BLASTX 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Candida_albicans_chr7-f1-200875-201711-5
         (834 letters)

Database: sptrembl 
           1,070,300 sequences; 339,323,595 total letters

Searching.................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

P51998|YML025C|RL4P_YEAST (SP: Saccharomyces cerevisiae (Baker's...   163   3e-39
O74801|SPBC2D10.08C|O74801 (TrEMBL: Schizosaccharomyces pombe (F...    91   2e-17
O17005|T23B12.2|O17005 (TrEMBL: Caenorhabditis elegans) Hypothet...    58   1e-07
Q8EUB4|MYPE10170|Q8EUB4 (TrEMBL: Mycoplasma penetrans) Ribosomal...    57   2e-07
Q9EVT8|RPL4|Q9EVT8 (TrEMBL: Thermus thermophilus) Ribosomal prot...    56   6e-07
P49665|RPLD|RL4_THETH (SP: Thermus thermophilus) 50S ribosomal p...    56   6e-07
Q9ZI49|RPLD|RL4_AQUPY (SP: Aquifex pyrophilus) 50S ribosomal pro...    54   2e-06
O66432|RPLD|RL4_AQUAE (SP: Aquifex aeolicus) 50S ribosomal prote...    53   5e-06
Q9A8V2|CC1249|Q9A8V2 (TrEMBL: Caulobacter crescentus) Ribosomal ...    52   1e-05
Q89J85|RPLD|Q89J85 (TrEMBL: Bradyrhizobium japonicum) 50S riboso...    51   2e-05
P38516|RPLD|RL4_THEMA (SP: Thermotoga maritima) 50S ribosomal pr...    51   2e-05
Q9BW07||Q9BW07 (TrEMBL: Homo sapiens (Human)) Similar to CGI-28 ...    50   3e-05
Q9BYD3|MRPL4|Q9BYD3 (TrEMBL: Homo sapiens (Human)) Mitochondrial...    50   3e-05
Q811L8||Q811L8 (TrEMBL: Mus musculus (Mouse)) Similar to mitocho...    49   9e-05
Q8JZU9|MRPL4|Q8JZU9 (TrEMBL: Mus musculus (Mouse)) Similar to mi...    49   9e-05
Q9DCU6|MRPL4|Q9DCU6 (TrEMBL: Mus musculus (Mouse)) 1110017G11Rik...    49   9e-05
Q8IB54|PF08_0038|Q8IB54 (TrEMBL: Plasmodium falciparum (isolate ...    48   2e-04
Q8YHN9|BMEI0758|Q8YHN9 (TrEMBL: Brucella melitensis) LSU ribosom...    47   2e-04
Q8G077|RPLD|Q8G077 (TrEMBL: Brucella suis) Ribosomal protein L4.       47   2e-04
Q9H4N2||Q9H4N2 (TrEMBL: Homo sapiens (Human)) Clone CDABP0091 mR...    47   3e-04
P57590|RPLD|RL4_BUCAI (SP: symbiotic bacterium)) 50S ribosomal p...    46   5e-04
Q8NT08|CGL0507|Q8NT08 (TrEMBL: Corynebacterium glutamicum (Brevi...    46   5e-04
Q9FA03||Q9FA03 (TrEMBL: Brachyspira pilosicoli) L4 ribosomal pro...    46   5e-04
Q8VY61|AT2G20060|Q8VY61 (TrEMBL: Arabidopsis thaliana (Mouse-ear...    46   6e-04
Q8LE97||Q8LE97 (TrEMBL: Arabidopsis thaliana (Mouse-ear cress)) ...    46   6e-04
P95050|RPLD|RL4_MYCTU (SP: Mycobacterium bovis) 50S ribosomal pr...    46   6e-04
Q92QG9|RPLD|Q92QG9 (TrEMBL: Rhizobium meliloti (Sinorhizobium me...    45   8e-04
Q98N56|MLR0292|Q98N56 (TrEMBL: Rhizobium loti (Mesorhizobium lot...    45   8e-04
Q8UE19|RPLD|Q8UE19 (TrEMBL: Agrobacterium tumefaciens (strain C5...    45   0.001
Q82DP4|RPLD|Q82DP4 (TrEMBL: Streptomyces avermitilis) Putative r...    45   0.001

>P51998|YML025C|RL4P_YEAST (SP: Saccharomyces cerevisiae (Baker's
           yeast)) Putative L4P like ribosomal protein.
          Length = 286

