| Acc# | Gene | Locus | DB | Organism | Product | Score | E-value | Identities | Positives | Gaps |
|---|---|---|---|---|---|---|---|---|---|---|
| P06839 | RAD3 | RAD3_YEAST | SP | Saccharomyces cerevisiae (Baker's yeast) | DNA repair helicase RAD3 (EC 3.6.1.-). | 1228 | 0.0 | 593/742 (79%) | 676/742 (91%) | 1/742 (0%) |
| Q9P609 | B2O8.040 | TrEMBL | Neurospora crassa | Probable excision repair protein rhp3. | 1135 | 0.0 | 546/741 (73%) | 642/741 (86%) | ||
| P26659 | RAD15 | RA15_SCHPO | SP | Schizosaccharomyces pombe (Fission yeast) | DNA repair helicase rad15 (EC 3.6.1.-) (RAD3 homolog) (Protein rhp3). | 1098 | 0.0 | 522/745 (70%) | 642/745 (86%) | 4/745 (0%) |
| Q91941 | ERCC2/XPD | TrEMBL | Xiphophorus maculatus (Southern platyfish) | ERCC2/XPD protein. | 847 | 0.0 | 406/744 (54%) | 552/744 (74%) | 3/744 (0%) | |
| Q8C487 | ERCC2 | TrEMBL | Mus musculus (Mouse) | Excision repair cross-complementing rodent repair deficiency. | 827 | 0.0 | 400/745 (53%) | 551/745 (73%) | 4/745 (0%) | |
| O08811 | ERCC2 | XPD_MOUSE | SP | Mus musculus (Mouse) | TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-) (DNA-repair protein complementing XP-D cells) (Xeroderma pigmentosum group D complementing protein) (CXPD) (DNA excision repair protein ERCC-2). | 827 | 0.0 | 401/745 (53%) | 551/745 (73%) | 4/745 (0%) |
| Q60452 | ERCC2 | XPD_CRIGR | SP | Cricetulus griseus (Chinese hamster) | TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-) (DNA-repair protein complementing XP-D cells) (Xeroderma pigmentosum group D complementing protein) (CXPD) (DNA excision repair protein ERCC-2). | 823 | 0.0 | 400/745 (53%) | 549/745 (73%) | 4/745 (0%) |
| P18074 | ERCC2 | XPD_HUMAN | SP | Homo sapiens (Human) | TFIIH basal transcription factor complex helicase subunit (EC 3.6.1.-) (DNA-repair protein complementing XP-D cells) (Xeroderma pigmentosum group D complementing protein) (CXPD) (DNA excision repair protein ERCC-2). | 822 | 0.0 | 401/745 (53%) | 549/745 (73%) | 4/745 (0%) |
| Q9XYZ2 | XPD | TrEMBL | Drosophila melanogaster (Fruit fly) | XPD protein. | 820 | 0.0 | 391/716 (54%) | 538/716 (75%) | 3/716 (0%) | |
| Q8N721 | ERCC2 | TrEMBL | Homo sapiens (Human) | Excision repair cross-complementing rodent repair deficiency, complementation group 2 (Xeroderma pigmentosum D). | 792 | 0.0 | 386/721 (53%) | 532/721 (73%) | 4/721 (0%) | |
| Q8K223 | TrEMBL | Mus musculus (Mouse) | Similar to excision repair cross-complementing rodent repair deficiency, complementation group 2. | 792 | 0.0 | 387/744 (52%) | 535/744 (71%) | 3/744 (0%) | ||
| O00836 | REPD | TrEMBL | Dictyostelium discoideum (Slime mold) | RepD. | 763 | 0.0 | 380/744 (51%) | 535/744 (71%) | 3/744 (0%) | |
| Q9SE44 | TrEMBL | Arabidopsis thaliana (Mouse-ear cress) | Nucleotide excision repair protein XP-D homolog. | 759 | 0.0 | 369/729 (50%) | 511/729 (70%) | 3/729 (0%) | ||
| Q8W4M7 | AT1G03190, | TrEMBL | Arabidopsis thaliana (Mouse-ear cress) | Strong similarity to nucleotide excision repair protein (Putative DNA repair protein) (DNA repair/transcription factor protein). | 758 | 0.0 | 369/729 (50%) | 510/729 (69%) | 3/729 (0%) | |
