BLASTX 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Candida_albicans_chr7-f2-127379-128182-3
         (801 letters)

Database: sptrembl 
           1,070,300 sequences; 339,323,595 total letters

Searching.................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

O74978|SPCC1827.05C|O74978 (TrEMBL: Schizosaccharomyces pombe (F...   131   8e-30
Q8SAB6||Q8SAB6 (TrEMBL: Elaeis oleifera (Oil palm)) RNA binding ...   124   9e-28
Q8T772||Q8T772 (TrEMBL: Branchiostoma floridae (Florida lancelet...   113   2e-24
Q8JIY8||Q8JIY8 (TrEMBL: Brachydanio rerio (Zebrafish) (Danio rer...   109   4e-23
Q9LZ65|T32M21_200|Q9LZ65 (TrEMBL: Arabidopsis thaliana (Mouse-ea...   108   7e-23
P53927|YNL110C|YNL0_YEAST (SP: Saccharomyces cerevisiae (Baker's...   106   3e-22
Q8TB66||Q8TB66 (TrEMBL: Homo sapiens (Human)) Nucleolar protein ...    98   9e-20
Q9BYG3|NOPP34|Q9BYG3 (TrEMBL: Homo sapiens (Human)) Nucleolar ph...    97   2e-19
Q8BVL4|MKI67IP|Q8BVL4 (TrEMBL: Mus musculus (Mouse)) Nucleolar p...    93   4e-18
Q91VE6|MKI67IP|Q91VE6 (TrEMBL: Mus musculus (Mouse)) Nucleolar p...    93   4e-18
Q8SYV4|CG6937|Q8SYV4 (TrEMBL: Drosophila melanogaster (Fruit fly...    89   6e-17
Q9VCY1|CG6937|Q9VCY1 (TrEMBL: Drosophila melanogaster (Fruit fly...    89   6e-17
Q22135|T04A8.6|Q22135 (TrEMBL: Caenorhabditis elegans) T04A8.6 p...    81   2e-14
Q96ED4||Q96ED4 (TrEMBL: Homo sapiens (Human)) Similar to nucleol...    77   3e-13
Q86H55||Q86H55 (TrEMBL: Dictyostelium discoideum (Slime mold)) H...    62   1e-08
O45577|F56A8.6|O45577 (TrEMBL: Caenorhabditis elegans) F56A8.6 p...    62   1e-08
Q941H8||Q941H8 (TrEMBL: Solanum tuberosum (Potato)) RNA-binding ...    59   5e-08
Q9LXJ8|F3C22_60|Q9LXJ8 (TrEMBL: Arabidopsis thaliana (Mouse-ear ...    59   8e-08
Q8BMV9|MKI67IP|Q8BMV9 (TrEMBL: Mus musculus (Mouse)) Nucleolar p...    58   1e-07
Q9LEB3|RBP47|Q9LEB3 (TrEMBL: Nicotiana plumbaginifolia (Leadwort...    57   2e-07
P93843||P93843 (TrEMBL: Nicotiana tabacum (Common tobacco)) DNA ...    57   2e-07
O48955|QRRBP-1|O48955 (TrEMBL: Nicotiana tabacum (Common tobacco...    57   2e-07
Q8IDB7|PF13_0315|Q8IDB7 (TrEMBL: Plasmodium falciparum (isolate ...    57   2e-07
Q9SD61|F13I12.170|Q9SD61 (TrEMBL: Arabidopsis thaliana (Mouse-ea...    56   4e-07
Q94KA0||Q94KA0 (TrEMBL: Arabidopsis thaliana (Mouse-ear cress)) ...    56   4e-07
Q9LU44|AT5G51300|Q9LU44 (TrEMBL: Arabidopsis thaliana (Mouse-ear...    56   4e-07
Q96E39||Q96E39 (TrEMBL: Homo sapiens (Human)) Similar to RNA bin...    56   4e-07
Q941H9||Q941H9 (TrEMBL: Nicotiana tabacum (Common tobacco)) RNA-...    56   4e-07
P25299|RNA15|RN15_YEAST (SP: Saccharomyces cerevisiae (Baker's y...    55   7e-07
Q8R0F5|2810411A03RIK|Q8R0F5 (TrEMBL: Mus musculus (Mouse)) Simil...    55   1e-06

>O74978|SPCC1827.05C|O74978 (TrEMBL: Schizosaccharomyces pombe
           (Fission yeast)) Putative RNA-binding protein.
          Length = 276