 Score =  163 bits (412), Expect = 3e-39
 Identities = 103/265 (38%), Positives = 137/265 (51%), Gaps = 25/265 (9%)
 Frame = +1

Query: 109 NFAKPPSYTLAQLREFPSLEPKTFIPLPTTFFNTEKPIRRDILWSCVTYEADKARVGSNY 288
           N A PP Y L  +R FPSLEP TF+P+PT+      P+RRDILW  V YE D  RVG++ 
Sbjct: 34  NAAIPPKYALVTVRSFPSLEPLTFVPVPTS--TVAAPLRRDILWRAVVYENDNRRVGASN 91

Query: 289 AILKSDSPYSNRKLRPQKGSGRARLGDANSPHMDNEIKAHAIKGPHDWSTDLPSKIYSRG 468
              +S++ +S RKL PQKGSGRAR+GDANSP   N  +A A   P+D++T+LPSK+YS  
Sbjct: 92  PPGRSENGFSRRKLMPQKGSGRARVGDANSPTRHNGGRALARTAPNDYTTELPSKVYSMA 151

Query: 469 IQNAFTMHYKQGNLNVVENE----------LDFQ---------------YGYDIITQLFV 573
             NA +  YK G L V+  E          LD                 +  ++I + F+
Sbjct: 152 FNNALSHQYKSGKLFVIGGEKVDLISPTPELDLNRLDLVNTNTVEGKEIFEGEVIFRKFL 211

Query: 574 SVHNLNKLNLLFITNEPRDNLMESIKKFYINEKEFNSXXXXXXXXXXXXXXXXVLTKEDV 753
               L    LLFIT++ R+ L++S   +                         V+ KE V
Sbjct: 212 EEFQLKGKRLLFITDKTREGLIKSSDPY--------------------KQKVDVIQKELV 251

Query: 754 EVRDILRAHRVFIESSALQWFITKH 828
           EV DILRA  VFIE  AL++    H
Sbjct: 252 EVNDILRAQAVFIELEALEYLAMAH 276


>O74801|SPBC2D10.08C|O74801 (TrEMBL: Schizosaccharomyces pombe
           (Fission yeast)) L4p-like ribosomal protein,
           mitochodrial.
          Length = 261

 Score = 90.5 bits (223), Expect = 2e-17
 Identities = 68/230 (29%), Positives = 112/230 (48%), Gaps = 5/230 (2%)
 Frame = +1

Query: 151 EFPSLEPKTFIPLPTTFFNTEKPIRRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKL 330
           +FPSLEP +   +P +F   ++  RRDIL   V YEAD  R G+  +  +++   S RKL
Sbjct: 12  KFPSLEPASLFLIPGSFL--QERFRRDILHRAVIYEADNDRQGTASSKRRNEITCSGRKL 69

Query: 331 RPQKGSGRARLGDANSPHMDNEIKAHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNL 510
             QKG+G AR+GDA+SP      K+H  K P D+ST L +++Y+  ++ A +  +    L
Sbjct: 70  YRQKGTGHARVGDASSPIRRGGAKSHGPK-PRDFSTKLQTQVYNLAMRIALSTRFINNEL 128

Query: 511 NVVENELDFQYGYDIITQLFVSVHNLNKL-----NLLFITNEPRDNLMESIKKFYINEKE 675
            ++EN ++        T++ + V   +KL       LF+ N   DN        Y  ++ 
Sbjct: 129 TILENPINLSQPK---TRILLEVLKQHKLGHEYGKALFVLN---DN--------YFEDES 174

Query: 676 FNSXXXXXXXXXXXXXXXXVLTKEDVEVRDILRAHRVFIESSALQWFITK 825
             +                +   E  +VRD L+  ++FI+S A+   + K
Sbjct: 175 LKNNNLLLASRQLGYHCSFIPVGE-FQVRDALKFGKLFIDSEAMSLIVEK 223


>O17005|T23B12.2|O17005 (TrEMBL: Caenorhabditis elegans)
           Hypothetical protein.
          Length = 299

 Score = 58.2 bits (139), Expect = 1e-07
 Identities = 41/145 (28%), Positives = 66/145 (45%)
 Frame = +1

Query: 112 FAKPPSYTLAQLREFPSLEPKTFIPLPTTFFNTEKPIRRDILWSCVTYEADKARVGSNYA 291
           F K P   ++ L      E    + L    F T   I  DIL   +T+++    V     
Sbjct: 45  FIKTPQAWVSNLDTIED-EKLGLVDLHPDIFRTSPRI--DILHRNLTWQSVYRNVQMTKM 101

