| Acc# | Gene | Locus | DB | Organism | Product | Score | E-value | Identities | Positives | Gaps |
|---|---|---|---|---|---|---|---|---|---|---|
| P25555 | GBP2 | GBP2_YEAST | SP | Saccharomyces cerevisiae (Baker's yeast) | Single-strand telomeric DNA-binding protein GBP2 (G-strand binding protein 2) (RAP1 localization factor 6). | 244 | 1e-63 | 135/342 (39%) | 203/342 (59%) | 3/342 (0%) |
| P38922 | HRB1 | HRB1_YEAST | SP | Saccharomyces cerevisiae (Baker's yeast) | HRB1 protein (TOM34 protein). | 241 | 2e-62 | 138/351 (39%) | 186/351 (52%) | 5/351 (1%) |
| Q874Y8 | TrEMBL | Podospora anserina | DNA centromeric region sequence from BAC DP26B06, DP34F04, DP16D11, DP09G08, DP35C12 of chromosome 5 of Podospora anserina. | 164 | 2e-39 | 111/378 (29%) | 169/378 (44%) | 45/378 (11%) | ||
| Q8J0M5 | GBP2 | TrEMBL | Saccharomyces bayanus (Yeast) (Saccharomyces uvarum) | GBP2p (Fragment). | 153 | 5e-36 | 81/205 (39%) | 124/205 (60%) | 7/205 (3%) | |
| Q9P3U1 | SPAC328.05 | TrEMBL | Schizosaccharomyces pombe (Fission yeast) | Protein with 3 RNA binding domains, yeast hrb1 homologue. | 150 | 2e-35 | 99/348 (28%) | 160/348 (45%) | 16/348 (4%) | |
| Q8J0M9 | GBP2 | TrEMBL | Saccharomyces paradoxus (Yeast) | GBP2p (Fragment). | 124 | 2e-27 | 62/171 (36%) | 103/171 (60%) | 3/171 (1%) | |
| Q08935 | ROC1_NICSY | SP | Nicotiana sylvestris (Wood tobacco) | 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A). | 103 | 3e-21 | 71/217 (32%) | 110/217 (50%) | 5/217 (2%) | |
| Q39568 | GBP1 | TrEMBL | Chlamydomonas reinhardtii | Gbp1p. | 102 | 1e-20 | 65/200 (32%) | 101/200 (50%) | 4/200 (2%) | |
| P49313 | ROC1_NICPL | SP | Nicotiana plumbaginifolia (Leadwort-leaved tobacco) | 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30). | 101 | 2e-20 | 69/217 (31%) | 108/217 (49%) | 5/217 (2%) | |
| Q876Z0 | TrEMBL | Ashbya gossypii (Yeast) (Eremothecium gossypii) | GBP2 (Fragment). | 100 | 5e-20 | 58/172 (33%) | 86/172 (50%) | 25/172 (14%) | ||
| Q43349 | RBP29 | ROC2_ARATH | SP | Arabidopsis thaliana (Mouse-ear cress) | 29 kDa ribonucleoprotein, chloroplast precursor (RNA-binding protein cp29). | 99.8 | 6e-20 | 69/247 (27%) | 119/247 (48%) | 34/247 (13%) |
| Q8C854 | MYEF2 | TrEMBL | Mus musculus (Mouse) | Myelin basic protein expression factor 2. | 97.8 | 2e-19 | 60/199 (30%) | 103/199 (51%) | 8/199 (4%) | |
| Q8QZZ1 | MYEF2 | TrEMBL | Mus musculus (Mouse) | Myelin gene expression factor. | 97.8 | 2e-19 | 60/199 (30%) | 103/199 (51%) | 8/199 (4%) | |
| Q8W214 | TrEMBL | Solanum tuberosum (Potato) | Single-stranded DNA binding protein precursor. | 97.1 | 4e-19 | 61/205 (29%) | 101/205 (49%) | 3/205 (1%) | ||
| Q08937 | ROC2_NICSY | SP | Nicotiana sylvestris (Wood tobacco) | 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B). | 96.3 | 7e-19 | 62/216 (28%) | 112/216 (51%) | 4/216 (1%) | |
| Q9H922 | TrEMBL | Homo sapiens (Human) | Hypothetical protein FLJ13071. | 95.9 | 9e-19 | 64/202 (31%) | 102/202 (50%) | 11/202 (5%) | ||
| Q9ZUU4 | AT2G37220 | ROC1_ARATH | SP | Arabidopsis thaliana (Mouse-ear cress) | Putative ribonucleoprotein At2g37220, chloroplast precursor. | 95.5 | 1e-18 | 66/216 (30%) | 112/216 (51%) | 5/216 (2%) |
| Q8L941 | TrEMBL | Arabidopsis thaliana (Mouse-ear cress) | Putative RNA-binding protein. | 95.5 | 1e-18 | 66/216 (30%) | 112/216 (51%) | 5/216 (2%) | ||
| Q9P2K5 | KIAA1341 | TrEMBL | Homo sapiens (Human) | Hypothetical protein KIAA1341 (Fragment). | 95.1 | 2e-18 | 62/201 (30%) | 101/201 (50%) | 10/201 (4%) | |