 Score =  131 bits (330), Expect = 8e-30
 Identities = 61/120 (50%), Positives = 91/120 (75%), Gaps = 2/120 (1%)
 Frame = +1

Query: 370 GVIYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAE 549
           GV+Y+GRLP GF E +++ YFSQFG V+ ++++RN+KTG++KHY FIEF+S++VA V AE
Sbjct: 105 GVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSKHYAFIEFESLDVANVVAE 164

Query: 550 TMNNYLLFGHLIKCEVV--ENPHEDTFKHGNRKFKVIPWKKIAKEKHEKSRTEEEWKVLI 723
           TM+NYLL+G L++C+V+  +  HE+ FK  +  FK IP   IA+ +HEK  ++E+   LI
Sbjct: 165 TMHNYLLYGKLLQCKVIPEDQVHENMFKGADVPFKRIPHATIARLQHEKPLSKEKADKLI 224


>Q8SAB6||Q8SAB6 (TrEMBL: Elaeis oleifera (Oil palm)) RNA binding
           protein.
          Length = 218

 Score =  124 bits (312), Expect = 9e-28
 Identities = 58/141 (41%), Positives = 89/141 (63%), Gaps = 2/141 (1%)
 Frame = +1

Query: 373 VIYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAET 552
           V+YIG +P GF E +++ +F QFG +  ++++RN+KTG +KHYGF+EF++ EVAKV A+ 
Sbjct: 56  VLYIGHIPHGFYEEQMQGFFQQFGKIKRLRISRNRKTGKSKHYGFLEFENPEVAKVVADE 115

Query: 553 MNNYLLFGHLIKCEVV--ENPHEDTFKHGNRKFKVIPWKKIAKEKHEKSRTEEEWKVLIA 726
           MNNYLLF H ++  ++  E  H    K  NR+FK + WK IA+++H K RT EE + ++ 
Sbjct: 116 MNNYLLFEHNLQLSLIPPERVHPKLVKGVNRRFKPVDWKAIARKQHNKERTLEEHQRMVK 175

Query: 727 XXXXXXXXXXXXXXXXGIDFD 789
                           GID++
Sbjct: 176 GILKRNEKRHKRIKAAGIDYE 196


>Q8T772||Q8T772 (TrEMBL: Branchiostoma floridae (Florida lancelet)
           (Amphioxus)) Hypothetical protein.
          Length = 253

 Score =  113 bits (283), Expect = 2e-24
 Identities = 57/111 (51%), Positives = 73/111 (65%), Gaps = 2/111 (1%)
 Frame = +1

Query: 370 GVIYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAE 549
           G +++G +P GF E ++K +FSQFG V  V+LAR+KKTG  K YG+IEF+  EVAKV AE
Sbjct: 41  GAVFVGHIPHGFFEPQVKRFFSQFGTVSRVRLARSKKTGGPKGYGYIEFECEEVAKVVAE 100

Query: 550 TMNNYLLFGHLIKCEVV--ENPHEDTFKHGNRKFKVIPWKKIAKEKHEKSR 696
           TMNNYL+F  L+KCE +  E  H  TF   NRKF     +  A  KH K +
Sbjct: 101 TMNNYLMFEKLLKCEFIPTERLHPKTFHGSNRKFLKPTRRSTAIRKHNKPK 151


>Q8JIY8||Q8JIY8 (TrEMBL: Brachydanio rerio (Zebrafish) (Danio
           rerio)) Nopp34 nucleolar phosphoprotein-like protein.
          Length = 269

 Score =  109 bits (272), Expect = 4e-23
 Identities = 57/142 (40%), Positives = 83/142 (58%), Gaps = 2/142 (1%)
 Frame = +1

Query: 370 GVIYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAE 549
           GV+Y+G LP G  E +LK+YF QFG V+ ++++R+KKTG +K YGF+EF+  EVAK+ AE
Sbjct: 45  GVLYVGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAE 104

Query: 550 TMNNYLLFGHLIKCEVV--ENPHEDTFKHGNRKFKVIPWKKIAKEKHEKSRTEEEWKVLI 723
           TMNNYL+   +IKC V+  E  HE  F      FK   +  +   ++ K+ TE++ K + 
Sbjct: 105 TMNNYLMGERIIKCHVIPPEKVHEKLFVGSIAGFKKPKYPAVT--RYNKTHTEDDVKKVG 162