Query: 292 ILKSDSPYSNRKLRPQKGSGRARLGDANSPHMDNEIKAHAIKGPHDWSTDLPSKIYSRGI 471
           + K++ P   RK  PQK +GRA +G   SP       A+ ++GP  W   LP  +  +G+
Sbjct: 102 LTKAEMPGGGRKPWPQKKTGRAHVGSIRSPQFIRGGFANGVRGPRTWFYMLPDAVRIQGL 161

Query: 472 QNAFTMHYKQGNLNVVENELDFQYG 546
             A T+ + Q +L++V+   + Q G
Sbjct: 162 CVALTLKHTQDDLHIVDKIQNLQNG 186


>Q8EUB4|MYPE10170|Q8EUB4 (TrEMBL: Mycoplasma penetrans) Ribosomal
           protein L4.
          Length = 213

 Score = 57.4 bits (137), Expect = 2e-07
 Identities = 39/151 (25%), Positives = 72/151 (47%), Gaps = 1/151 (0%)
 Frame = +1

Query: 202 FNTEKPIRRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKGSGRARLGDANSP 381
           F ++K I    +++ V  E   +R  +   + K++     RK   QK +GRAR G   +P
Sbjct: 25  FISDKKINHQEIFNSVLVEEANSRQSTASTLTKAEVRGGGRKPYKQKHTGRARQGSIRNP 84

Query: 382 HMDNEIKAHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVENELDF-QYGYDII 558
           H     +A       +++    SK Y    Q+A T+   +  LN++ N++D  +     I
Sbjct: 85  HYVGGGRAFGPSPEKNYTLKQNSKAYKLAFQSAMTLKLNEQGLNLLVNKIDMKEPSTKTI 144

Query: 559 TQLFVSVHNLNKLNLLFITNEPRDNLMESIK 651
           +++   V   NK  +LF+ N+  +N ++S K
Sbjct: 145 SKMLKKVSYENK-KVLFVINDKNENFLKSCK 174


>Q9EVT8|RPL4|Q9EVT8 (TrEMBL: Thermus thermophilus) Ribosomal protein
           L4.
          Length = 210

 Score = 55.8 bits (133), Expect = 6e-07
 Identities = 34/101 (33%), Positives = 50/101 (49%)
 Frame = +1

Query: 220 IRRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKGSGRARLGDANSPHMDNEI 399
           I   +LW  V ++  K R G+     + +  YS RK+ PQK +GRAR GD  +P      
Sbjct: 28  INPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPIFVGGG 87

Query: 400 KAHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVE 522
                K P D+S  LP K+  +G+  A     ++G L +VE
Sbjct: 88  VVFGPK-PRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVE 127


>P49665|RPLD|RL4_THETH (SP: Thermus thermophilus) 50S ribosomal
           protein L4.
          Length = 210

 Score = 55.8 bits (133), Expect = 6e-07
 Identities = 34/101 (33%), Positives = 50/101 (49%)
 Frame = +1

Query: 220 IRRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKGSGRARLGDANSPHMDNEI 399
           I   +LW  V ++  K R G+     + +  YS RK+ PQK +GRAR GD  +P      
Sbjct: 28  INPHLLWEVVRWQLAKRRRGTASTKTRGEVAYSGRKIWPQKHTGRARHGDIGAPIFVGGG 87

Query: 400 KAHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVE 522
                K P D+S  LP K+  +G+  A     ++G L +VE
Sbjct: 88  VVFGPK-PRDYSYTLPKKVRKKGLAMAVADRAREGKLLLVE 127


>Q9ZI49|RPLD|RL4_AQUPY (SP: Aquifex pyrophilus) 50S ribosomal
           protein L4.
          Length = 199

 Score = 53.9 bits (128), Expect = 2e-06
 Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 1/197 (0%)
 Frame = +1

Query: 220 IRRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKGSGRARLGDANSPHMDNEI 399
           +++ +LW  V ++  K R G++    + +  YS RK+ PQKG+G AR G+          
Sbjct: 17  VKKHVLWEVVKWQLAKRRQGTHSTKTRGEVAYSGRKILPQKGTGNARHGERGVNIFVGGG 76

Query: 400 KAHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVEN-ELDFQYGYDIITQLFVS 576
            AH  K P D+   LP K+   G++ A +   +   +  V+N +L  Q       + F+ 
Sbjct: 77  VAHGPK-PRDYEYPLPKKVRKLGLKMALSDKAQNDAIMFVDNIDLGEQPKTKKAVE-FLK 134

