Chromosome 7

CaJ7.0083(CaO19.7050)

	Init	Term	nt	aa
CDS	127379	128182	804	269

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SPTrEMBL

Acc#	Gene	Locus	DB	Organism	Product	Score	E-value	Identities	Positives	Gaps
O74978	SPCC1827.05C		TrEMBL	Schizosaccharomyces pombe (Fission yeast)	Putative RNA-binding protein.	131	8e-30	61/120 (50%)	91/120 (75%)	2/120 (1%)
Q8SAB6			TrEMBL	Elaeis oleifera (Oil palm)	RNA binding protein.	124	9e-28	58/141 (41%)	89/141 (63%)	2/141 (1%)
Q8T772			TrEMBL	Branchiostoma floridae (Florida lancelet) (Amphioxus)	Hypothetical protein.	113	2e-24	57/111 (51%)	73/111 (65%)	2/111 (1%)
Q8JIY8			TrEMBL	Brachydanio rerio (Zebrafish) (Danio rerio)	Nopp34 nucleolar phosphoprotein-like protein.	109	4e-23	57/142 (40%)	83/142 (58%)	2/142 (1%)
Q9LZ65	T32M21_200		TrEMBL	Arabidopsis thaliana (Mouse-ear cress)	Putative RNA binding protein (AT5g04600/T32M21_200).	108	7e-23	55/141 (39%)	86/141 (60%)	2/141 (1%)
P53927	YNL110C	YNL0_YEAST	SP	Saccharomyces cerevisiae (Baker's yeast)	Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic region.	106	3e-22	61/130 (46%)	81/130 (62%)	16/130 (12%)
Q8TB66			TrEMBL	Homo sapiens (Human)	Nucleolar protein interacting with the FHA domain of pKi-67.	98.2	9e-20	46/114 (40%)	75/114 (65%)	2/114 (1%)
Q9BYG3	NOPP34		TrEMBL	Homo sapiens (Human)	Nucleolar phosphoprotein Nopp34 (Nucleolar protein interacting with the FHA domain of pKi-67).	97.4	2e-19	46/114 (40%)	74/114 (64%)	2/114 (1%)
Q91VE6	MKI67IP		TrEMBL	Mus musculus (Mouse)	Nucleolar protein mNIFK (RNA binding protein).	92.8	4e-18	43/94 (45%)	63/94 (67%)	2/94 (2%)
Q8BVL4	MKI67IP		TrEMBL	Mus musculus (Mouse)	Nucleolar protein MNIFK.	92.8	4e-18	43/94 (45%)	63/94 (67%)	2/94 (2%)
Q9VCY1	CG6937		TrEMBL	Drosophila melanogaster (Fruit fly)	CG6937 protein.	89.0	6e-17	47/111 (42%)	68/111 (61%)
Q8SYV4	CG6937		TrEMBL	Drosophila melanogaster (Fruit fly)	RE32504p.	89.0	6e-17	47/111 (42%)	68/111 (61%)
Q22135	T04A8.6		TrEMBL	Caenorhabditis elegans	T04A8.6 protein.	80.9	2e-14	36/77 (46%)	56/77 (72%)
Q96ED4			TrEMBL	Homo sapiens (Human)	Similar to nucleolar protein interacting with the FHA domain of pKi-67 (Fragment).	76.6	3e-13	37/92 (40%)	58/92 (63%)	2/92 (2%)
O45577	F56A8.6		TrEMBL	Caenorhabditis elegans	F56A8.6 protein.	61.6	1e-08	24/73 (32%)	47/73 (64%)
Q86H55			TrEMBL	Dictyostelium discoideum (Slime mold)	Hypothetical protein.	61.6	1e-08	31/85 (36%)	49/85 (57%)	2/85 (2%)
Q941H8			TrEMBL	Solanum tuberosum (Potato)	RNA-binding protein precursor.	59.3	5e-08	31/86 (36%)	46/86 (53%)
Q9LXJ8	F3C22_60		TrEMBL	Arabidopsis thaliana (Mouse-ear cress)	Putative RNA binding protein.	58.5	8e-08	27/79 (34%)	44/79 (55%)
Q8BMV9	MKI67IP		TrEMBL	Mus musculus (Mouse)	Nucleolar protein MNIFK (Fragment).	58.2	1e-07	27/54 (50%)	36/54 (66%)
Q8IDB7	PF13_0315		TrEMBL	Plasmodium falciparum (isolate 3D7)	RNA binding protein, putative.	57.4	2e-07	24/88 (27%)	51/88 (57%)
O48955	QRRBP-1		TrEMBL	Nicotiana tabacum (Common tobacco)	Putative RNA binding protein (Fragment).	57.4	2e-07	27/65 (41%)	43/65 (66%)
P93843			TrEMBL	Nicotiana tabacum (Common tobacco)	DNA binding protein ACBF.	57.4	2e-07	27/65 (41%)	43/65 (66%)
Q9LEB3	RBP47		TrEMBL	Nicotiana plumbaginifolia (Leadwort-leaved tobacco)	RNA binding protein 47.	57.4	2e-07	27/65 (41%)	43/65 (66%)
Q941H9			TrEMBL	Nicotiana tabacum (Common tobacco)	RNA-binding protein precursor.	56.2	4e-07	28/71 (39%)	42/71 (59%)
Q96E39			TrEMBL	Homo sapiens (Human)	Similar to RNA binding motif protein, X chromosome.	56.2	4e-07	29/88 (32%)	48/88 (54%)
Q9LU44	AT5G51300		TrEMBL	Arabidopsis thaliana (Mouse-ear cress)	Similarity to transcription or splicing factor (Hypothetical protein).	56.2	4e-07	23/74 (31%)	43/74 (58%)
Q94KA0			TrEMBL	Arabidopsis thaliana (Mouse-ear cress)	Hypothetical protein.	56.2	4e-07	23/74 (31%)	43/74 (58%)
Q9SD61	F13I12.170		TrEMBL	Arabidopsis thaliana (Mouse-ear cress)	Putative RNA binding protein.	56.2	4e-07	23/73 (31%)	43/73 (58%)
P25299	RNA15	RN15_YEAST	SP	Saccharomyces cerevisiae (Baker's yeast)	mRNA 3'-end processing protein RNA15.	55.5	7e-07	27/78 (34%)	41/78 (52%)
Q8R0F5	2810411A03RIK		TrEMBL	Mus musculus (Mouse)	Similar to CGI-79 protein (Similar to RNA-binding protein).	54.7	1e-06	24/77 (31%)	44/77 (57%)