Query: 724 AXXXXXXXXXXXXXXXXGIDFD 789
                            GID+D
Sbjct: 163 TKLLSKESKLRKRLAAKGIDYD 184


>Q9LZ65|T32M21_200|Q9LZ65 (TrEMBL: Arabidopsis thaliana (Mouse-ear
           cress)) Putative RNA binding protein
           (AT5g04600/T32M21_200).
          Length = 222

 Score =  108 bits (270), Expect = 7e-23
 Identities = 55/141 (39%), Positives = 86/141 (60%), Gaps = 2/141 (1%)
 Frame = +1

Query: 373 VIYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAET 552
           V+YIGR+P GF E+E++ +FSQFG V  V++ARNKKTG +KH+GFI+F+  EVA++AA  
Sbjct: 61  VLYIGRIPHGFYETEIEAFFSQFGTVKRVRVARNKKTGKSKHFGFIQFEDPEVAEIAAGA 120

Query: 553 MNNYLLFGHLIKCEVV--ENPHEDTFKHGNRKFKVIPWKKIAKEKHEKSRTEEEWKVLIA 726
           MN+YLL  H++K  V+  EN   + ++     FK +   +I + +  K RT EE + ++ 
Sbjct: 121 MNDYLLMEHMLKVHVIEPENVKPNLWRGFKCNFKPVDSVQIERRQLNKERTLEEHRKMLQ 180

Query: 727 XXXXXXXXXXXXXXXXGIDFD 789
                           GI+++
Sbjct: 181 KIVKKDQKRRKRIEAAGIEYE 201


>P53927|YNL110C|YNL0_YEAST (SP: Saccharomyces cerevisiae (Baker's
           yeast)) Hypothetical 25.4 kDa protein in CYB5-LEU4
           intergenic region.
          Length = 220

 Score =  106 bits (265), Expect = 3e-22
 Identities = 61/130 (46%), Positives = 81/130 (62%), Gaps = 16/130 (12%)
 Frame = +1

Query: 370 GVIYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAE 549
           G+IY+ RLP GF E EL  YF+QFGD+  V+LARNKKTGN++HYGF+EF + E A +A E
Sbjct: 91  GIIYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQE 150

Query: 550 TMNNYLLFGHLIKCEVVEN--PHEDTFKHGNR----KFKVIPWKKI---AKEKHE----- 687
           +MNNYLL GHL++  V+      E  +K+  R    K    P K++    K+KHE     
Sbjct: 151 SMNNYLLMGHLLQVRVLPKGAKIEKLYKYKKRVLVEKGITKPVKQLKDNMKQKHEERIKK 210

Query: 688 --KSRTEEEW 711
             KS  E +W
Sbjct: 211 LAKSGIEFKW 220


>Q8TB66||Q8TB66 (TrEMBL: Homo sapiens (Human)) Nucleolar protein
           interacting with the FHA domain of pKi-67.
          Length = 293

 Score = 98.2 bits (243), Expect = 9e-20
 Identities = 46/114 (40%), Positives = 75/114 (65%), Gaps = 2/114 (1%)
 Frame = +1

Query: 370 GVIYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAE 549
           GV+Y+  LP+   E+++ +YFSQFG V   +L+R+K+TGN+K Y F+EF+S +VAK+ AE
Sbjct: 45  GVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAE 104

Query: 550 TMNNYLLFGHLIKCEVV--ENPHEDTFKHGNRKFKVIPWKKIAKEKHEKSRTEE 705
           TMNNYL    L++C  +  E  H++ FK  N  FK   ++ + +    ++ T++
Sbjct: 105 TMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYQSVKRYNRNRTLTQK 158


>Q9BYG3|NOPP34|Q9BYG3 (TrEMBL: Homo sapiens (Human)) Nucleolar
           phosphoprotein Nopp34 (Nucleolar protein interacting
           with the FHA domain of pKi-67).
          Length = 293

 Score = 97.4 bits (241), Expect = 2e-19
 Identities = 46/114 (40%), Positives = 74/114 (64%), Gaps = 2/114 (1%)
 Frame = +1

Query: 370 GVIYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAE 549
           GV+Y+  LP+   E+++ +YFSQFG V   +L+R+K+TGN+K Y F+EF+S +VAK+ AE
Sbjct: 45  GVVYVRHLPNLLDETQIFSYFSQFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAE 104

Query: 550 TMNNYLLFGHLIKCEVV--ENPHEDTFKHGNRKFKVIPWKKIAKEKHEKSRTEE 705
           TMNNYL    L++C  +  E  H++ FK  N  FK   +  + +    ++ T++
Sbjct: 105 TMNNYLFGERLLECHFMPPEKVHKELFKDWNIPFKQPSYPSVKRYNRNRTLTQK 158


