| Acc# | Gene | Locus | DB | Organism | Product | Score | E-value | Identities | Positives | Gaps |
|---|---|---|---|---|---|---|---|---|---|---|
| P40348 | RFC2 | RFC2_YEAST | SP | Saccharomyces cerevisiae (Baker's yeast) | Activator 1 41 kDa subunit (Replication factor C subunit 2) (Replication factor C2). | 407 | e-112 | 206/358 (57%) | 273/358 (76%) | |
| Q09843 | RCF2 | RFC2_SCHPO | SP | Schizosaccharomyces pombe (Fission yeast) | Probable activator 1 subunit 2 (Replication factor C subunit 2) (Replication factor C2). | 358 | 6e-98 | 190/351 (54%) | 253/351 (72%) | |
| Q99J62 | AU040575 | TrEMBL | Mus musculus (Mouse) | Similar to replication factor C (Activator 1) 4 (37kD). | 304 | 1e-81 | 162/347 (46%) | 242/347 (69%) | ||
| P35249 | RFC4 | RFC4_HUMAN | SP | Homo sapiens (Human) | Activator 1 37 kDa subunit (Replication factor C 37 kDa subunit) (A1 37 kDa subunit) (RF-C 37 kDa subunit) (RFC37). | 302 | 4e-81 | 165/349 (47%) | 241/349 (69%) | 2/349 (0%) |
| Q9FXM3 | OSRFC37 | TrEMBL | Oryza sativa (Rice) | Replication factor C 37kDa subunit. | 300 | 2e-80 | 162/339 (47%) | 224/339 (66%) | ||
| Q93ZX1 | F8K7.11 | TrEMBL | Arabidopsis thaliana (Mouse-ear cress) | Putative replication factor C subunit (Similar replication factor C, 37-kDa subunit). | 298 | 8e-80 | 159/332 (47%) | 222/332 (66%) | 1/332 (0%) | |
| Q86EA0 | TrEMBL | Schistosoma japonicum (Blood fluke) | Clone ZZD636 mRNA sequence. | 290 | 2e-77 | 161/341 (47%) | 224/341 (65%) | 8/341 (2%) | ||
| Q9XI09 | F8K7.11 | TrEMBL | Arabidopsis thaliana (Mouse-ear cress) | F8K7.11 protein. | 280 | 2e-74 | 152/332 (45%) | 212/332 (63%) | 1/332 (0%) | |
| Q9VX15 | CG8142 | TrEMBL | Drosophila melanogaster (Fruit fly) | CG8142 protein (LD35209p). | 265 | 5e-70 | 145/331 (43%) | 218/331 (65%) | ||
| Q8QNA5 | TrEMBL | Ectocarpus siliculosus virus | EsV-1-182. | 259 | 4e-68 | 141/334 (42%) | 211/334 (63%) | 3/334 (0%) | ||
| Q9GR07 | RFC2 | TrEMBL | Plasmodium falciparum | Replication factor C subunit 2. | 245 | 8e-64 | 131/343 (38%) | 211/343 (61%) | ||
| O96260 | PFB0840W | TrEMBL | Plasmodium falciparum | Replication factor C, 40 kDa subunit (Replication activator). | 242 | 6e-63 | 130/343 (37%) | 210/343 (61%) | ||
| Q9YBS7 | APE1522 | TrEMBL | Aeropyrum pernix | 346AA long hypothetical replication factor C subunit. | 227 | 2e-58 | 131/332 (39%) | 202/332 (60%) | 5/332 (1%) | |
| O28219 | AF2060 | TrEMBL | Archaeoglobus fulgidus | Activator 1, replication factor C, 35 kDa subunit. | 223 | 2e-57 | 139/335 (41%) | 201/335 (60%) | ||
| Q975D3 | ST0475 | TrEMBL | Sulfolobus tokodaii | Putative replication factor C small subunit. | 217 | 2e-55 | 125/345 (36%) | 204/345 (59%) | 1/345 (0%) | |
| Q8ZYK4 | PAE0734 | TrEMBL | Pyrobaculum aerophilum | Replication factor C small subunit. | 217 | 2e-55 | 130/339 (38%) | 196/339 (57%) | 2/339 (0%) | |
| Q8PVY4 | MM1821 | TrEMBL | Methanosarcina mazei (Methanosarcina frisia) | Replication factor C subunit. | 213 | 2e-54 | 130/343 (37%) | 203/343 (59%) | 7/343 (2%) | |
| Q9UXF5 | RFC | TrEMBL | Sulfolobus solfataricus | Activator 1, replication factor C, small subunit (RFC). | 211 | 9e-54 | 124/342 (36%) | 197/342 (57%) | 1/342 (0%) | |
| P53016 | F31E3.3 | RFC4_CAEEL | SP | Caenorhabditis elegans | Putative activator 1 37 kDa subunit (Replication factor C 37 kDa subunit) (A1 37 kDa subunit) (RF-C 37 kDa subunit) (RFC37). | 210 | 3e-53 | 122/339 (35%) | 201/339 (59%) | 1/339 (0%) |
| Q8TSX5 | RFCS | TrEMBL | Methanosarcina acetivorans | Replication factor C, small subunit. | 209 | 5e-53 | 126/343 (36%) | 197/343 (57%) | 7/343 (2%) | |
