BLASTX 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Candida_albicans_chr7-f2-92414-95923-44
         (3507 letters)

Database: sptrembl 
           1,070,300 sequences; 339,323,595 total letters

Searching.................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

P22138|RPA2|RPA2_YEAST (SP: Saccharomyces cerevisiae (Baker's ye...  1910   0.0  
Q9P7X8|RPA2|RPA2_SCHPO (SP: Schizosaccharomyces pombe (Fission y...  1606   0.0  
O74633|ACR-2|RPA2_NEUCR (SP: Neurospora crassa) DNA-directed RNA...  1497   0.0  
P70700|POLR1B|RPA2_MOUSE (SP: Mus musculus (Mouse)) DNA-directed...   975   0.0  
Q9H9Y6|POLR1B|RPA2_HUMAN (SP: Homo sapiens (Human)) DNA-directed...   935   0.0  
O54888|POLR1B|RPA2_RAT (SP: Rattus norvegicus (Rat)) DNA-directe...   900   0.0  
Q9VPP3|RPI135|Q9VPP3 (TrEMBL: Drosophila melanogaster (Fruit fly...   877   0.0  
Q27493|F14B4.3|Q27493 (TrEMBL: Caenorhabditis elegans) F14B4.3 p...   876   0.0  
P20028|RPI135|RPA2_DROME (SP: Drosophila melanogaster (Fruit fly...   875   0.0  
P28365|RPA2|RPA2_EUPOC (SP: Euplotes octocarinatus) DNA-directed...   860   0.0  
Q9FXG4|F1N18.2|Q9FXG4 (TrEMBL: Arabidopsis thaliana (Mouse-ear c...   832   0.0  
Q9C8S4|T1P2.15|Q9C8S4 (TrEMBL: Arabidopsis thaliana (Mouse-ear c...   829   0.0  
Q8SSB7|ECU03_0440|Q8SSB7 (TrEMBL: Encephalitozoon cuniculi) DNA-...   736   0.0  
Q8LNU6|OSJNBA0041P03.1|Q8LNU6 (TrEMBL: Oryza sativa (japonica cu...   660   0.0  
Q98S72|RPA2|Q98S72 (TrEMBL: Guillardia theta (Cryptomonas phi)) ...   620   e-176
Q9BSR4|POLR1B|Q9BSR4 (TrEMBL: Homo sapiens (Human)) POLR1B prote...   583   e-165
Q9H6S8||Q9H6S8 (TrEMBL: Homo sapiens (Human)) Hypothetical prote...   502   e-140
Q95JH9||Q95JH9 (TrEMBL: Macaca fascicularis (Crab eating macaque...   465   e-129
Q9NW08|POLR3B|RPC2_HUMAN (SP: Homo sapiens (Human)) DNA-directed...   451   e-125
Q8MRD5|RPIII128|Q8MRD5 (TrEMBL: Drosophila melanogaster (Fruit f...   420   e-116
Q9V649|RPIII128|Q9V649 (TrEMBL: Drosophila melanogaster (Fruit f...   420   e-116
Q8ZYQ9|PAE0665|Q8ZYQ9 (TrEMBL: Pyrobaculum aerophilum) DNA-direc...   420   e-116
Q8SQY8|ECU11_0370|Q8SQY8 (TrEMBL: Encephalitozoon cuniculi) DNA-...   413   e-114
P25167|RPIII128|RPC2_DROME (SP: Drosophila melanogaster (Fruit f...   410   e-113
P22276|RPC2|RPC2_YEAST (SP: Saccharomyces cerevisiae (Baker's ye...   408   e-112
Q10233|RPC2|RPC2_SCHPO (SP: Schizosaccharomyces pombe (Fission y...   404   e-111
Q42877|RPB2|RPB2_LYCES (SP: Lycopersicon esculentum (Tomato)) DN...   404   e-111
P31814|RPOB|RPOB_THECE (SP: Thermococcus celer) DNA-directed RNA...   402   e-110
O59226|PH1546|O59226 (TrEMBL: Pyrococcus horikoshii) 1117AA long...   402   e-110
Q8CFI7||Q8CFI7 (TrEMBL: Mus musculus (Mouse)) Polymerase (RNA) I...   401   e-110

>P22138|RPA2|RPA2_YEAST (SP: Saccharomyces cerevisiae (Baker's yeast))
            DNA-directed RNA polymerase I 135 kDa polypeptide (EC
            2.7.7.6) (A135) (RNA polymerase I subunit 2).
          Length = 1203