>Q8BVL4|MKI67IP|Q8BVL4 (TrEMBL: Mus musculus (Mouse)) Nucleolar
           protein MNIFK.
          Length = 317

 Score = 92.8 bits (229), Expect = 4e-18
 Identities = 43/94 (45%), Positives = 63/94 (67%), Gaps = 2/94 (2%)
 Frame = +1

Query: 370 GVIYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAE 549
           GV+Y+G LPS   ES +  Y +QFGD+   +L+R+K+TGN+K Y F+EF+S +VAK+ AE
Sbjct: 47  GVVYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAE 106

Query: 550 TMNNYLLFGHLIKCEVV--ENPHEDTFKHGNRKF 645
           TM+NYL    L+ C+ +  +  H+D F   N  F
Sbjct: 107 TMDNYLFGERLLSCKFMPRKKVHKDLFSQRNALF 140


>Q91VE6|MKI67IP|Q91VE6 (TrEMBL: Mus musculus (Mouse)) Nucleolar
           protein mNIFK (RNA binding protein).
          Length = 317

 Score = 92.8 bits (229), Expect = 4e-18
 Identities = 43/94 (45%), Positives = 63/94 (67%), Gaps = 2/94 (2%)
 Frame = +1

Query: 370 GVIYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAE 549
           GV+Y+G LPS   ES +  Y +QFGD+   +L+R+K+TGN+K Y F+EF+S +VAK+ AE
Sbjct: 47  GVVYLGHLPSTLSESHIYNYCAQFGDISRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAE 106

Query: 550 TMNNYLLFGHLIKCEVV--ENPHEDTFKHGNRKF 645
           TM+NYL    L+ C+ +  +  H+D F   N  F
Sbjct: 107 TMDNYLFGERLLSCKFMPRKKVHKDLFSQRNALF 140


>Q8SYV4|CG6937|Q8SYV4 (TrEMBL: Drosophila melanogaster (Fruit fly))
           RE32504p.
          Length = 170

 Score = 89.0 bits (219), Expect = 6e-17
 Identities = 47/111 (42%), Positives = 68/111 (61%)
 Frame = +1

Query: 370 GVIYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAE 549
           GV+ +  LP GF E +L+ YF QFG V+ V+LAR+ +TGN+K Y F+EF+  EVAKVAA+
Sbjct: 51  GVVIVKHLPHGFFEQQLRQYFRQFGRVLRVRLARSLRTGNSKGYAFVEFEYPEVAKVAAD 110

Query: 550 TMNNYLLFGHLIKCEVVENPHEDTFKHGNRKFKVIPWKKIAKEKHEKSRTE 702
           TM+NYL+F  ++K   +  P + T        K +   K  KE +    T+
Sbjct: 111 TMDNYLMFQKVVKATYIP-PEKQTLNFFRTSLKKVV-NKAGKEIYVSDLTK 159


>Q9VCY1|CG6937|Q9VCY1 (TrEMBL: Drosophila melanogaster (Fruit fly))
           CG6937 protein.
          Length = 356

 Score = 89.0 bits (219), Expect = 6e-17
 Identities = 47/111 (42%), Positives = 68/111 (61%)
 Frame = +1

Query: 370 GVIYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAE 549
           GV+ +  LP GF E +L+ YF QFG V+ V+LAR+ +TGN+K Y F+EF+  EVAKVAA+
Sbjct: 51  GVVIVKHLPHGFFEQQLRQYFRQFGRVLRVRLARSLRTGNSKGYAFVEFEYPEVAKVAAD 110

Query: 550 TMNNYLLFGHLIKCEVVENPHEDTFKHGNRKFKVIPWKKIAKEKHEKSRTE 702
           TM+NYL+F  ++K   +  P + T        K +   K  KE +    T+
Sbjct: 111 TMDNYLMFQKVVKATYIP-PEKQTLNFFRTSLKKVV-NKAGKEIYVSDLTK 159


>Q22135|T04A8.6|Q22135 (TrEMBL: Caenorhabditis elegans) T04A8.6
           protein.
          Length = 307

 Score = 80.9 bits (198), Expect = 2e-14
 Identities = 36/77 (46%), Positives = 56/77 (72%)
 Frame = +1

