| Acc# | Gene | Locus | DB | Organism | Product | Score | E-value | Identities | Positives | Gaps |
|---|---|---|---|---|---|---|---|---|---|---|
| Q9P4V6 | TrEMBL | Candida boidinii (Yeast) | RNA-binding protein. | 137 | 1e-31 | 75/149 (50%) | 102/149 (68%) | 5/149 (3%) | ||
| Q7ZXB8 | TrEMBL | Xenopus laevis (African clawed frog) | Similar to poly(A) binding protein, nuclear 1. | 136 | 3e-31 | 72/146 (49%) | 97/146 (66%) | 7/146 (4%) | ||
| O14327 | SPBC16E9.12C | TrEMBL | Schizosaccharomyces pombe (Fission yeast) | Putative poly(a) binding protein. | 135 | 6e-31 | 74/147 (50%) | 96/147 (65%) | ||
| Q9DDY9 | PABPII | TrEMBL | Xenopus laevis (African clawed frog) | Poly(A) binding protein II. | 135 | 4e-31 | 72/146 (49%) | 96/146 (65%) | 7/146 (4%) | |
| Q8CCS6 | TrEMBL | Mus musculus (Mouse) | Poly. | 133 | 2e-30 | 70/137 (51%) | 94/137 (68%) | 7/137 (5%) | ||
| O35935 | PABPN1 | TrEMBL | Mus musculus (Mouse) | Poly(A) binding protein II. | 133 | 2e-30 | 70/137 (51%) | 94/137 (68%) | 7/137 (5%) | |
| O43484 | PABP2 | TrEMBL | Homo sapiens (Human) | Poly(A) binding protein II (Similar to poly(A)-binding protein, nuclear 1). | 133 | 2e-30 | 70/137 (51%) | 94/137 (68%) | 7/137 (5%) | |
| Q28165 | PABII | TrEMBL | Bos taurus (Bovine) | PolyA binding protein II. | 133 | 2e-30 | 70/137 (51%) | 94/137 (68%) | 7/137 (5%) | |
| Q86U42 | TrEMBL | Homo sapiens (Human) | Human full-length cDNA clone CS0DF018YN09 of fetal brain of Homo sapiens (Human) (Fragment). | 133 | 2e-30 | 70/137 (51%) | 94/137 (68%) | 7/137 (5%) | ||
| Q93VI4 | MWD22.6/AT5G51120 | TrEMBL | Arabidopsis thaliana (Mouse-ear cress) | Putative polyA-binding protein II (AT5g51120/MWD22_6) (Hypothetical protein). | 127 | 2e-28 | 68/139 (48%) | 96/139 (69%) | 6/139 (4%) | |
| Q8LG48 | TrEMBL | Arabidopsis thaliana (Mouse-ear cress) | Contains similarity to poly(A)-binding protein II. | 127 | 2e-28 | 68/139 (48%) | 96/139 (69%) | 6/139 (4%) | ||
| Q9LU62 | TrEMBL | Arabidopsis thaliana (Mouse-ear cress) | Similarity to poly(A)-binding protein II. | 127 | 2e-28 | 68/139 (48%) | 96/139 (69%) | 6/139 (4%) | ||
| Q9FJN9 | MQN23.20 | TrEMBL | Arabidopsis thaliana (Mouse-ear cress) | Poly(A)-binding protein II-like. | 127 | 2e-28 | 68/134 (50%) | 92/134 (68%) | 5/134 (3%) | |
| Q804A5 | TrEMBL | Xenopus laevis (African clawed frog) | Putative polyA-binding protein PABPN2/ePABP2. | 126 | 3e-28 | 68/160 (42%) | 102/160 (63%) | 20/160 (12%) | ||
| Q27926 | PABP2 | TrEMBL | Drosophila melanogaster (Fruit fly) | RNA binding protein. | 124 | 1e-27 | 64/136 (47%) | 95/136 (69%) | 6/136 (4%) | |
| Q9LX90 | F12B17_300 | TrEMBL | Arabidopsis thaliana (Mouse-ear cress) | RNA binding protein-like (Putative polyadenylate-binding protein II) (PAB2). | 124 | 1e-27 | 68/134 (50%) | 90/134 (67%) | 6/134 (4%) | |
| Q9V308 | PABP2 | TrEMBL | Drosophila melanogaster (Fruit fly) | PABP2 protein (RE69521p) (RE74211p). | 124 | 8e-28 | 65/136 (47%) | 95/136 (69%) | 6/136 (4%) | |
| Q93233 | C17E4.5 | TrEMBL | Caenorhabditis elegans | C17E4.5 protein. | 119 | 3e-26 | 64/160 (40%) | 99/160 (61%) | 8/160 (5%) | |
