| Acc# | Gene | Locus | DB | Organism | Product | Score | E-value | Identities | Positives | Gaps |
|---|---|---|---|---|---|---|---|---|---|---|
| Q99394 | TRS33 | TR33_YEAST | SP | Saccharomyces cerevisiae (Baker's yeast) | Transport protein particle 33 kDa subunit (TRAPP 33 kDa subunit). | 117 | 9e-26 | 67/191 (35%) | 112/191 (58%) | 15/191 (7%) |
| Q7ZXX6 | TrEMBL | Xenopus laevis (African clawed frog) | Similar to RIKEN cDNA 5830498C14 gene. | 107 | 1e-22 | 56/131 (42%) | 84/131 (64%) | |||
| Q9CAW4 | T9J14.5 | TrEMBL | Arabidopsis thaliana (Mouse-ear cress) | Hypothetical protein. | 104 | 1e-21 | 52/136 (38%) | 81/136 (59%) | 12/136 (8%) | |
| Q9D289 | 5830498C14RIK | TrEMBL | Mus musculus (Mouse) | 5830498C14Rik protein (RIKEN cDNA 5830498C14 gene) (Weakly similar to RH37427P). | 103 | 2e-21 | 54/132 (40%) | 83/132 (62%) | ||
| Q86SZ2 | TrEMBL | Homo sapiens (Human) | Human full-length cDNA clone CS0DK012YE11 of HeLa cells of Homo sapiens (Human). | 102 | 4e-21 | 52/132 (39%) | 84/132 (63%) | |||
| Q09784 | SPAC13G6.05C | YA95_SCHPO | SP | Schizosaccharomyces pombe (Fission yeast) | Hypothetical protein C13G6.05c in chromosome I. | 97.1 | 2e-19 | 64/200 (32%) | 99/200 (49%) | |
| Q9BQ45 | TrEMBL | Homo sapiens (Human) | Hypothetical protein. | 92.8 | 3e-18 | 48/123 (39%) | 79/123 (64%) | |||
| O75865 | TrEMBL | Homo sapiens (Human) | R32611_2 (Fragment). | 92.8 | 3e-18 | 48/123 (39%) | 79/123 (64%) | |||
| Q86U35 | TrEMBL | Homo sapiens (Human) | Human full-length cDNA clone CS0DM009YC24 of fetal liver of Homo sapiens (Human). | 91.3 | 9e-18 | 42/92 (45%) | 64/92 (69%) | |||
| Q9XU81 | K08H10.9 | TrEMBL | Caenorhabditis elegans | K08H10.9 protein. | 90.5 | 2e-17 | 52/171 (30%) | 91/171 (53%) | 5/171 (2%) | |
| Q9VF82 | CG6196 | TrEMBL | Drosophila melanogaster (Fruit fly) | CG6196 protein (RH37427p). | 88.2 | 8e-17 | 47/128 (36%) | 77/128 (60%) | ||
| Q9CQ27 | 1810073E21RIK | TrEMBL | Mus musculus (Mouse) | 1810073E21Rik protein. | 86.7 | 2e-16 | 43/123 (34%) | 73/123 (59%) | ||
| Q8C2C8 | 1810073E21RIK | TrEMBL | Mus musculus (Mouse) | Hypothetical protein. | 86.3 | 3e-16 | 43/123 (34%) | 73/123 (59%) | ||
| Q9D8H6 | 1810073E21RIK | TrEMBL | Mus musculus (Mouse) | 1810073E21Rik protein. | 82.8 | 3e-15 | 42/123 (34%) | 72/123 (58%) | ||
| Q9P092 | TrEMBL | Homo sapiens (Human) | HSPC289 (Fragment). | 75.1 | 7e-13 | 41/124 (33%) | 69/124 (55%) | 1/124 (0%) | ||
| Q86X35 | TrEMBL | Homo sapiens (Human) | Similar to RIKEN cDNA 5830498C14 gene. | 72.0 | 6e-12 | 42/132 (31%) | 66/132 (50%) | |||
| Q8ICI4 | MAL6P1.240 | TrEMBL | Plasmodium falciparum (isolate 3D7) | Hypothetical protein. | 67.8 | 1e-10 | 41/131 (31%) | 78/131 (59%) | 3/131 (2%) | |
| Q9XFA1 | SPP30 | TrEMBL | Solanum chacoense (Chaco potato) | SPP30. | 54.3 | 1e-06 | 35/119 (29%) | 61/119 (51%) | 3/119 (2%) | |
| Q9FGU1 | TrEMBL | Arabidopsis thaliana (Mouse-ear cress) | Gb|AAD34459.1 (SPP30-like protein) (At5g58030). | 51.6 | 8e-06 | 34/119 (28%) | 60/119 (50%) | 3/119 (2%) | ||
| P15847 | A412_PLAFA | SP | Plasmodium falciparum | 41-2 protein antigen precursor. | 51.2 | 1e-05 | 39/159 (24%) | 75/159 (47%) | 10/159 (6%) |
Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- TRAPP_Bet3 Transport protein particle (TRAPP) compone 129.3 6.9e-35 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- TRAPP_Bet3 1/1 36 231 .. 1 193 [] 129.3 6.9e-35
CDS Sequence
atgacagaag atatattgga caaacaaaca tatgttagca gcacaagtct acaatttttg cttcaagagt tagtaccgac ctccattcgt gtttcgcata aacttttaga tccaactgtc tcgacgtttg cagaagagtc tgaacaaacc agaatagatc aacaactatc aacaattaaa agtgatttcc ctggtacagt caatgtcttg gattcaccgt tgttagacaa tgatgaagtc accattagag tggaatcata tggttacagt ttgggattga aaatagctga agtgttacta tataaaagtt cgggcaataa ggtggtggat attttggaca ttatgaaatt cgtgtgtcga gacgtttgga aatgtttata taacaaacaa atggataatt taagaaccaa ccaccgagga acatttgttt tggttgataa caactacaaa ttgatttctc tgcttaatag ttctaaaggt atgcaagaga cgttgagcaa ggcaaaagta tatttatggt tcccctgtgg tgtaatacga ggaatattga tgagttttgg tattgaagct aatgtttcag ctgaaataac ccaatttcca gctgtagtat ttaatatcca tacgagcata aataattag
AA Sequence
MTEDILDKQT YVSSTSLQFL LQELVPTSIR VSHKLLDPTV STFAEESEQT RIDQQLSTIK SDFPGTVNVL DSPLLDNDEV TIRVESYGYS LGLKIAEVLL YKSSGNKVVD ILDIMKFVCR DVWKCLYNKQ MDNLRTNHRG TFVLVDNNYK LISLLNSSKG MQETLSKAKV YLWFPCGVIR GILMSFGIEA NVSAEITQFP AVVFNIHTSI NN*