Query: 373 VIYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAET 552
           V+ I R+P GF E EL  YF QFG+V+ +++ARN++TGN K + ++ FD+  VA++AAE+
Sbjct: 33  VVKIKRIPFGFFEKELLGYFRQFGNVLRIRVARNRRTGNHKGWAYVGFDNKAVAEIAAES 92

Query: 553 MNNYLLFGHLIKCEVVE 603
           MN YL+F   + C V++
Sbjct: 93  MNGYLMFEQRLGCTVMK 109


>Q96ED4||Q96ED4 (TrEMBL: Homo sapiens (Human)) Similar to nucleolar
           protein interacting with the FHA domain of pKi-67
           (Fragment).
          Length = 227

 Score = 76.6 bits (187), Expect = 3e-13
 Identities = 37/92 (40%), Positives = 58/92 (63%), Gaps = 2/92 (2%)
 Frame = +1

Query: 436 QFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAETMNNYLLFGHLIKCEVV--ENP 609
           QFG V   +L+R+K+TGN+K Y F+EF+S +VAK+ AETMNNYL    L++C  +  E  
Sbjct: 1   QFGTVTRFRLSRSKRTGNSKGYAFVEFESEDVAKIVAETMNNYLFGERLLECHFMPPEKV 60

Query: 610 HEDTFKHGNRKFKVIPWKKIAKEKHEKSRTEE 705
           H++ FK  N  FK   +  + +    ++ T++
Sbjct: 61  HKELFKDWNIPFKQPSYPSVKRYNRNRTLTQK 92


>Q86H55||Q86H55 (TrEMBL: Dictyostelium discoideum (Slime mold))
           Hypothetical protein.
          Length = 269

 Score = 61.6 bits (148), Expect = 1e-08
 Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 2/85 (2%)
 Frame = +1

Query: 376 IYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAETM 555
           I I  +P GF E+E+  +F QFGD+  V++ R   +G      F+ F   EVAK+A E M
Sbjct: 78  ILIREVPKGFYETEIYKFFKQFGDIKCVRVDRTL-SGKFAKCAFVRFFDAEVAKIAKEAM 136

Query: 556 NNYLLFGHLIKCEVVEN--PHEDTF 624
           N Y++FG  +   +++   PH+ +F
Sbjct: 137 NGYIMFGKKLDISIMDGWVPHQSSF 161


>O45577|F56A8.6|O45577 (TrEMBL: Caenorhabditis elegans) F56A8.6
           protein.
          Length = 336

 Score = 61.6 bits (148), Expect = 1e-08
 Identities = 24/73 (32%), Positives = 47/73 (64%)
 Frame = +1

Query: 376 IYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAETM 555
           +++G +     E  +++ FS+ G+V+++K+  +++TG  K YGFIEF  I+ A+VA   +
Sbjct: 20  VFVGNISYDVSEDTIRSIFSKAGNVLSIKMVHDRETGKPKGYGFIEFPDIQTAEVAIRNL 79

Query: 556 NNYLLFGHLIKCE 594
           N Y L G +++ +
Sbjct: 80  NGYELSGRILRVD 92


>Q941H8||Q941H8 (TrEMBL: Solanum tuberosum (Potato)) RNA-binding
           protein precursor.
          Length = 339

 Score = 59.3 bits (142), Expect = 5e-08
 Identities = 31/86 (36%), Positives = 46/86 (53%)
 Frame = +1

Query: 376 IYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAETM 555
           +++G L  G  ES LK  FSQ+G+VI  ++  +++TG ++ +GFI F S E A  A + M
Sbjct: 42  LFVGGLSYGTDESSLKETFSQYGEVIEARVILDRETGRSRGFGFISFPSSEEATSAMQAM 101

Query: 556 NNYLLFGHLIKCEVVENPHEDTFKHG 633
           +   L G  IK         D F  G
Sbjct: 102 DGQDLHGRRIKVNYATEKRRDGFGGG 127


>Q9LXJ8|F3C22_60|Q9LXJ8 (TrEMBL: Arabidopsis thaliana (Mouse-ear
           cress)) Putative RNA binding protein.
          Length = 471

 Score = 58.5 bits (140), Expect = 8e-08
 Identities = 27/79 (34%), Positives = 44/79 (55%)
 Frame = +1

Query: 376 IYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAETM 555
           +Y+G +P+   E +LK +    G+V  V++ R K +G+ K Y F+ F S ++A  A +T+
Sbjct: 94  VYLGGIPTDATEGDLKGFCGSIGEVTEVRIMREKDSGDGKGYAFVTFRSKDLAAEAIDTL 153

