| Acc# | Gene | Locus | DB | Organism | Product | Score | E-value | Identities | Positives | Gaps |
|---|---|---|---|---|---|---|---|---|---|---|
| P46463 | PEX1 | PEX1_PICPA | SP | Pichia pastoris (Yeast) | Peroxisome biosynthesis protein PAS1 (Peroxin-1). | 850 | 0.0 | 498/1172 (42%) | 692/1172 (59%) | 81/1172 (6%) |
| Q9UVU6 | PEX1 | TrEMBL | Pichia angusta (Yeast) (Hansenula polymorpha) | Peroxin-1. | 758 | 0.0 | 461/1133 (40%) | 649/1133 (57%) | 42/1133 (3%) | |
| Q9UV06 | PEX1 | TrEMBL | Yarrowia lipolytica (Candida lipolytica) | Peroxisome assembly protein Pex1p. | 693 | 0.0 | 433/1077 (40%) | 609/1077 (56%) | 53/1077 (4%) | |
| Q9HG04 | PEX1 | TrEMBL | Penicillium chrysogenum | Peroxin-1. | 582 | e-165 | 411/1232 (33%) | 609/1232 (49%) | 146/1232 (11%) | |
| P24004 | PEX1 | PEX1_YEAST | SP | Saccharomyces cerevisiae (Baker's yeast) | Peroxisome biosynthesis protein PAS1 (Peroxin-1). | 533 | e-150 | 307/676 (45%) | 408/676 (60%) | 25/676 (3%) |
| O43933 | PEX1 | PEX1_HUMAN | SP | Homo sapiens (Human) | Peroxisome biogenesis factor 1 (Peroxin-1) (Peroxisome biogenesis disorder protein 1). | 374 | e-102 | 205/478 (42%) | 288/478 (60%) | 13/478 (2%) |
| Q9FQ60 | PEX1 | TrEMBL | Arabidopsis thaliana (Mouse-ear cress) | Peroxisome biogenesis protein PEX1 (Fragment). | 328 | 3e-88 | 207/542 (38%) | 296/542 (54%) | 13/542 (2%) | |
| O74941 | SPCC553.03 | TrEMBL | Schizosaccharomyces pombe (Fission yeast) | Putative peroxisome biosynthesis protein, AAA family ATPases. | 328 | 2e-88 | 214/578 (37%) | 304/578 (52%) | 6/578 (1%) | |
| Q9FNP1 | TrEMBL | Arabidopsis thaliana (Mouse-ear cress) | Similarity to ATPase. | 327 | 8e-88 | 196/474 (41%) | 273/474 (57%) | 13/474 (2%) | ||
| Q9CU85 | PEX1 | TrEMBL | Mus musculus (Mouse) | 5430414H02Rik protein (Fragment). | 315 | 3e-84 | 155/245 (63%) | 194/245 (79%) | 1/245 (0%) | |
| Q9VUC7 | L(3)70DA | TrEMBL | Drosophila melanogaster (Fruit fly) | CG6760 protein (LD43687p). | 276 | 2e-72 | 181/537 (33%) | 284/537 (52%) | 23/537 (4%) | |
| Q9Y090 | L(3)70DA | TrEMBL | Drosophila melanogaster (Fruit fly) | L(3)70DA. | 276 | 2e-72 | 181/537 (33%) | 284/537 (52%) | 23/537 (4%) | |
| Q58556 | MJ1156 | YB56_METJA | SP | Methanococcus jannaschii | Cell division cycle protein 48 homolog MJ1156. | 276 | 9e-73 | 206/628 (32%) | 301/628 (47%) | 48/628 (7%) |
| O28972 | AF1297 | TrEMBL | Archaeoglobus fulgidus | Cell division control protein 48 (CDC48-1). | 269 | 1e-70 | 167/467 (35%) | 256/467 (54%) | 5/467 (1%) | |
| Q9YC86 | APE1367 | TrEMBL | Aeropyrum pernix | 726AA long hypothetical transitional endoplasmic reticulum ATPase. | 268 | 3e-70 | 167/475 (35%) | 255/475 (53%) | 8/475 (1%) | |