Query: 577 VHNLNKLNLLFITNEPRDNLMESIKKFYINEKEFNSXXXXXXXXXXXXXXXXVLTKEDVE 756
              ++K  LL +  E  + L +S +                           VL  E + 
Sbjct: 135 NLGVDKETLLIVIPEKNEVLYKSFRNL---------------------QNVRVLLPEGLN 173

Query: 757 VRDILRAHRVFIESSAL 807
           V D+L A+++ I    L
Sbjct: 174 VYDVLWANKLVIHKECL 190


>O66432|RPLD|RL4_AQUAE (SP: Aquifex aeolicus) 50S ribosomal protein
           L4.
          Length = 199

 Score = 52.8 bits (125), Expect = 5e-06
 Identities = 29/102 (28%), Positives = 51/102 (50%)
 Frame = +1

Query: 220 IRRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKGSGRARLGDANSPHMDNEI 399
           +++ +LW  V ++  K R G++    + +  YS RK+ PQKG+G AR G+          
Sbjct: 17  VKKHVLWEVVKWQLAKRRQGTHSTKTRGEVAYSGRKILPQKGTGNARHGERGVNIFVGGG 76

Query: 400 KAHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVEN 525
            AH  K P D+   LP ++   G++ A +   +   +  V+N
Sbjct: 77  VAHGPK-PRDYEYPLPKRVRKLGLKMALSDKARNNAIIFVDN 117


>Q9A8V2|CC1249|Q9A8V2 (TrEMBL: Caulobacter crescentus) Ribosomal
           protein L4.
          Length = 212

 Score = 51.6 bits (122), Expect = 1e-05
 Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
 Frame = +1

Query: 220 IRRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKGSGRARLGDANSPHMDNEI 399
           IR DIL   VT++  K R G++   ++++   +++K+  QKG+G AR G   +       
Sbjct: 28  IRGDILQRVVTWQLAKRRSGNHKIQVRNEVSRTSKKMYKQKGTGGARHGSRRAAQFVGGA 87

Query: 400 KAHAIKGP--HDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVEN 525
           KAH   GP     + DLP KI +  +++A +   K G+L VV++
Sbjct: 88  KAH---GPVVRSHAFDLPKKIRALALRHALSSKAKAGSLVVVDS 128


>Q89J85|RPLD|Q89J85 (TrEMBL: Bradyrhizobium japonicum) 50S ribosomal
           protein L4.
          Length = 220

 Score = 50.8 bits (120), Expect = 2e-05
 Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
 Frame = +1

Query: 223 RRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKGSGRARLGDANSPHMDNEIK 402
           R+DI+  CV ++ +K + G++ A  +++   + +K+  QKG+G AR G A  P      +
Sbjct: 42  RQDIIARCVQWQLNKRQAGTHKAKGRAEIWRTGKKMYKQKGTGGARHGSARVPQFRGGGR 101

Query: 403 AHAIKGP--HDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVE 522
           A    GP     +TDLP K+ +  +++A +   K G+L V++
Sbjct: 102 AF---GPVVRSHATDLPKKVRALALKHALSAKAKDGDLLVID 140


>P38516|RPLD|RL4_THEMA (SP: Thermotoga maritima) 50S ribosomal
           protein L4.
          Length = 235

 Score = 50.8 bits (120), Expect = 2e-05
 Identities = 29/99 (29%), Positives = 48/99 (48%)
 Frame = +1

Query: 229 DILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKGSGRARLGDANSPHMDNEIKAH 408
           D++W  V  +    R G+     + +     RK  PQK +GRAR G   SP   +    H
Sbjct: 31  DVMWRYVDMQLSNRRAGTASTKTRGEVSGGGRKPWPQKHTGRARHGSIRSPIWRHGGVVH 90

Query: 409 AIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVEN 525
             K P DWS  L  K+    +++A ++ Y++  L V+++
Sbjct: 91  GPK-PRDWSKKLNKKMKKLALRSALSVKYRENKLLVLDD 128


>Q9BW07||Q9BW07 (TrEMBL: Homo sapiens (Human)) Similar to CGI-28
           protein.
          Length = 263

 Score = 50.1 bits (118), Expect = 3e-05
 Identities = 30/101 (29%), Positives = 51/101 (50%)
 Frame = +1

Query: 223 RRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKGSGRARLGDANSPHMDNEIK 402
           R DIL     ++ +  R+       +++     RK  PQKG+GRAR G   SP       
Sbjct: 92  RLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGV 151