Query: 556 NNYLLFGHLIKCEVVENPH 612
           NN    G  IKC   +  H
Sbjct: 154 NNTDFRGKRIKCSTTQAKH 172



 Score = 38.5 bits (88), Expect = 0.089
 Identities = 18/76 (23%), Positives = 31/76 (40%)
 Frame = +1

Query: 376 IYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAETM 555
           +YI  LP    +  LK  F   G ++ V +   K       YGF+ +        A +  
Sbjct: 270 LYIKNLPRDITQERLKALFEHHGKILKVVIPPAKPGKEDSRYGFVHYAERTSVMRALKNT 329

Query: 556 NNYLLFGHLIKCEVVE 603
             Y + GH++ C + +
Sbjct: 330 ERYEIDGHMLDCTLAK 345


>Q8BMV9|MKI67IP|Q8BMV9 (TrEMBL: Mus musculus (Mouse)) Nucleolar
           protein MNIFK (Fragment).
          Length = 76

 Score = 58.2 bits (139), Expect = 1e-07
 Identities = 27/54 (50%), Positives = 36/54 (66%)
 Frame = +1

Query: 433 SQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAETMNNYLLFGHLIKCE 594
           SQF   +     R KKTGN+K Y F+EF+S +VAK+ AETM+NYL    L+ C+
Sbjct: 20  SQFEKALTQIQGRTKKTGNSKGYAFVEFESEDVAKIVAETMDNYLFGERLLSCK 73


>Q9LEB3|RBP47|Q9LEB3 (TrEMBL: Nicotiana plumbaginifolia
           (Leadwort-leaved tobacco)) RNA binding protein 47.
          Length = 428

 Score = 57.4 bits (137), Expect = 2e-07
 Identities = 27/65 (41%), Positives = 43/65 (66%)
 Frame = +1

Query: 376 IYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAETM 555
           I+IG L     ES L + FSQ G+VI+VK+ RNK+TG ++ YGF+EF++   A+   ++ 
Sbjct: 86  IWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSY 145

Query: 556 NNYLL 570
           N  ++
Sbjct: 146 NGTMM 150



 Score = 37.4 bits (85), Expect = 0.20
 Identities = 19/65 (29%), Positives = 36/65 (55%)
 Frame = +1

Query: 376 IYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAETM 555
           I++G L S   + EL+  F+QFG+V++VK+   K        GF++F     A+ A + +
Sbjct: 297 IFVGGLDSEVTDEELRQSFNQFGEVVSVKIPAGKGC------GFVQFSDRSSAQEAIQKL 350

Query: 556 NNYLL 570
           +  ++
Sbjct: 351 SGAII 355



 Score = 32.3 bits (72), Expect = 6.4
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 376 IYIGRLPSGFQESELK-TYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAET 552
           I++G L S   ++ L+ T+ S++  +   K+  +  TG++K YGF+ F        A   
Sbjct: 179 IFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTE 238

Query: 553 MN 558
           MN
Sbjct: 239 MN 240


>P93843||P93843 (TrEMBL: Nicotiana tabacum (Common tobacco)) DNA
           binding protein ACBF.
          Length = 428

 Score = 57.4 bits (137), Expect = 2e-07
 Identities = 27/65 (41%), Positives = 43/65 (66%)
 Frame = +1

Query: 376 IYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAETM 555
           I+IG L     ES L + FSQ G+VI+VK+ RNK+TG ++ YGF+EF++   A+   ++ 
Sbjct: 86  IWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSY 145

Query: 556 NNYLL 570
           N  ++
Sbjct: 146 NGTMM 150



 Score = 37.7 bits (86), Expect = 0.15
 Identities = 19/65 (29%), Positives = 36/65 (55%)
 Frame = +1

Query: 376 IYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAETM 555
           I++G L S   + EL+  F+QFG+V++VK+   K        GF++F     A+ A + +
Sbjct: 297 IFVGGLDSDVTDEELRQSFNQFGEVVSVKIPAGKGC------GFVQFSDRSSAQEAIQKL 350

Query: 556 NNYLL 570
           +  ++
Sbjct: 351 SGAII 355



 Score = 32.3 bits (72), Expect = 6.4
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 376 IYIGRLPSGFQESELK-TYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAET 552
           I++G L S   ++ L+ T+ S++  +   K+  +  TG++K YGF+ F        A   
Sbjct: 179 IFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTE 238

