGGA AACAGTGACA ATTCAATCGA TTATAAATTA TATTATTTTT TCAATTTTAG GCTCCCCCGA TGGGAAATTA ACCACAGTTA TAGAAAAGAT GAAATATTCG TTTCCTAGTG TGTTATCACA ACATGCTTCT CCAAACTTGA AAGGTGAAGT ATTCCAATAT ATAAACGATG ATGCTTATAT TAAATTGACC CATCAATTGG TCAAGTTGAT AATAGAGAAT TGCAAAGTCC CCATCACAAG TAAACAGATG GAACAACTTC AGAATTCTTT AAAACTAGAA AACAAAGAAA TTGCTGATCA ATTCTTAATC TCCAGTGGTG GTAATGATGA TGAATATCTT GCCTTTTGTA AAGAAACAAA ACGAATAACT AATACAAAAA ACAAAACTTA TATTATAGTG AAAATGCATC CCTATATAGA ATTAAAACTA CAATCTTTGA AGTTGGGGAC TCATTTACAT TATTTGCCAA TGTTACATCC ACCAAAACCT TGGGTGAATC CTCAAAGTGG TGGGTATCTA ACAATAAAAA CAAGTTTTGT GTCAACAAAT GATTCCATTC AAGTGGAATT ATTGAACAGG GCAGGTGTTA GGGGTCAATT GGATAATGCA TATTCATGTC TTGATCAAAT GGGGAATACC GCTTGGGCGA TAAACCCATT AATGTTGGAT GTTTTCAATA AATTAATGGG AAACCCCGAT GGGTTCTTAA GTATCCCGCC ACTGGTACCA GATGAAACTT TACCACAGAA AACCAAAACA GAATTGAAAA GTCTTCGAAT AACTTTTGAA ATAATGAATA AACTCGCCAA TGCCTTTGGT GAAAATGGAG ATTTGTTATA CCATTGCTAC AGTTTAGATT TTAGAGGTAG AATATACCCT TTTTCTCCCT TGACTCATTA TGGAGGTGAT TTAGCAAGAT CTTTATTTAT GTTTTGGTAT AGTGAGCCAT TAGGACCCAA TGGATTTTAT TGGATAAAAT ATCAATTAGC TTCATTGTTT GGACAAAAAA ATTGTTTAGA GTTTTATGAG GAAAATTATG ATAACATTAT TGATTCAGCC CGTAATCCAA TGACGGGGAA GAAATGGTGG ATGAAAGCTG ATAAACCATT TTCAGCTTTG GCAGTTTGTT TTGAAATCAA AAAAATATTA GATTATAGGA TGTCTGGTGG TAAGATTGAA GATTATAAAT GCCGTCTTCC GATTCATCAA GATGGTTCTT GTAACGGGTT ACAGCATTAT GCAGGTTTAG CTGCTGATGA AACTGGTGGA GCAGCCGTTA ACTTGATTAG ACTGGAAACA AAGCAAGATG TGTATACCAA AGTTTTAGAA ATTGTGAAAA AGAAAATTGA ACAAGACATA CTGGAACAGA ATCTCGGGAC AGTAAATTTG GAAACTGCTA AATTTTTTTT ACCGATTTTA AATCGAAAAT TAGTGAAACG TCCAGTGATG ACAACGGTAT ATGGGGTCAC TTTAGCTGGT GCTAGCTCAC AAATAATGCA AACTATCAAA GAGATTGTTG AAGATCATCG TACCAATCCT TCCAAAACCA CTTTTAGTAA CGAGACATTA CATAAATTAA AATCCGTTCA ACTAACACAA ACATCGTATC TTGCCAAAAA GATTTTGGAT TCTATTGATG AACTATTTGT CCATGCCAAA CAAATTGAGA AATGGTTATT ACAAAATACA AAACGGATTC TTACTTCATA CAATATAAAA ACCATAGACC ACTTGCTCAA CAACAATCCA AGCTCATTTG AAACTATTTT CACTACACCA ATGAGTTTTT TCCCAATGAG TTGGATATCA CCATGTGGGC TCCCAGTGAT TCAAGCATAT CGGAAAATCC CCACAAGTAG ATTTAATGGT GCCATAGGAA