| Q97ZZ9 | SSO0421 | TrEMBL | Sulfolobus solfataricus | AAA family ATPase. | 266 | 1e-69 | 183/582 (31%) | 292/582 (50%) | 8/582 (1%) | |
| Q8SSJ5 | ECU01_1230 | TrEMBL | Encephalitozoon cuniculi | Protein of the CDC48/PAS1/SEC28 family of ATPases. | 265 | 4e-69 | 167/480 (34%) | 257/480 (53%) | 8/480 (1%) | |
| Q9Y910 | APE2474 | TrEMBL | Aeropyrum pernix | 699AA long hypothetical transitional endoplasmic reticulum ATPase. | 264 | 5e-69 | 170/480 (35%) | 257/480 (53%) | 8/480 (1%) | |
| P54609 | CDC48A | C48A_ARATH | SP | Arabidopsis thaliana (Mouse-ear cress) | Cell division control protein 48 homolog A (AtCDC48a). | 263 | 1e-68 | 191/685 (27%) | 324/685 (47%) | 58/685 (8%) |
| Q976H7 | ST0209 | TrEMBL | Sulfolobus tokodaii | Putative SAV protein. | 263 | 1e-68 | 168/481 (34%) | 256/481 (53%) | 9/481 (1%) | |
| Q96372 | CAFP | CC48_CAPAN | SP | Capsicum annuum (Bell pepper) | Cell division cycle protein 48 homolog. | 262 | 2e-68 | 192/688 (27%) | 323/688 (46%) | 57/688 (8%) |
| P90532 | CDCD | TrEMBL | Dictyostelium discoideum (Slime mold) | Cell division cycle protein 48. | 262 | 2e-68 | 185/638 (28%) | 306/638 (47%) | 48/638 (7%) | |
| Q975P4 | ST0376 | TrEMBL | Sulfolobus tokodaii | Putative SAV protein. | 262 | 2e-68 | 177/581 (30%) | 291/581 (50%) | 7/581 (1%) | |
| Q9LZF6 | CDC48E | C48E_ARATH | SP | Arabidopsis thaliana (Mouse-ear cress) | Cell division control protein 48 homolog E (AtCDC48e) (Transitional endoplasmic reticulum ATPase E). | 262 | 2e-68 | 181/629 (28%) | 305/629 (48%) | 47/629 (7%) |
| Q9SCN8 | CDC48D | C48D_ARATH | SP | Arabidopsis thaliana (Mouse-ear cress) | Putative cell division control protein 48 homolog D (AtCDC48d) (Transitional endoplasmic reticulum ATPase D). | 261 | 4e-68 | 182/629 (28%) | 302/629 (48%) | 47/629 (7%) |
| Q877G7 | SAV2 | TrEMBL | Sulfolobus acidocaldarius | AAA family ATPase. | 261 | 3e-68 | 167/474 (35%) | 249/474 (52%) | 6/474 (1%) | |
| O60058 | SPBC56F2.07C | TrEMBL | Schizosaccharomyces pombe (Fission yeast) | AAA family ATPase. | 259 | 1e-67 | 160/468 (34%) | 251/468 (53%) | 1/468 (0%) | |
| P54774 | CDC48 | CC48_SOYBN | SP | Glycine max (Soybean) | Cell division cycle protein 48 homolog (Valosin containing protein homolog) (VCP). | 258 | 3e-67 | 180/633 (28%) | 302/633 (47%) | 47/633 (7%) |
| O44008 | VCP | TrEMBL | Trypanosoma brucei | Valosin-containing protein homolog. | 257 | 8e-67 | 182/628 (28%) | 304/628 (48%) | 48/628 (7%) | |
| Q980U9 | SSO0176 | TrEMBL | Sulfolobus solfataricus | AAA family ATPase. | 256 | 2e-66 | 184/609 (30%) | 293/609 (48%) | 22/609 (3%) |
Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- AAA ATPase family associated with various cell 322.1 6.5e-93 2 NACHT NACHT domain -46.1 1 1 SPX SPX domain -68.3 7.7 1 ABC_tran ABC transporter -69.4 8.3 1 Torsin Torsin -187.8 0.43 1 Yeast_VAR1 Mitochondrial ribosomal protein (VAR1) -230.0 5.8 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- ABC_tran 1/1 518 672 .. 1 199 [] -69.4 8.3 NACHT 1/1 519 676 .. 1 210 [] -46.1 1 SPX 1/1 559 677 .. 1 327 [] -68.3 7.7 Torsin 1/1 480 711 .. 1 296 [] -187.8 0.43 AAA 1/2 520 713 .. 1 216 [] 41.9 1.4e-08 Yeast_VAR1 1/1 526 837 .. 1 413 [] -230.0 5.8 AAA 2/2 798 982 .. 1 216 [] 280.2 2.7e-80
CDS Sequence
ATGGATAATC ATAAAGCTAG AATATCTTAT AAGACATTAA AGTCTAATTT GGTTAATTTA CCATCTAGTT TAACCAATTT ATTATTCACC GCCAACATTC AAGTTCAAGA TGTGATAATA GAAATGGTTA CCACCACTTC AAATGGTAAT AAAAAGAACT CTACCACCAC TAAACACTAT GCTGGTTGGT CTGGAATGTC ATCCTCTGAT ATTTCTAATT TAGAAATAGA TCCAGTATTT GCTCAATCAT TAAATCTTAT TGATAAAACC CCTATCATAG TCAATTTAAA ACTTGGGAAT TATGAATCAA CTAATATCAA TTTAGAACCA TTAACAAGTT CTGATTGGGA ATTAGTAGAA TTACATGCTC AATCAATTGA AGATAAATTA TTGAGTCAAA CTCGATGTGT GGCCTTAAAT CAAGTATTGG TAGTATACCC TAGTGCTACA ACTAGTGCCA AATTATTAGT AACAGATTTA GGTAGTACTG ATCATACGTT TGCCAAAATA TCACCGTATT GTGAAATAGC TATAGCTCCT AAAGTAAGAG AAAAGGAACA GAAAAATAAT AAGACTGCAA GTTCTAGTAA GAGTATTGCT AGTTCAAAAA GTACGAAAAG AACAACATCA TCATCGCTGG AAGATTATTC TGATTTACCC CTGGTTTTGA AAAGAGGAAT ATCATTACCA CATAAGTTAT ATAATGTTAA TGAGGCAGTA GCAGGTTACT TTGTATATGT GGATATTGAC GATGAATTAC CTCAAGGGTT CAATAGTGAA TATGTTGCTG TATCAGTGAT TCCGGGTCCA AATGATAAAA CATCAACAAA AGCATTACAA GCAACCGAAG ATGACAACAA CAACAACAAC AACAGCAACA ATAACAACAA AAATTTGAAA GAAAATAAAA GAATTATTGC TAAATTAGTA GACTACAAAT CTGGTCCTTC AGGAAATATT GGATTATCCC GTAACTTAGC CATAGCATTG AATATTGAAA ATCAAATCGG GAACATTATT AGTTTGAAAC CAGCTATTAA AAATTTACCC AAGAGACCAA CAACGTTCAC TATTCATCCT TATATTATAC ATACAAAGAA AAAAGAAATC ACTATTAGCA GTAATAAAAA GGAGAATAAA TTGGCACAAC AGTTAACAGA AATCATGTAC CCTGGAATTG CATCAATACC CATTACCAAT TTTACGAAGA TCCCCATTAT TGCCAATGTT TTACCGTATG GTGGATTATT GAGATTTAGG AAAAATGATG AATATAATGC TTGGATTAAA CCATATAATT TAGATCTGAA GAAACCTATA AAATTTGAAA TTGGTGATGA AATTTTACGT CCTAGTTCAT TTATAGAACA AGAGATTGAC AAACCGACAA CTAATGATAC AGAAGAACAG GAAGCAATTG GATTAGACAA TACAGTTGAA GATATTGTTG ATTCATTTAT TACATCAGAT AATACTGGGA CTTTAGTATA TGGGAATTCT GGTAGTGGGA AAACTTTATT ATTGAAATTA GTGGCACAAC AATTAAATCA ACAACATGGT TATTTCACAA AATATATATC ATGTGACACC ATAATGAATG AAAATTTCCA AAATTTATCT AAAAACCATT TTTTCAAATG GATTCAAACT TGTGCATGGA ATAAACCATC AGTTTTGATT TTGGATAATA TTGATAAATT AATGAGTGTA GAAATGGAAA ATATGGATGC CACCAAATCT AATCAATTGA CAGAATTTTT CATATCTAAT TTAACGAAAA TTCATCATCA ATTAAATTCC AATTTATCAA TATTATTATC AGCTAATTCT AAAGATAATA TTAATAAATT ATTATTAGGA TCTCATTTAA TTGAAAATTT CCATCATTTA AATCCACCAG ATAAATCATT ACGATTTGAA ATTTTAGATA AATATTTAAC