| Q9VKW3 | RFC3 | TrEMBL | Drosophila melanogaster (Fruit fly) | CG5313 protein (Replication factor C subunit 3) (SD11293p). | 207 | 1e-52 | 121/298 (40%) | 170/298 (57%) | 27/298 (9%) | |
| Q8ZWS2 | PAE1646 | TrEMBL | Pyrobaculum aerophilum | Replication factor C small subunit. | 200 | 2e-50 | 120/338 (35%) | 188/338 (55%) | ||
| P34429 | F44B9.8 | RFC5_CAEEL | SP | Caenorhabditis elegans | Putative activator 1 36 kDa subunit (Replication factor C 36 kDa subunit) (A1 36 kDa subunit) (RF-C 36 kDa subunit) (Replication factor C subunit 5). | 199 | 5e-50 | 125/356 (35%) | 190/356 (53%) | 24/356 (6%) |
| Q9GR09 | RFC3 | TrEMBL | Plasmodium falciparum | Replication factor C3. | 198 | 1e-49 | 127/334 (38%) | 184/334 (55%) | 5/334 (1%) | |
| Q8IKK4 | PF14_0601 | TrEMBL | Plasmodium falciparum (isolate 3D7) | Replication factor C3. | 198 | 1e-49 | 127/334 (38%) | 184/334 (55%) | 5/334 (1%) | |
| P40937 | RFC5 | RFC5_HUMAN | SP | Homo sapiens (Human) | Activator 1 36 kDa subunit (Replication factor C 36 kDa subunit) (A1 36 kDa subunit) (RF-C 36 kDa subunit) (RFC36) (Replication factor C subunit 5). | 197 | 2e-49 | 126/354 (35%) | 200/354 (56%) | 3/354 (0%) |
| O26343 | MTH241 | TrEMBL | Methanobacterium thermoautotrophicum | Replication factor C, small subunit. | 197 | 2e-49 | 123/332 (37%) | 182/332 (54%) | 4/332 (1%) | |
| O14003 | RFC3 | RFC3_SCHPO | SP | Schizosaccharomyces pombe (Fission yeast) | Activator 1 subunit 3 (Replication factor C subunit 3) (Replication factor C3). | 196 | 5e-49 | 119/299 (39%) | 172/299 (57%) | 26/299 (8%) |
| Q872Q7 | B13B3.180 | TrEMBL | Neurospora crassa | Related to replication factor C chain Rfc3. | 196 | 5e-49 | 117/361 (32%) | 198/361 (54%) | 12/361 (3%) | |
| O74111 | RFC3 | RFC3_ARXAD | SP | Arxula adeninivorans (Yeast) | Activator 1 subunit 3 (Replication factor C subunit 3) (Replication factor C3). | 195 | 7e-49 | 115/316 (36%) | 179/316 (56%) | 29/316 (9%) |
Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- AAA ATPase family associated with various cellul 39.4 8.2e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- AAA 1/1 59 248 .. 1 216 [] 39.4 8.2e-08
CDS Sequence
ATGGACAGCA CTGGTACTAC TATTAGGAAA CAAAAAAATC AAGCTTATGA AGAAGAAAAA CTTCATCATA CCCCTTGGGT TGAAAAATAT CGTCCTAAAT CCCTTAATGA TGTATCATCA CAAGAACATA CCATTAAAGT ATTAACTCAA ACCATTAAAT CAGGTAATTT ACCTCATATG TTATTTTATG GACCACCAGG AACCGGGAAA ACTTCGACCA TATTAGCATT AGCTAAAGAA TTATATGGAC CCAATTTATA TAAATCTCGA GTATTAGAAT TAAATGCTAG TGATGAAAGA GGTATATCTA TTGTTCGTGA AAAAATTAAA AATTTTGCTC GATTAACAAT AAGTAACCCC ACCAAAGAAG ATTTACAAAA TTATCCTTGT CCTCCTTATA AAATCATTAT ATTAGATGAA GCTGATTCAA TGACTAATGA TGCACAATCG GCATTAAGAA GAACCATGGA AAATTATGCT GGAATTACCA GATTTGTATT GATTTGTAAT TATATTACCA GAATTATTGA TCCAATAACT TCTCGTTGTT CAAAATTTAG ATTTAAATTA TTAAATAATG AAAATGCTCA ATTAAGATTA AAATATATTG GTCAACAAGA AAATTTACGA TTTGAATCAG AAAACAATGA ACATCAAGTG ATTCAAGAAT TATTGAAAAT TAGTGGTGGT GATTTACGTA AAGCTATTAC TTATTTACAA TCAGCGGCTA AATTAAGTGA AACTTTTGAT ATTAATCATC ATCAAAGTTT GATTACTATT CAATCAATTA GAGAAACAGC AGGAATATTA CCCGATGATA TTTTGGCCGA ATTAATTCAA TTCATAAAAC TGAAAACTCA ACAGTCTAGG TTGATTAAAT ATATTGATCA ATCTATTATA TTATCTGGTT GGAGTGCACA AATATTACTC GATCAATTAC ATGATAAATT AATTTTAGAT GAATCAATCA ATTCATTACT GAAAAATAAA ATTTCACAAA TTTTTTTCCA ACTGGATCGT AAATTAAATA ATGGTACTGA TGAACATATT CAATTATTAA ATGTTTTATT ACAAATATCA CAAGTTTTAT AA
AA Sequence
MDSTGTTIRK QKNQAYEEEK LHHTPWVEKY RPKSLNDVSS QEHTIKVLTQ TIKSGNLPHM LFYGPPGTGK TSTILALAKE LYGPNLYKSR VLELNASDER GISIVREKIK NFARLTISNP TKEDLQNYPC PPYKIIILDE ADSMTNDAQS ALRRTMENYA GITRFVLICN YITRIIDPIT SRCSKFRFKL LNNENAQLRL KYIGQQENLR FESENNEHQV IQELLKISGG DLRKAITYLQ SAAKLSETFD INHHQSLITI QSIRETAGIL PDDILAELIQ FIKLKTQQSR LIKYIDQSII LSGWSAQILL DQLHDKLILD ESINSLLKNK ISQIFFQLDR KLNNGTDEHI QLLNVLLQIS QVL*