Pfam

Scores for sequence family classification (score includes all domains):

Model    Description                                    Score    E-value  N 

-------- -----------                                    -----    ------- ---

rrm      RNA recognition motif. (a.k.a. RRM, RBD, or     86.6    4.9e-22   1



Parsed for domains:

Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value

-------- ------- ----- -----    ----- -----      -----  -------

rrm        1/1     126   197 ..     1    77 []    86.6  4.9e-22

CDS Sequence

ATGGCAAGGA AACAAGTTAA ATCGAAGGTT GCTGAAAAGG TTGAAAAGAA ACAAAACATA 
ACAACTCCAA GTGAAAAGTC AGTAGAAGAT ATTGAACATG ATTTACAATT ACCATCCTCA 
TCTGATGAGG AAGAAGATAT AGAACAAGAA GAATTATCTG AAGAAGAAAG CAGTGGTGAT 
GAAGAAGAAG AAGAAGTAGA AAAAGAAGAT AATATAAATG GATTATCTGA CGAAGAACAA 
GAAGAAGTAC AACAACAACA ACAAAACAAA GCTAATAAAT CTGGTCATTC CGTCAACAAA 
ATCATTAAAA CTTCTGAAGC TACTACCACC AATACATCAG CAAACAATAA ATCTACAAAA 
TCCAAATCTG GTGTCATATA TATTGGTAGA TTACCATCAG GATTTCAAGA ATCAGAATTG 
AAAACTTATT TTTCTCAATT TGGTGATGTG ATTAATGTTA AATTAGCTCG TAATAAAAAA 
ACTGGTAATA CTAAACATTA TGGATTTATA GAATTTGATT CAATTGAAGT AGCTAAAGTT 
GCTGCTGAAA CCATGAATAA TTATTTATTA TTTGGTCATT TAATTAAATG TGAAGTTGTT 
GAAAATCCTC ATGAAGATAC TTTTAAACAT GGTAATAGAA AATTCAAAGT TATTCCTTGG 
AAGAAAATTG CTAAAGAAAA ACATGAAAAA TCGAGAACAG AAGAAGAATG GAAAGTATTG 
ATTGCAAAAT TTGAAGAATC TAAACAGAAA AAGCAAGAAG AATTGAAAAG TAAAGGTATT 
GATTTCGATG TTAGCGCAAT ATAG

AA Sequence

MARKQVKSKV AEKVEKKQNI TTPSEKSVED IEHDLQLPSS SDEEEDIEQE ELSEEESSGD 
EEEEEVEKED NINGLSDEEQ EEVQQQQQNK ANKSGHSVNK IIKTSEATTT NTSANNKSTK 
SKSGVIYIGR LPSGFQESEL KTYFSQFGDV INVKLARNKK TGNTKHYGFI EFDSIEVAKV 
AAETMNNYLL FGHLIKCEVV ENPHEDTFKH GNRKFKVIPW KKIAKEKHEK SRTEEEWKVL 
IAKFEESKQK KQEELKSKGI DFDVSAI*