 Score = 1910 bits (4948), Expect = 0.0
 Identities = 931/1190 (78%), Positives = 1041/1190 (87%), Gaps = 27/1190 (2%)
 Frame = +1

Query: 19   AKFRTLEREKRFQNPPKDMDSYPLLKDAVAPHVGSFNALMDGPDGGLLNLAVKDIGSKTI 198
            A FRTLERE RF NPPKD  ++PLL++AV PH+GSFNAL +GPDGGLLNL VKDIG K I
Sbjct: 14   ADFRTLERESRFINPPKDKSAFPLLQEAVQPHIGSFNALTEGPDGGLLNLGVKDIGEKVI 73

Query: 199  FDTP--------ETSGRLGNKLKIRVDSVQLAKPSVPANDKLSLNRKTFPSECRERMVTY 354
            FD            SG LGNKL + V+ V +AKP        ++ RK +PSE R+R+ +Y
Sbjct: 74   FDGKPLNSEDEISNSGYLGNKLSVSVEQVSIAKPMSNDGVSSAVERKVYPSESRQRLTSY 133

Query: 355  RSRLMLNVTWSVND-EEEVLEVREAGQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGY 531
            R +L+L + WSVN+ EE + EVR+ G +P+ML+SNRCHL K+SP +LV+ KEESDE+GGY
Sbjct: 134  RGKLLLKLKWSVNNGEENLFEVRDCGGLPVMLQSNRCHLNKMSPYELVQHKEESDEIGGY 193

Query: 532  FIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYL 711
            FIVNGIEKLIRMLIVQRRNHPMAIIRPSF NRGASY+ +GIQIRSVRPDQTSQTNVLHYL
Sbjct: 194  FIVNGIEKLIRMLIVQRRNHPMAIIRPSFANRGASYSHYGIQIRSVRPDQTSQTNVLHYL 253

Query: 712  NDGNVTFRFSWRKNEFLVPVVMILKALIETNDREIFDGIVGNDTENSFLTDRLELLLRTY 891
            NDG VTFRFSWRKNE+LVPVVMILKAL  T+DREIFDGI+GND ++SFLTDRLELLLR +
Sbjct: 254  NDGQVTFRFSWRKNEYLVPVVMILKALCHTSDREIFDGIIGNDVKDSFLTDRLELLLRGF 313

Query: 892  KTY--NLYSQQETLAYLGDKFRVVFGASPDMSDIEVGKEVLKRIVLVHLPNNA--DKFRM 1059
            K    +L ++ + L YLGDKFRVVF ASPD SD+EVG+EVL RIVLVHL  +   DKFRM
Sbjct: 314  KKRYPHLQNRTQVLQYLGDKFRVVFQASPDQSDLEVGQEVLDRIVLVHLGKDGSQDKFRM 373

Query: 1060 LLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDIN 1239
            LLFMIRKLYSLVAG+C+PDNPDATQHQEVLLGGFLYGMI+KEKI+EYLQNI  Q++ DIN
Sbjct: 374  LLFMIRKLYSLVAGECSPDNPDATQHQEVLLGGFLYGMILKEKIDEYLQNIIAQVRMDIN 433

Query: 1240 RGVGINFDDRKYMTRVFLRINENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINF 1419
            RG+ INF D++YM+RV +R+NENIG K+QYFLSTGNLVSQSGLDLQQVSGYTVVAEKINF
Sbjct: 434  RGMAINFKDKRYMSRVLMRVNENIGSKMQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINF 493

Query: 1420 YRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIAT 1599
            YRFISHFRMVHRGSFFA+LKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNH +HKC+I+T
Sbjct: 494  YRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHFAHKCRIST 553

Query: 1600 EASDVSQVPKALTQLGVLPAD-SFAAGPNLCCVQLDGKIVGWTTHEQGRIVADTLRYWKV 1776
            + SDVS++P  L  LGV PA  +FAAGP+LCCVQ+DGKI+GW +HEQG+I+ADTLRYWKV
Sbjct: 554  QQSDVSRIPSILYSLGVAPASHTFAAGPSLCCVQIDGKIIGWVSHEQGKIIADTLRYWKV 613