| Q9ZVS1 | F15K9.20 | TrEMBL | Arabidopsis thaliana (Mouse-ear cress) | F15K9.20 protein. | 737 | 0.0 | 363/734 (49%) | 503/734 (68%) | 16/734 (2%) | |
| Q7ZWH2 | TrEMBL | Brachydanio rerio (Zebrafish) (Danio rerio) | Similar to excision repair cross-complementing rodent repair deficiency, complementation group 2. | 690 | 0.0 | 331/623 (53%) | 456/623 (73%) | 1/623 (0%) | ||
| Q8SRT4 | ECU06_0200 | TrEMBL | Encephalitozoon cuniculi | DNA repair helicase of the RAD3/XPD subfamily. | 683 | 0.0 | 357/748 (47%) | 497/748 (66%) | 23/748 (3%) | |
| Q9N3L2 | Y50D7A.2 | TrEMBL | Caenorhabditis elegans | Hypothetical protein Y50D7A.2. | 619 | e-176 | 302/558 (54%) | 416/558 (74%) | 2/558 (0%) | |
| Q8WSK4 | RAD3 | TrEMBL | Plasmodium falciparum | RAD3-like DNA helicase. | 422 | e-117 | 194/421 (46%) | 303/421 (71%) | 3/421 (0%) | |
| Q8I2H7 | PFI1650W | TrEMBL | Plasmodium falciparum (isolate 3D7) | DNA excision-repair helicase, putative. | 421 | e-116 | 193/421 (45%) | 303/421 (71%) | 3/421 (0%) | |
| Q96HN4 | TrEMBL | Homo sapiens (Human) | Similar to Xerodema pigmentosum D (Excision repair cross-complementing rodent repair deficiency, complementation group 2) (Xeroderma pigmentosum D). | 377 | e-103 | 191/392 (48%) | 271/392 (69%) | 2/392 (0%) | ||
| Q9W484 | CG4078 | TrEMBL | Drosophila melanogaster (Fruit fly) | CG4078 protein. | 234 | 3e-60 | 194/763 (25%) | 337/763 (44%) | 65/763 (8%) | |
| Q93575 | F25H2.13 | TrEMBL | Caenorhabditis elegans | Hypothetical 113.0 kDa helicase F25H2.13 in chromosome I. | 203 | 9e-51 | 198/780 (25%) | 340/780 (43%) | 68/780 (8%) | |
| Q8IM12 | PF14_0081 | TrEMBL | Plasmodium falciparum (isolate 3D7) | DNA repair helicase, putative. | 194 | 4e-48 | 197/832 (23%) | 352/832 (42%) | 137/832 (16%) | |
| Q9CA97 | F19K16.9 | TrEMBL | Arabidopsis thaliana (Mouse-ear cress) | Hypothetical protein. | 194 | 3e-48 | 181/750 (24%) | 330/750 (44%) | 56/750 (7%) | |
| Q9NZ71 | NHL | NHL_HUMAN | SP | Homo sapiens (Human) | Helicase-like protein NHL. | 186 | 1e-45 | 186/780 (23%) | 317/780 (40%) | 85/780 (10%) |
| Q94JB5 | P0710A02.18 | TrEMBL | Oryza sativa (Rice) | P0710A02.18 protein. | 174 | 4e-42 | 177/759 (23%) | 315/759 (41%) | 67/759 (8%) | |
| Q92998 | CHLR1 | TrEMBL | Homo sapiens (Human) | CHL1 potential helicase. | 171 | 3e-41 | 174/704 (24%) | 305/704 (43%) | 50/704 (7%) | |
| Q92770 | CHLR1 | TrEMBL | Homo sapiens (Human) | Helicase. | 171 | 3e-41 | 174/704 (24%) | 305/704 (43%) | 50/704 (7%) | |
| Q86VQ4 | TrEMBL | Homo sapiens (Human) | DDX11 protein. | 171 | 3e-41 | 174/704 (24%) | 305/704 (43%) | 50/704 (7%) |
Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- [no hits above thresholds] Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- [no hits above thresholds]
CDS Sequence