Query: 553 MN 558
           MN
Sbjct: 239 MN 240


>O48955|QRRBP-1|O48955 (TrEMBL: Nicotiana tabacum (Common tobacco))
           Putative RNA binding protein (Fragment).
          Length = 482

 Score = 57.4 bits (137), Expect = 2e-07
 Identities = 27/65 (41%), Positives = 43/65 (66%)
 Frame = +1

Query: 376 IYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAETM 555
           I+IG L     ES L + FSQ G+VI+VK+ RNK+TG ++ YGF+EF++   A+   ++ 
Sbjct: 140 IWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQSY 199

Query: 556 NNYLL 570
           N  ++
Sbjct: 200 NGTMM 204



 Score = 37.7 bits (86), Expect = 0.15
 Identities = 19/65 (29%), Positives = 36/65 (55%)
 Frame = +1

Query: 376 IYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAETM 555
           I++G L S   + EL+  F+QFG+V++VK+   K        GF++F     A+ A + +
Sbjct: 351 IFVGGLDSDVTDEELRQSFNQFGEVVSVKIPAGKGC------GFVQFSDRSSAQEAIQKL 404

Query: 556 NNYLL 570
           +  ++
Sbjct: 405 SGAII 409



 Score = 32.3 bits (72), Expect = 6.4
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 376 IYIGRLPSGFQESELK-TYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAET 552
           I++G L S   ++ L+ T+ S++  +   K+  +  TG++K YGF+ F        A   
Sbjct: 233 IFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMTE 292

Query: 553 MN 558
           MN
Sbjct: 293 MN 294


>Q8IDB7|PF13_0315|Q8IDB7 (TrEMBL: Plasmodium falciparum (isolate
           3D7)) RNA binding protein, putative.
          Length = 509

 Score = 57.4 bits (137), Expect = 2e-07
 Identities = 24/88 (27%), Positives = 51/88 (57%)
 Frame = +1

Query: 376 IYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAETM 555
           ++I  +P+ +Q+++L   FS FG++++ ++A  K TG  + + F+ +DS+E A  A   M
Sbjct: 371 LFIFHVPNEWQQTDLIQAFSPFGELLSARIATEKNTGRNRGFAFVSYDSLESAAAAISQM 430

Query: 556 NNYLLFGHLIKCEVVENPHEDTFKHGNR 639
           N ++     +K  V +   ++  K+ N+
Sbjct: 431 NGFMALNKKLKVTVKKGEEDEMKKYVNQ 458



 Score = 42.7 bits (99), Expect = 0.005
 Identities = 21/62 (33%), Positives = 34/62 (54%)
 Frame = +1

Query: 376 IYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAETM 555
           ++IGR+P   +E +L+  F ++G V  V + R+K T   K   F++  SI  A  A   +
Sbjct: 87  LFIGRVPKNIEEDQLRPIFEEYGIVNEVVIIRDKITNVHKSSAFVKMASISEADNAIRLL 146

Query: 556 NN 561
           NN
Sbjct: 147 NN 148


>Q9SD61|F13I12.170|Q9SD61 (TrEMBL: Arabidopsis thaliana (Mouse-ear
           cress)) Putative RNA binding protein.
          Length = 352

 Score = 56.2 bits (134), Expect = 4e-07
 Identities = 23/73 (31%), Positives = 43/73 (58%)
 Frame = +1

Query: 376 IYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAETM 555
           +Y+G +P    E +L   FSQ+G++++V L R+K TG +K + F+ ++      +A + +
Sbjct: 38  VYVGGIPFDLTEGDLLAVFSQYGEIVDVNLIRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97

Query: 556 NNYLLFGHLIKCE 594
           N  L+ G  IK +
Sbjct: 98  NGALVLGRTIKVD 110


>Q94KA0||Q94KA0 (TrEMBL: Arabidopsis thaliana (Mouse-ear cress))
           Hypothetical protein.
          Length = 804

 Score = 56.2 bits (134), Expect = 4e-07
 Identities = 23/74 (31%), Positives = 43/74 (58%)
 Frame = +1

Query: 376 IYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAETM 555
           +YIG LP   ++  L   FS FG+++  K+ +++ TG +K YGF+++  +++A  A + M
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541

Query: 556 NNYLLFGHLIKCEV 597
           N Y   G  +   +
Sbjct: 542 NGYRFEGRTLAVRI 555


>Q9LU44|AT5G51300|Q9LU44 (TrEMBL: Arabidopsis thaliana (Mouse-ear
           cress)) Similarity to transcription or splicing factor
           (Hypothetical protein).
          Length = 804