| P49314 | ROC2_NICPL | SP | Nicotiana plumbaginifolia (Leadwort-leaved tobacco) | 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31). | 95.1 | 2e-18 | 62/216 (28%) | 112/216 (51%) | 4/216 (1%) | |
| Q8LHN4 | P0519E12.13 | TrEMBL | Oryza sativa (japonica cultivar-group) | Putative ribonucleoprotein. | 94.4 | 3e-18 | 60/221 (27%) | 107/221 (48%) | 5/221 (2%) | |
| Q86PS0 | GBP | TrEMBL | Cryptosporidium parvum | Putative single stranded G-strand telomeric DNA-binding protein. | 91.3 | 2e-17 | 62/204 (30%) | 92/204 (45%) | ||
| Q9Y655 | TrEMBL | Homo sapiens (Human) | Myelin gene expression factor 2. | 90.9 | 3e-17 | 57/199 (28%) | 99/199 (49%) | 8/199 (4%) | ||
| Q8S7G2 | OSJNBB0048D20.12 | TrEMBL | Oryza sativa (Rice) | Putative ribonucleoprotein. | 90.5 | 4e-17 | 58/203 (28%) | 92/203 (45%) | 3/203 (1%) | |
| Q23796 | TrEMBL | Chironomus tentans (Midge) | hnRNP protein. | 89.7 | 7e-17 | 72/242 (29%) | 105/242 (43%) | 2/242 (0%) | ||
| Q09167 | SFRS5 | SFR5_RAT | SP | Rattus norvegicus (Rat) | Splicing factor, arginine/serine-rich 5 (Pre-mRNA splicing factor SRP40) (Insulin-induced growth response protein CL-4) (Delayed-early protein HRS). | 86.3 | 7e-16 | 72/253 (28%) | 101/253 (39%) | |
| Q41367 | TrEMBL | Spinacia oleracea (Spinach) | 24 kDa RNA binding protein (Fragment). | 86.3 | 7e-16 | 61/203 (30%) | 94/203 (46%) | 3/203 (1%) | ||
| P26686 | E(DFD) | SR55_DROME | SP | Drosophila melanogaster (Fruit fly) | Serine-arginine protein 55 (SRP55) (Enhancer of deformed) (52-kDa bracketing protein) (B52 protein). | 84.0 | 4e-15 | 69/241 (28%) | 104/241 (43%) | 8/241 (3%) |
| Q9VFT0 | B52 | TrEMBL | Drosophila melanogaster (Fruit fly) | B52 protein. | 83.6 | 5e-15 | 69/241 (28%) | 104/241 (43%) | 8/241 (3%) | |
| Q9GQI7 | TrEMBL | Caenorhabditis elegans | SF2. | 83.2 | 6e-15 | 75/239 (31%) | 98/239 (41%) | 3/239 (1%) |
Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- rrm RNA recognition motif. (a.k.a. RRM, RBD, or 219.8 3.9e-62 3 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- rrm 1/3 91 160 .. 1 77 [] 77.0 3.8e-19 rrm 2/3 219 289 .. 1 77 [] 87.3 3.1e-22 rrm 3/3 346 416 .. 1 77 [] 60.6 3.3e-14
CDS Sequence
atggctactg ttgaattcaa ttcaaaggac gatgttagag aagctataaa taaatttgac cgttatgaat atcgtggtcg tgaaatcttt gttaggcagg attaccctcc accagaaaag aaacatgatt acggaccacc aagaggcaga ggaactacat acgacagcag atccgggagt agagatagat acaatgacag atatcaaagc agtagaagaa atgacaatta tgctcctcct gcaccaccaa gcaaaccagg tacagaagtt tttattggta atttgccatt ctcggtaaat tggcaagctt tgaaggattt gatgagagac gctggtgaag ttattagagc tgatgttaga ttggacaact atggtaattc aaggggattt ggtactgttg ttttcaacac cgaagaggaa gctgccaaag cagttgagat gtttcaaggt tatgaaattg aaggtagaaa attagacact agaccaggcc gttccactgg atcatcatca ggatatgaaa gagattctta taggtcgtca gatactactg agaaatctag ttatggcgac agaagcaaat ccgcagttgc aaataagaat tctgagttta ctgatggtgt cactgccgat ggtgaaaagt cagatactat ctatgttgcc aacttaccat ttgctactca ggatgatgat ttgtatgatt tgtttgaaac cgttggtaga acaaccaagg ctgaaatcca atatgctgat gacggtagac caagtggaaa cgctgttgtt caatttgaaa ttgctgattt ggctgaaaat gcaattctgc aattaaataa ttatttgtat ggtggtagaa atcttcagat ttcatatgcc aaaagaccag aagaaaaagt ctaa
AA Sequence
MATVEFNSKD DVREAINKFD RYEYRGREIF VRQDYPPPEK KHDYGPPRGR GTTYDSRSGS RDRYNDRYQS SRRNDNYAPP APPSKPGTEV FIGNLPFSVN WQALKDLMRD AGEVIRADVR LDNYGNSRGF GTVVFNTEEE AAKAVEMFQG YEIEGRKLDT RPGRSTGSSS GYERDSYRSS DTTEKSSYGD RSKSAVANKN SEFTDGVTAD GEKSDTIYVA NLPFATQDDD LYDLFETVGR TTKAEIQYAD DGRPSGNAVV QFEIADLAEN AILQLNNYLY GGRNLQISYA KRPEEKV*