Query: 403 AHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVEN 525
           AH  +GP  +   LP K+ + G++ A T+   Q +L+++++
Sbjct: 152 AHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDS 192


>Q9BYD3|MRPL4|Q9BYD3 (TrEMBL: Homo sapiens (Human)) Mitochondrial
           ribosomal protein L4 (L4mt).
          Length = 311

 Score = 50.1 bits (118), Expect = 3e-05
 Identities = 30/101 (29%), Positives = 51/101 (50%)
 Frame = +1

Query: 223 RRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKGSGRARLGDANSPHMDNEIK 402
           R DIL     ++ +  R+       +++     RK  PQKG+GRAR G   SP       
Sbjct: 92  RLDILHQVAMWQKNFKRISYAKTKTRAEVRGGGRKPWPQKGTGRARHGSIRSPLWRGGGV 151

Query: 403 AHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVEN 525
           AH  +GP  +   LP K+ + G++ A T+   Q +L+++++
Sbjct: 152 AHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQDDLHIMDS 192


>Q811L8||Q811L8 (TrEMBL: Mus musculus (Mouse)) Similar to
           mitochondrial ribosomal protein L4 (Fragment).
          Length = 351

 Score = 48.5 bits (114), Expect = 9e-05
 Identities = 30/101 (29%), Positives = 50/101 (49%)
 Frame = +1

Query: 223 RRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKGSGRARLGDANSPHMDNEIK 402
           R DI+     ++ +  R+       +++     RK   QKGSGRAR G   SP       
Sbjct: 149 RLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKPWQQKGSGRARHGSIRSPLWRGGGV 208

Query: 403 AHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVEN 525
           AH  +GP  +   LP K+ + G++ A T+   Q +L++V++
Sbjct: 209 AHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDLHIVDS 249


>Q8JZU9|MRPL4|Q8JZU9 (TrEMBL: Mus musculus (Mouse)) Similar to
           mitochondrial ribosomal protein L4 (Fragment).
          Length = 306

 Score = 48.5 bits (114), Expect = 9e-05
 Identities = 30/101 (29%), Positives = 50/101 (49%)
 Frame = +1

Query: 223 RRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKGSGRARLGDANSPHMDNEIK 402
           R DI+     ++ +  R+       +++     RK   QKGSGRAR G   SP       
Sbjct: 104 RLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKPWQQKGSGRARHGSIRSPLWRGGGV 163

Query: 403 AHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVEN 525
           AH  +GP  +   LP K+ + G++ A T+   Q +L++V++
Sbjct: 164 AHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDLHIVDS 204


>Q9DCU6|MRPL4|Q9DCU6 (TrEMBL: Mus musculus (Mouse)) 1110017G11Rik
           protein (Mitochondrial ribosomal protein L4) (L4mt).
          Length = 294

 Score = 48.5 bits (114), Expect = 9e-05
 Identities = 30/101 (29%), Positives = 50/101 (49%)
 Frame = +1

Query: 223 RRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKGSGRARLGDANSPHMDNEIK 402
           R DI+     ++ +  R+       +++     RK   QKGSGRAR G   SP       
Sbjct: 92  RLDIVHQVAIWQRNFRRISYANTKTRAEVSGGGRKPWQQKGSGRARHGSIRSPLWRGGGV 151

Query: 403 AHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVEN 525
           AH  +GP  +   LP K+ + G++ A T+   Q +L++V++
Sbjct: 152 AHGPRGPTSYYYMLPMKVRALGLKVALTVKLMQDDLHIVDS 192


>Q8IB54|PF08_0038|Q8IB54 (TrEMBL: Plasmodium falciparum (isolate
           3D7)) Hypothetical protein.
          Length = 568

 Score = 47.8 bits (112), Expect = 2e-04
 Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 1/119 (0%)
 Frame = +1

Query: 178 FIPLPTTFFNTEKPIRRDILWSCVT-YEADKARVGSNYAILKSDSPYSNRKLRPQKGSGR 354
           +I +P   F    PIR DIL  C   Y    A       + K + P S +K R QK SG+
Sbjct: 191 YISVPNDIFGL--PIRSDILHKCYYFYRTALAGYTERMQLYKWEWPGSTKKYRSQKKSGK 248

Query: 355 ARLGDANSPHMDNEIKAHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVENEL 531
           AR+    +      +K H I+ P D  T++  K   +G++   +  + Q  + VV+N L
Sbjct: 249 ARMNWRKTCGRYLGVKNHPIR-PFDQKTNINRKFLWKGMKILLSAKFAQDQIKVVDNFL 306