AGACAACTTG GAATAATTCC AACAAATTAT CACCAATGGA TAGACGTAAA CATGAATTAG GAATTGCACC AAATTTTATT CATTCATTAG ATGCGGCCCA TTTGTTTATG ACATGTGACA GTGCAAATAA AGCTGGTCTT ACCTTTAGTG CAATTCATGA TTCGTATTGG ACTCATCCTA ATAATGTTGA AAAGTTGTCA AAAATATTGA GAGAACAATT TGTTGAGTTA TATTCAATGG ACTATTTGAA ATATGTACGA CAAGATTTTA TAAATCAAGT GAAAAATTCT TATCAATTGG TTTATTTTAA AAAAAAAGAT TATCCTGGAT TAGCGAATAA AATTGCTGAA ATACGGAAAC ATTACCCAGA AAGAAAGAAA CCTCATAAAC TTGCTTTTGA ATTAAGAGAA ATGACAGAGC AGGGTGAAGA ACATATTATG AGAAAATTAT ATCAACGGTA CAAACCAAGA GTGTTTCACA TTGTTTCCGA CAAGTGTTAC GAATATAGAA ATGATACTGT TGTTCAACCC GAACCAAAAT GTAAGGGGAT GATGGAAATA TTTGTCCCTG TTCTGATTAT CAATGTGCCA CCAAAAGGGA ATTTAGACAT ATCAAAAGTA TTAGATAGTC CATACTTTTT TTCATAA
AA Sequence
MQILRLLGRH LCNITLKCLK RQITTLSVPD RSVSDITSSI FEVTKDINHG PRSSTKVMKY VSSFYQNVKI MNLEQISRIL TDIANDMLKR DDNVINNCEF YFNCLKIGLN CFSESTSTEA LYLLRNNIED YRKVIVKFRG LGTVPETVPY SEMKNIQNLF LKTILHLYSV SKQSGKSRII TNPITEYFLH NLKSFDTDIQ EFANELTQEE SLQKALTEIC FSKQISLPVT KTSIEREPYH LVSIDQYLDE YGGIDYENIC KYISDYKFTW RGQYINDKLF NYYDTLSTEE KSQFMEAYLD FNKSKELIIE KYTNRIVHVS LEASKQFEKS FKFGMSEKNL IHKWITDTTE QIEKILEIET SLSNEEVIIH HFKPFLETVT IQSIINYIIF SILGSPDGKL TTVIEKMKYS FPSVLSQHAS PNLKGEVFQY INDDAYIKLT HQLVKLIIEN CKVPITSKQM EQLQNSLKLE NKEIADQFLI SSGGNDDEYL AFCKETKRIT NTKNKTYIIV KMHPYIELKL QSLKLGTHLH YLPMLHPPKP WVNPQSGGYL TIKTSFVSTN DSIQVELLNR AGVRGQLDNA YSCLDQMGNT AWAINPLMLD VFNKLMGNPD GFLSIPPLVP DETLPQKTKT ELKSLRITFE IMNKLANAFG ENGDLLYHCY SLDFRGRIYP FSPLTHYGGD LARSLFMFWY SEPLGPNGFY WIKYQLASLF GQKNCLEFYE ENYDNIIDSA RNPMTGKKWW MKADKPFSAL AVCFEIKKIL DYRMSGGKIE DYKCRLPIHQ DGSCNGLQHY AGLAADETGG AAVNLIRLET KQDVYTKVLE IVKKKIEQDI LEQNLGTVNL ETAKFFLPIL NRKLVKRPVM TTVYGVTLAG ASSQIMQTIK EIVEDHRTNP SKTTFSNETL HKLKSVQLTQ TSYLAKKILD SIDELFVHAK QIEKWLLQNT KRILTSYNIK TIDHLLNNNP SSFETIFTTP MSFFPMSWIS PCGLPVIQAY RKIPTSRFNG AIGKTTWNNS NKLSPMDRRK HELGIAPNFI HSLDAAHLFM TCDSANKAGL TFSAIHDSYW THPNNVEKLS KILREQFVEL YSMDYLKYVR QDFINQVKNS YQLVYFKKKD YPGLANKIAE IRKHYPERKK PHKLAFELRE MTEQGEEHIM RKLYQRYKPR VFHIVSDKCY EYRNDTVVQP EPKCKGMMEI FVPVLIINVP PKGNLDISKV LDSPYFFS*