| Q8SSX6 | TrEMBL | Dictyostelium discoideum (Slime mold) | RNA binding protein (Hypothetical protein). | 111 | 1e-23 | 64/140 (45%) | 88/140 (62%) | 13/140 (9%) | ||
| Q09301 | EEED8.12 | YQOC_CAEEL | SP | Caenorhabditis elegans | Hypothetical RNA-binding protein EEED8.12 in chromosome II. | 105 | 5e-22 | 55/132 (41%) | 87/132 (65%) | 2/132 (1%) |
| Q8I2R8 | PFI1175C | TrEMBL | Plasmodium falciparum (isolate 3D7) | RNA-binding protein, putative. | 103 | 2e-21 | 57/149 (38%) | 89/149 (59%) | 4/149 (2%) | |
| Q09295 | EEED8.4 | YQO4_CAEEL | SP | Caenorhabditis elegans | Hypothetical RNA-binding protein EEED8.4 in chromosome II. | 102 | 4e-21 | 50/122 (40%) | 83/122 (68%) | 1/122 (0%) |
| O44530 | T08B6.5 | TrEMBL | Caenorhabditis elegans | Hypothetical protein T08B6.5. | 97.8 | 1e-19 | 55/116 (47%) | 75/116 (64%) | ||
| Q8J1F4 | YIB1 | TrEMBL | Ashbya gossypii (Yeast) (Eremothecium gossypii) | Yib1. | 92.8 | 4e-18 | 54/161 (33%) | 92/161 (57%) | 7/161 (4%) | |
| P40561 | YIR001C | YIS1_YEAST | SP | Saccharomyces cerevisiae (Baker's yeast) | Hypothetical 29.0 kDa protein in BET1-PAN1 intergenic region. | 86.7 | 3e-16 | 48/139 (34%) | 80/139 (57%) | 5/139 (3%) |
| Q9C7B4 | T2E22.5 | TrEMBL | Arabidopsis thaliana (Mouse-ear cress) | Hypothetical protein. | 67.8 | 1e-10 | 37/103 (35%) | 59/103 (57%) | 4/103 (3%) | |
| Q8LBD4 | TrEMBL | Arabidopsis thaliana (Mouse-ear cress) | Hypothetical protein. | 67.8 | 1e-10 | 37/103 (35%) | 59/103 (57%) | 4/103 (3%) | ||
| Q9LTX1 | TrEMBL | Arabidopsis thaliana (Mouse-ear cress) | Similarity to poly(A)-binding protein. | 67.8 | 1e-10 | 37/103 (35%) | 59/103 (57%) | 4/103 (3%) | ||
| O45712 | R09B3.2 | TrEMBL | Caenorhabditis elegans | R09B3.2 protein. | 67.4 | 2e-10 | 30/73 (41%) | 49/73 (67%) | ||
| O62337 | R06C1.4 | TrEMBL | Caenorhabditis elegans | R06C1.4 protein. | 66.2 | 4e-10 | 30/73 (41%) | 48/73 (65%) |
Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- rrm RNA recognition motif. (a.k.a. RRM, RB 79.4 7.5e-20 1 Pox_A_type_inc Viral A-type inclusion protein repeat 13.2 6 1 PFEMP Plasmodium falciparum erythrocyte memb -84.5 5.9 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- Pox_A_type_inc 1/1 88 110 .. 1 23 [] 13.2 6 PFEMP 1/1 1 119 [. 1 170 [] -84.5 5.9 rrm 1/1 128 199 .. 1 77 [] 79.4 7.5e-20
CDS Sequence
atgtctgatc aaataccagt tgaaaaccaa caagttcctt ctgagaattc agaggaagta aagaataaat tggaagaaat ggaacaagaa actgccaagt tgagagaact tcattcacaa ttaagttcag agtctaccaa tggcgtaact catcctaccg atgaagaaaa gagggacaca gatgcaagat ccatatacat aggtaacgtt gattatggtt caacaccatt agaattgcaa caacattttt caagtgccgg ggttgttaac agagtaacaa tattgacaaa caaattcact ggtcaaccaa aagggtttgc atatttggaa tttgcagaca ctgatgcagt caataaagct gttgctacgt tggatgggtc gacttttagg gaacgtcaat tgaaggttct ggcaaaaaga acaaatattc ctggtataag tgtgaaaaga ggttttcctg gaagaggcag aggcaacttc cgaggtggta gaggcagagg tggcagaggt ggaagaggtg gtttcagagg cgcaagaggc ggacctagat ttaacccata ttga
AA Sequence
MSDQIPVENQ QVPSENSEEV KNKLEEMEQE TAKLRELHSQ LSSESTNGVT HPTDEEKRDT DARSIYIGNV DYGSTPLELQ QHFSSAGVVN RVTILTNKFT GQPKGFAYLE FADTDAVNKA VATLDGSTFR ERQLKVLAKR TNIPGISVKR GFPGRGRGNF RGGRGRGGRG GRGGFRGARG GPRFNPY*