>Q8YHN9|BMEI0758|Q8YHN9 (TrEMBL: Brucella melitensis) LSU ribosomal
           protein L1E (= L4P).
          Length = 201

 Score = 47.4 bits (111), Expect = 2e-04
 Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
 Frame = +1

Query: 223 RRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKGSGRARLGDANSPHMDNEIK 402
           R DIL   V ++  + + GS+ A  + D   +  K+  QKG+GRAR   A +P      +
Sbjct: 28  RDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSKMYKQKGTGRARHHSARAPQFRGGGQ 87

Query: 403 AHA-IKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVEN 525
           AH  +   HD   DLP K+ + G+++A +   K  +L ++++
Sbjct: 88  AHGPVVRNHD--HDLPKKVRALGLRHALSAKAKASDLIIIDD 127


>Q8G077|RPLD|Q8G077 (TrEMBL: Brucella suis) Ribosomal protein L4.
          Length = 206

 Score = 47.4 bits (111), Expect = 2e-04
 Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 1/102 (0%)
 Frame = +1

Query: 223 RRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKGSGRARLGDANSPHMDNEIK 402
           R DIL   V ++  + + GS+ A  + D   +  K+  QKG+GRAR   A +P      +
Sbjct: 28  RDDILQRVVRWQLARRQQGSHKAQGRGDVSRTGSKMYKQKGTGRARHHSARAPQFRGGGQ 87

Query: 403 AHA-IKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVEN 525
           AH  +   HD   DLP K+ + G+++A +   K  +L ++++
Sbjct: 88  AHGPVVRNHD--HDLPKKVRALGLRHALSAKAKASDLIIIDD 127


>Q9H4N2||Q9H4N2 (TrEMBL: Homo sapiens (Human)) Clone CDABP0091 mRNA
           sequence.
          Length = 211

 Score = 46.6 bits (109), Expect = 3e-04
 Identities = 25/68 (36%), Positives = 39/68 (57%)
 Frame = +1

Query: 322 RKLRPQKGSGRARLGDANSPHMDNEIKAHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQ 501
           RK  PQKG+GRAR G   SP       AH  +GP  +   LP K+ + G++ A T+   Q
Sbjct: 25  RKPWPQKGTGRARHGSIRSPLWRGGGVAHGPRGPTSYYYMLPMKVRALGLKVALTVKLAQ 84

Query: 502 GNLNVVEN 525
            +L+++++
Sbjct: 85  DDLHIMDS 92


>P57590|RPLD|RL4_BUCAI (SP: symbiotic bacterium)) 50S ribosomal
           protein L4.
          Length = 201

 Score = 46.2 bits (108), Expect = 5e-04
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 1/147 (0%)
 Frame = +1

Query: 247 VTYEADKARVGSNYAILKSDSPYSNRKLRPQKGSGRARLGDANSPHMDNEIKAHAIKGPH 426
           + Y A   R G+     +++   S RK   QKG+GRAR G   SP   +     A K P 
Sbjct: 33  IAYSAS-TRQGTRAQKSRAEVSGSGRKPWRQKGTGRARAGSFRSPIWRSGGVTFAAK-PQ 90

Query: 427 DWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVENELDFQYGYDIITQLFVSVHNLNKLNLL 606
           + S  +  K+Y   +++ F+   +Q  L V EN   F         L   + ++N  N+L
Sbjct: 91  EHSQKVNKKMYRGALKSIFSELIRQKRLIVFEN---FSLDAPKTKLLVQKLKDINLKNVL 147

Query: 607 FITNEPRDNLMESIKKFY-INEKEFNS 684
            +TN+  +NL  + +  Y ++ K+ +S
Sbjct: 148 IVTNKIDNNLFLASRNLYSVDVKDVHS 174


>Q8NT08|CGL0507|Q8NT08 (TrEMBL: Corynebacterium glutamicum
           (Brevibacterium flavum)) Ribosomal protein L4.
          Length = 218

 Score = 46.2 bits (108), Expect = 5e-04
 Identities = 37/147 (25%), Positives = 61/147 (41%)
 Frame = +1

Query: 181 IPLPTTFFNTEKPIRRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKGSGRAR 360
           + LP   F+ E  +   +L   V  +   AR G++    + +     RK   QKG+GRAR
Sbjct: 19  VELPAEIFDREVSVA--LLHQVVNAQLAAARQGTHSTKTRGEVRGGGRKPFRQKGTGRAR 76

Query: 361 LGDANSPHMDNEIKAHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVENELDFQ 540
            G   +PH      +H  K P D+S   P K+    +  A +   +   ++VV   +  Q
Sbjct: 77  QGSIRAPHFTGGGISHGPK-PRDYSQRTPKKMIKAALYGALSDRARNARIHVVSELVPGQ 135

Query: 541 YGYDIITQLFVSVHNLNKLNLLFITNE 621
                  + F+      K  LL ++ E
Sbjct: 136 TPSTKSAKAFIERLTERKSVLLVVSRE 162


>Q9FA03||Q9FA03 (TrEMBL: Brachyspira pilosicoli) L4 ribosomal
           protein.
          Length = 215

 Score = 46.2 bits (108), Expect = 5e-04
 Identities = 28/102 (27%), Positives = 48/102 (47%)
 Frame = +1

Query: 220 IRRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKGSGRARLGDANSPHMDNEI 399
           +  ++L+  +  E    R G++    +++     +K   QKG+GRAR G   SP      
Sbjct: 27  VNNNLLYEAIKNELANRRQGTHSTKTRAEVSGGGKKPWRQKGTGRARAGSTRSPIWVGGG 86

Query: 400 KAHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVEN 525
           K H  K P D+S  LP K+  + + +  ++ Y    L V E+
Sbjct: 87  KTHTPK-PRDYSYRLPKKMKRKALLSVLSLKYGNNVLKVFED 127


>Q8VY61|AT2G20060|Q8VY61 (TrEMBL: Arabidopsis thaliana (Mouse-ear
           cress)) 50S ribosomal protein L4.
          Length = 300

 Score = 45.8 bits (107), Expect = 6e-04
 Identities = 34/120 (28%), Positives = 56/120 (46%)
 Frame = +1

Query: 166 EPKTFIPLPTTFFNTEKPIRRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKG 345
           E K F+ L    F+   PIR+DI+ + V ++  K + G++     S+   + RK   QKG
Sbjct: 99  EEKGFMVLAGDVFDV--PIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRKPWNQKG 156

Query: 346 SGRARLGDANSPHMDNEIKAHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVEN 525
           +GRAR G    P        H  K P   +  +  ++   G++ A T    +G L V ++
Sbjct: 157 TGRARHGTLRGPQFRGGCVMHGPK-PRSHAIKMNKQVRRLGLKIALTARAAEGKLLVFDD 215


>Q8LE97||Q8LE97 (TrEMBL: Arabidopsis thaliana (Mouse-ear cress)) 50S
           ribosomal protein L4.
          Length = 300

 Score = 45.8 bits (107), Expect = 6e-04
 Identities = 34/120 (28%), Positives = 56/120 (46%)
 Frame = +1

Query: 166 EPKTFIPLPTTFFNTEKPIRRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKG 345
           E K F+ L    F+   PIR+DI+ + V ++  K + G++     S+   + RK   QKG
Sbjct: 99  EEKGFMVLAGDVFDV--PIRKDIIHNVVRWQLAKRQQGTHSTKTLSEVSGTGRKPWNQKG 156

Query: 346 SGRARLGDANSPHMDNEIKAHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVEN 525
           +GRAR G    P        H  K P   +  +  ++   G++ A T    +G L V ++
Sbjct: 157 TGRARHGTLRGPQFRGGCVMHGPK-PRSHAIKMNKQVRRLGLKIALTARAAEGKLLVFDD 215


>P95050|RPLD|RL4_MYCTU (SP: Mycobacterium bovis) 50S ribosomal
           protein L4.
          Length = 223

 Score = 45.8 bits (107), Expect = 6e-04
 Identities = 31/120 (25%), Positives = 53/120 (44%)
 Frame = +1

Query: 181 IPLPTTFFNTEKPIRRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKGSGRAR 360
           I LP   F+   P    ++   VT +   AR G++    + +     RK   QKG+GRAR
Sbjct: 24  IELPAELFDV--PANIALMHQVVTAQRAAARQGTHSTKTRGEVSGGGRKPYRQKGTGRAR 81

Query: 361 LGDANSPHMDNEIKAHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVENELDFQ 540
            G   +P        H  K P D+S   P K+ +  ++ A +   + G ++ +   ++ Q
Sbjct: 82  QGSTRAPQFTGGGVVHGPK-PRDYSQRTPKKMIAAALRGALSDRARNGRIHAITELVEGQ 140