TAATAAATTA GGATTAAAAA TTAAGGTTGA TTTAATGGAT TTAGTTAGTG AAACTGAAGG TTATTTACCA AATGATTTGA AAATTTTAAG TGATAGAATA TATCATGAAG TTTTGTTCAA CAGCACTGAA ACAGAAACAG AAACAGAAAC TGAAGCCACC ACCAATGCCG CAGTGACTAG TGAACATATT GAAAAGGCTT TAGCTGGTTA TACGCCATCT AATTTACGTG GAGTTAAATT ACAAAAATCA TCGATTAATT GGTCAGATAT AGGAGGATTA AAAGAAGCGA AAAACATTTT ATTAGAAACT TTAGAATGGC CCACTAAATA TGCCCCTATA TTTGCTAATT GTCCATTACG TTTAAGATCA GGTATTTTAC TATATGGATA CCCTGGGTGT GGTAAAACAT TATTAGCCAG TGCTATAGCT GGTCAATGTG GATTAAATTT TATTTCCATC AAGGGGCCAG AAATTTTAAA TAAATATATT GGTGCTTCAG AACAAAGTGT TCGAGAACTT TTTGAAAGAG CTCAAGCTGC TAAACCATGT ATTTTATTTT TCGATGAATT TGATTCCATT GCTCCTAAAA GAGGTCATGA TTCTACTGGG GTGACTGATC GTGTTGTTAA TCAAATGTTG ACACAAATGG ATGGGGCTGA AGGATTAGAT GGAGTTTATG TGTTAGCAGC TACTTCAAGA CCAGATTTGA TTGATTCAGC ATTATTAAGA CCTGGTAGAT TAGATAAAAG TGTTATATGT GATATGCCTA ATTATGAAGA TCGATTAGAT ATTTTACAAA GTATTACTAC AAAGATGGAT TTGAGTGATG ATGTGAATTT ACATGAAATT GCTGAAAAAA CTACTGGATT TAGTGGGGCT GATATGCAAG GTTTAGGATA TAATGCTTAT TTAAAAGCCG TTCATGTGAC ATTAGAGGAA TTATCTCAAA GGGAACAAGA TGAAGCAAAT AATGAAGATG GTAATAATAA TTTTGAAAAA AATTCCATAG AATTCTTTCA AGTGGGTAAT TCAGAAAAGA AATTAAAGAC CAATGAAAAA ATCCAATTAT TACATCAAAT TCAACAATTT ATGAATCCTA ATAAAGATAA TTCAGATTCA GAAAGAAAAG CAGGTCAAGA TGCAATGAAT AAATCAAAAG TTTTAATTAC TCATGAGAAT TTTTTGGAAT CATTAAAAGA AACTAAACCA TCAATTTCCC ATTCAGAGAA AATCAAATTA ACGAAAATTT ATAAAGAATT TGTTAATGAT CGAGATGGTA ATATGCCTGA TGGGACCCCA AGTAATGAAA TTGGAGGAAG AACTACATTA ATGTAA
AA Sequence
MDNHKARISY KTLKSNLVNL PSSLTNLLFT ANIQVQDVII EMVTTTSNGN KKNSTTTKHY AGWSGMSSSD ISNLEIDPVF AQSLNLIDKT PIIVNLKLGN YESTNINLEP LTSSDWELVE LHAQSIEDKL LSQTRCVALN QVLVVYPSAT TSAKLLVTDL GSTDHTFAKI SPYCEIAIAP KVREKEQKNN KTASSSKSIA SSKSTKRTTS SSLEDYSDLP LVLKRGISLP HKLYNVNEAV AGYFVYVDID DELPQGFNSE YVAVSVIPGP NDKTSTKALQ ATEDDNNNNN NSNNNNKNLK ENKRIIAKLV DYKSGPSGNI GLSRNLAIAL NIENQIGNII SLKPAIKNLP KRPTTFTIHP YIIHTKKKEI TISSNKKENK LAQQLTEIMY PGIASIPITN FTKIPIIANV LPYGGLLRFR KNDEYNAWIK PYNLDLKKPI KFEIGDEILR PSSFIEQEID KPTTNDTEEQ EAIGLDNTVE DIVDSFITSD NTGTLVYGNS GSGKTLLLKL VAQQLNQQHG YFTKYISCDT IMNENFQNLS KNHFFKWIQT CAWNKPSVLI LDNIDKLMSV EMENMDATKS NQLTEFFISN LTKIHHQLNS NLSILLSANS KDNINKLLLG SHLIENFHHL NPPDKSLRFE ILDKYLTNKL GLKIKVDLMD LVSETEGYLP NDLKILSDRI YHEVLFNSTE TETETETEAT TNAAVTSEHI EKALAGYTPS NLRGVKLQKS SINWSDIGGL KEAKNILLET LEWPTKYAPI FANCPLRLRS GILLYGYPGC GKTLLASAIA GQCGLNFISI KGPEILNKYI GASEQSVREL FERAQAAKPC ILFFDEFDSI APKRGHDSTG VTDRVVNQML TQMDGAEGLD GVYVLAATSR PDLIDSALLR PGRLDKSVIC DMPNYEDRLD ILQSITTKMD LSDDVNLHEI AEKTTGFSGA DMQGLGYNAY LKAVHVTLEE LSQREQDEAN NEDGNNNFEK NSIEFFQVGN SEKKLKTNEK IQLLHQIQQF MNPNKDNSDS ERKAGQDAMN KSKVLITHEN FLESLKETKP SISHSEKIKL TKIYKEFVND RDGNMPDGTP SNEIGGRTTL M*