 Score = 56.2 bits (134), Expect = 4e-07
 Identities = 23/74 (31%), Positives = 43/74 (58%)
 Frame = +1

Query: 376 IYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAETM 555
           +YIG LP   ++  L   FS FG+++  K+ +++ TG +K YGF+++  +++A  A + M
Sbjct: 482 LYIGFLPPMLEDDGLINLFSSFGEIVMAKVIKDRVTGLSKGYGFVKYADVQMANTAVQAM 541

Query: 556 NNYLLFGHLIKCEV 597
           N Y   G  +   +
Sbjct: 542 NGYRFEGRTLAVRI 555


>Q96E39||Q96E39 (TrEMBL: Homo sapiens (Human)) Similar to RNA
           binding motif protein, X chromosome.
          Length = 390

 Score = 56.2 bits (134), Expect = 4e-07
 Identities = 29/88 (32%), Positives = 48/88 (54%)
 Frame = +1

Query: 370 GVIYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAE 549
           G ++IG L +   E  L+T F ++G ++ V L ++++T  ++ + F+ F+S   AK AA 
Sbjct: 8   GKLFIGGLNTETNEKALETVFGKYGRIVEVLLIKDRETNKSRGFAFVTFESPADAKDAAR 67

Query: 550 TMNNYLLFGHLIKCEVVENPHEDTFKHG 633
            MN   L G  IK E    P  +  +HG
Sbjct: 68  DMNGKSLDGKAIKVEQATKPSFERGRHG 95


>Q941H9||Q941H9 (TrEMBL: Nicotiana tabacum (Common tobacco))
           RNA-binding protein precursor.
          Length = 277

 Score = 56.2 bits (134), Expect = 4e-07
 Identities = 28/71 (39%), Positives = 42/71 (59%)
 Frame = +1

Query: 376 IYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAETM 555
           +++G L  G  ES LK  FSQ+GDVI  ++  ++ TG ++ +GFI F S E A  A + M
Sbjct: 42  LFVGGLSYGTDESSLKEAFSQYGDVIEARVIMDRDTGRSRGFGFISFPSSEEAASALQAM 101

Query: 556 NNYLLFGHLIK 588
           +   L G  I+
Sbjct: 102 DGQDLHGRRIR 112


>P25299|RNA15|RN15_YEAST (SP: Saccharomyces cerevisiae (Baker's
           yeast)) mRNA 3'-end processing protein RNA15.
          Length = 296

 Score = 55.5 bits (132), Expect = 7e-07
 Identities = 27/78 (34%), Positives = 41/78 (52%)
 Frame = +1

Query: 373 VIYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAET 552
           V+Y+G +P    E ++    S  G VIN+K+  + +TG +K Y FIEF  +E +  A   
Sbjct: 19  VVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRN 78

Query: 553 MNNYLLFGHLIKCEVVEN 606
           +N Y L    +KC    N
Sbjct: 79  LNGYQLGSRFLKCGYSSN 96


>Q8R0F5|2810411A03RIK|Q8R0F5 (TrEMBL: Mus musculus (Mouse)) Similar
           to CGI-79 protein (Similar to RNA-binding protein).
          Length = 326

 Score = 54.7 bits (130), Expect = 1e-06
 Identities = 24/77 (31%), Positives = 44/77 (57%)
 Frame = +1

Query: 376 IYIGRLPSGFQESELKTYFSQFGDVINVKLARNKKTGNTKHYGFIEFDSIEVAKVAAETM 555
           I++G LP    E ++   FSQ+G+++N+ L R+KKTG +K + F+ ++      +A +  
Sbjct: 38  IFVGGLPYELTEGDIICVFSQYGEIVNINLVRDKKTGKSKGFCFLCYEDQRSTVLAVDNF 97

Query: 556 NNYLLFGHLIKCEVVEN 606
           N   + G  I+ + V N
Sbjct: 98  NGIKIKGRTIRVDHVSN 114


  Database: sptrembl
    Posted date:  Oct 14, 2003  6:47 PM
  Number of letters in database: 339,323,595
  Number of sequences in database:  1,070,300
  
Lambda     K      H
   0.315    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 120,950,216
Number of Sequences: 1070300
Number of extensions: 1710382
Number of successful extensions: 21026
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 20211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20932
length of database: 339,323,595
effective HSP length: 119
effective length of database: 211,957,895
effective search space used: 31157810565
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)