>Q92QG9|RPLD|Q92QG9 (TrEMBL: Rhizobium meliloti (Sinorhizobium
           meliloti)) Probable 50S ribosomal protein L4.
          Length = 206

 Score = 45.4 bits (106), Expect = 8e-04
 Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 2/103 (1%)
 Frame = +1

Query: 223 RRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKGSGRARLGDANSPHMDNEIK 402
           R DI+   V ++  K + G++ +  +++   +  K+  QKG+GRAR   A +P      K
Sbjct: 28  REDIIARVVRWQLAKRQQGTHKSKGRAEVSRTGAKMYKQKGTGRARHHSARAPQFRGGGK 87

Query: 403 AHAIKGP--HDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVEN 525
           AH   GP     + DLP KI + G+++A +   K  ++ V+++
Sbjct: 88  AH---GPVVRSHAHDLPKKIRALGLRHALSAKLKAEDIIVIDD 127


>Q98N56|MLR0292|Q98N56 (TrEMBL: Rhizobium loti (Mesorhizobium loti))
           50S ribosomal protein L4.
          Length = 206

 Score = 45.4 bits (106), Expect = 8e-04
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
 Frame = +1

Query: 223 RRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKGSGRARLGDANSPHMDNEIK 402
           R DIL   V ++  K + G++ A  +++   +  K+  QKG+GRAR   A +P      K
Sbjct: 28  REDILQRVVRWQLAKKQQGTHKAKGRAEIARTGAKMYKQKGTGRARHHSARAPQFRGGGK 87

Query: 403 AHAIKGP--HDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVE 522
           AH   GP       DLP  + + G+++A +   K  ++ V++
Sbjct: 88  AH---GPVVRSHEHDLPKNVRALGLKHALSAKAKSASIIVID 126


>Q8UE19|RPLD|Q8UE19 (TrEMBL: Agrobacterium tumefaciens (strain C58 /
           ATCC 33970)) 50S ribosomal protein L4.
          Length = 206

 Score = 45.1 bits (105), Expect = 0.001
 Identities = 31/102 (30%), Positives = 52/102 (50%), Gaps = 2/102 (1%)
 Frame = +1

Query: 223 RRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRPQKGSGRARLGDANSPHMDNEIK 402
           R+DIL   V ++  K + G++    +S+   +  K+  QKG+GRAR   A +P      K
Sbjct: 28  RQDILARMVRWQLAKKQQGTHKTKNRSEVSRTGAKMYKQKGTGRARHHSARAPQFRGGGK 87

Query: 403 AHAIKGP--HDWSTDLPSKIYSRGIQNAFTMHYKQGNLNVVE 522
           AH   GP     + DLP K+ +  +++A +   K   L +V+
Sbjct: 88  AH---GPVVRSHAHDLPKKVRALALRHALSAKLKAEELIIVD 126


>Q82DP4|RPLD|Q82DP4 (TrEMBL: Streptomyces avermitilis) Putative
           ribosomal protein L4.
          Length = 221

 Score = 45.1 bits (105), Expect = 0.001
 Identities = 32/126 (25%), Positives = 56/126 (44%)
 Frame = +1

Query: 157 PSLEPKTFIPLPTTFFNTEKPIRRDILWSCVTYEADKARVGSNYAILKSDSPYSNRKLRP 336
           PS +    + LP   F+ EK I   +L   V  +   AR G++    + +     +K   
Sbjct: 9   PSGDNAGTVELPAEIFDVEK-ISIPLLHQVVVAQLAAARQGTHKVKRRGEVRGGGKKPYR 67

Query: 337 QKGSGRARLGDANSPHMDNEIKAHAIKGPHDWSTDLPSKIYSRGIQNAFTMHYKQGNLNV 516
           QKG+GRAR G   +P        H    P D+S   P K+ +  +++A T   +   ++V
Sbjct: 68  QKGTGRARQGSTRAPQFAGGGVVHG-PTPRDYSQRTPKKMKAAALRHALTDRARNARIHV 126

Query: 517 VENELD 534
           +   ++
Sbjct: 127 ITGVIE 132


  Database: sptrembl
    Posted date:  Oct 14, 2003  6:47 PM
  Number of letters in database: 339,323,595
  Number of sequences in database:  1,070,300
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 195,026,746
Number of Sequences: 1070300
Number of extensions: 3649222
Number of successful extensions: 9477
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9449
length of database: 339,323,595
effective HSP length: 120
effective length of database: 210,887,595
effective search space used: 33109352415
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)