atgaagttct ttattgacga cttacctgta ctattcccat accccagaat atacccagag caatattcgt atatgtgtga tatcaaaaag accctagatg tgggtggcaa ctgtatattg gaaatgccct cagggactgg gaagacggtc tcgttgcttt cgcttacggt ggcgtaccag atgcattatc cggagcatag gaaaatcgtt tactgctcgc gtacgatgtc ggagattgag aaggcgttga ttgaattgca caagttgatg gagtttaggg ccaacgagtt gggagaggtg gaagattttc gtgggttggg gttgacaagt agaaagaacc tttgtcttca cccgacgatt tcaaaagaac gaaaaggggt ggtggtggat gaaaagtgca ggagaatcac caatggacaa ctaaaggaaa agattgaaaa gggcgtgcct acagaggata gtttgtgttc gttccatgaa aagttgtacg atttagagcc tcataattta gtgccgccgg gagtctactc attcgatgca ttgatcaagt attgcaagga agaaggaacg tgtccatact ttacagtaag acgaatgatc ccgttttgca atataatcat ctattcgtac cattatttgc ttgatcccaa gattgctgaa cgtgtttcgc gtgagttgtc aaaagatagt attgttatat ttgatgaggc gcataatatc gacaatgtct gcattgagtc gttgtcgttg gacttgactg atgagacttt gaagaaggcg tcacgtggtg ccaataagtt gggtgaggcc attgaggata tgaaggcgca ggatagtgaa aaattgcaga atgagtatga gcagttggtg gaagggttgc gacaggccga gattgcacga gaccaggaat tgtttatggc gaacccggtg ttgccgcagg acttgttaga tgaggctata cctgggaata ttcgaaaggg tgaacacttt attgcgtttt tgaaacggtt cattgagtat ttaaagacga ggatgaaggt gttgcatgtt attagcgaga ccccaacaag ttttttacag cacttgaaag agttgacgta tattgagagg aaaccgttac ggttttgttc cgagaggtta tcgttgttgg tgagaacgtt ggaggtgacg gagattgacg actttaatgc gttgaaagat attgctacgt ttgccacgtt ggtgtcgacg tacgacagtg ggttccagtt gatactagag ccgtatgaga ctgaggggag tactgtgccg aatcccattt tgcattttac gtgtttagat gcgtcgattg cgatcaagcc ggtgtttgac aggttttcat cggtcattat tacgtctggt actatatcgc cattggacat gtatccgaag atgttaaaat ttgaaactgt tatccaggaa tcgtatgcca tgacgttggc gcgtcgctcg tttttgccaa tgattgttac caaagggtct gaccaagtgt cgatatcgtc gaggtttgag attcggaatg acccgtcggt ggtgagaaac tatgggtcgt tgttgattga gtttgccaag atcactccag acggtatggt agtgtttttc ccgtcgtatc tttacatgga gtcgattatt tcgatgtggc agagtatggg ggttttggac gaggtgtgga aacacaagtt gattttggtg gagacgccgg atgcgcagga gacgtcgttg gcgttggaga catacagaaa ggcgtgttcc aacggaagag gggcagtgtt gttgtcggtt gcgcgtggta aagtttctga agggattgat tttgaccacc actatgggag gacggtattg atgattggta taccattcca gtacaccgag tcgaggatct tgaaggcgag actagagttt atgcgagacc atttccaaat caaggagaat gactttttat cattcgatgc gatgagacat gcagcgcagt gtttggggag agttttgaga gggaaagacg attatgggat tatggttttg gccgatcgaa ggtttgcacg gaagaagaac cagttgccga aatggattgc gcaggcgttg aatgattcag atacgaactt gtctacagat atggcgcttg caactgcgaa aaagtttttg cgtagtttgg cgcagccaac taacccgaaa gacctggaag gggtatcgat atggaatatc gagcagttgc aggagtacca acagcagttt caaaaagacg aaatggatat tgatgaggag gatttagatt tgttgtga
AA Sequence
MKFFIDDLPV LFPYPRIYPE QYSYMCDIKK TLDVGGNCIL EMPSGTGKTV SLLSLTVAYQ MHYPEHRKIV YCSRTMSEIE KALIELHKLM EFRANELGEV EDFRGLGLTS RKNLCLHPTI SKERKGVVVD EKCRRITNGQ LKEKIEKGVP TEDSLCSFHE KLYDLEPHNL VPPGVYSFDA LIKYCKEEGT CPYFTVRRMI PFCNIIIYSY HYLLDPKIAE RVSRELSKDS IVIFDEAHNI DNVCIESLSL DLTDETLKKA SRGANKLGEA IEDMKAQDSE KLQNEYEQLV EGLRQAEIAR DQELFMANPV LPQDLLDEAI PGNIRKGEHF IAFLKRFIEY LKTRMKVLHV ISETPTSFLQ HLKELTYIER KPLRFCSERL SLLVRTLEVT EIDDFNALKD IATFATLVST YDSGFQLILE PYETEGSTVP NPILHFTCLD ASIAIKPVFD RFSSVIITSG TISPLDMYPK MLKFETVIQE SYAMTLARRS FLPMIVTKGS DQVSISSRFE IRNDPSVVRN YGSLLIEFAK ITPDGMVVFF PSYLYMESII SMWQSMGVLD EVWKHKLILV ETPDAQETSL ALETYRKACS NGRGAVLLSV ARGKVSEGID FDHHYGRTVL MIGIPFQYTE SRILKARLEF MRDHFQIKEN DFLSFDAMRH AAQCLGRVLR GKDDYGIMVL ADRRFARKKN QLPKWIAQAL NDSDTNLSTD MALATAKKFL RSLAQPTNPK DLEGVSIWNI EQLQEYQQQF QKDEMDIDEE DLDLL*