Chromosome 7

CaJ7.0048(CaO19.7084)

InitTermntaa
CDS 59071600841014339

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Acc#GeneLocusDBOrganismProductScoreE-valueIdentitiesPositivesGaps

No hits above score 50


Pfam

Scores for sequence family classification (score includes all domains):

Model    Description                                    Score    E-value  N 

-------- -----------                                    -----    ------- ---

Mid2     Mid2 like cell wall stress sensor              -47.0      0.044   1

Syndecan Syndecan domain                               -149.2        5.8   1



Parsed for domains:

Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value

-------- ------- ----- -----    ----- -----      -----  -------

Syndecan   1/1      31   319 ..     1   437 []  -149.2      5.8

Mid2       1/1     219   336 ..     1   158 []   -47.0    0.044




CDS Sequence

ATGGAGAAAC TTTCAATCAA CAACAACAAT AATAACAGGA GATACCAGAG CAGGAGATTT 
GATGGTATTA CCATTATACG TATTGTTGTT TTGGTATTCA TAGTCACTGT ATCGACGTAT 
TTTGTCAACA GCTACACATG CAATCAACCA CACCATAATC ACTCGACCAG ACCAAGCCAT 
TATTTACCAA TAAATGGCAC TCATGGGTTG ATGAATAATG ATGATTCATT GCATAATAAA 
GGTGCTATTG GTCATTATAA CACCACAGTG TCCCTTGAAA GAAGAGCTGA CGAAAACAAC 
TCAACAACAA ACGGGTTATT CCCTCTGACT TCATCGTCTA CATTCATATT CACTCCATCT 
TCATCGTCTT CTTCTACATT TCAACAATCA AGGTCATCTC CACAAACAAC ATCTACAAGC 
TCATTTGTTG CTACAACATC ATCGTTCCAA CAAGAAACAT CACAAACTTC AATTCCTGAC 
ACTACTACGG ATTTTTCTTT TAGCTCATTT TCCGAGGCTC CTACTACATC AACAACTAGT 
TCTACATCAG AATTTAGTAG TACACCACAG GAAACTAGCA ACACAGTGAC CAGTACTTCT 
TCCACGTCAA CATCATCATC GTCGTCACCT ACATCAAGTC CTGCAACAAC ATCGGCTTCT 
CAACATGTTA CTACATTCAG TTCTGTTGAT AATGGGAAGA CTATTGTTGT GACGAGAACT 
TCTGTCATCT CGAGTCTGCC AACTGCCTCT AACAGCAACA ACAATAAGAA CAATGATAAC 
GGAGGAGGAT TATCCCATAC AAACAGAATA GTTGTTGGTG TAGTTGTTGG GGTTGGTGGT 
TCTATATTAA TTGGTTTGTT GGCCGTTTTA TTTTACTTGA GAAAGAGAAA CAACCGTGAT 
TATGAAGGTG GATGGACTTT CTGGAGAAAG AATGAGAAAT TGGGAAGTGA TGAGTTCTTC 
AATGGTGAAT TGGGTGTCAG AGACAGAAAT ATTAATCAAG GATCAAATTT TTAA

AA Sequence

MEKLSINNNN NNRRYQSRRF DGITIIRIVV LVFIVTVSTY FVNSYTCNQP HHNHSTRPSH 
YLPINGTHGL MNNDDSLHNK GAIGHYNTTV SLERRADENN STTNGLFPLT SSSTFIFTPS 
SSSSSTFQQS RSSPQTTSTS SFVATTSSFQ QETSQTSIPD TTTDFSFSSF SEAPTTSTTS 
STSEFSSTPQ ETSNTVTSTS STSTSSSSSP TSSPATTSAS QHVTTFSSVD NGKTIVVTRT 
SVISSLPTAS NSNNNKNNDN GGGLSHTNRI VVGVVVGVGG SILIGLLAVL FYLRKRNNRD 
YEGGWTFWRK NEKLGSDEFF NGELGVRDRN INQGSNF*