Query: 1777 NGGH-GLPLDLEIGYVPPSNKGQYPGLYIFGGHSRMMRPVKYLPLDKEDIVGPFEQVYMN 1953
             G   GLP+DLEIGYVPPS +GQYPGLY+FGGHSRM+RPV+YLPLDKEDIVGPFEQVYMN
Sbjct: 614  EGKTPGLPIDLEIGYVPPSTRGQYPGLYLFGGHSRMLRPVRYLPLDKEDIVGPFEQVYMN 673

Query: 1954 VAVTPEEIENNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTAL 2133
            +AVTP+EI+NN+H+HVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPG AL
Sbjct: 674  IAVTPQEIQNNVHTHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGVAL 733

Query: 2134 VHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSA 2313
             HRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNG NA+VAVISYTGYDMDDAMIINKSA
Sbjct: 734  CHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGFNAVVAVISYTGYDMDDAMIINKSA 793

Query: 2314 DERGFGYGTVYKTEKVDLSQSRRRGDPITQHFGFGSDEWPEAWKEKLDADGLPLIGVKVE 2493
            DERGFGYGT+YKTEKVDL+ +R RGDPITQHFGFG+DEWP+ W EKLD DGLP IG  VE
Sbjct: 794  DERGFGYGTMYKTEKVDLALNRNRGDPITQHFGFGNDEWPKEWLEKLDEDGLPYIGTYVE 853

Query: 2494 EGDPIVAYYDDTLGKTKVKTYHSSEPAYIEEVKLLGDDSNE-QEGQQITIKYRITRQPLI 2670
            EGDPI AY+DDTL KTK+KTYHSSEPAYIEEV L+GD+SN+ QE Q ++IKYRI R P I
Sbjct: 854  EGDPICAYFDDTLNKTKIKTYHSSEPAYIEEVNLIGDESNKFQELQTVSIKYRIRRTPQI 913

Query: 2671 GDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVIINPHAFPSRMTIGMFVESLAGKAGA 2850
            GDKFSSRHGQKGVCSRKWP IDMPF+E+G+QPD+IINPHAFPSRMTIGMFVESLAGKAGA
Sbjct: 914  GDKFSSRHGQKGVCSRKWPTIDMPFSETGIQPDIIINPHAFPSRMTIGMFVESLAGKAGA 973

Query: 2851 LHGIAQDSTPWKFNEQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYY 3030
            LHGIAQDSTPW FNE DTPADYFGEQL KAGYNYHGNEPMYSGATGEELR DIY+G VYY
Sbjct: 974  LHGIAQDSTPWIFNEDDTPADYFGEQLAKAGYNYHGNEPMYSGATGEELRADIYVGVVYY 1033

Query: 3031 QRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLL 3210
            QRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKR GGIRVGEMERDALIGHGTSFLLQDRLL
Sbjct: 1034 QRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRHGGIRVGEMERDALIGHGTSFLLQDRLL 1093

Query: 3211 NCSDYTQTPVCRSCGSILTTQTSVPRIGSMASIRCRRCAVGL-----------DKYEGYA 3357
            N SDYTQ  VCR CGSILTTQ SVPRIGS++++ CRRC++             D  + + 
Sbjct: 1094 NSSDYTQASVCRECGSILTTQQSVPRIGSISTVCCRRCSMRFEDAKKLLTKSEDGEKIFI 1153

Query: 3358 ADSDIWEDGHGKKFVGGDDTTTVAIPFVLKYLDSELSAMGIKMRYNVEPK 3507
             DS IWEDG G KFVGG++TTTVAIPFVLKYLDSELSAMGI++RYNVEPK
Sbjct: 1154 DDSQIWEDGQGNKFVGGNETTTVAIPFVLKYLDSELSAMGIRLRYNVEPK 1203


>Q9P7X8|RPA2|RPA2_SCHPO (SP: Schizosaccharomyces pombe (Fission
            yeast)) Probable DNA-directed RNA polymerase I
            polypeptide 2 (EC 2.7.7.6) (RNA polymerase I subunit 2).
          Length = 1227

 Score = 1606 bits (4159), Expect = 0.0
 Identities = 775/1178 (65%), Positives = 950/1178 (80%), Gaps = 19/1178 (1%)
 Frame = +1

Query: 25   FRTLEREKRFQNPPKDMDSYPLLKDAVAPHVGSFNALMDGPDGGLLNLAVKDIGSKTIFD 204
            F+TLERE+ F+NPPKD  S+P L+ AV PHV SFNAL +    GLLN AVK+IG K  FD
Sbjct: 56   FQTLERERTFKNPPKDGTSFPDLQKAVKPHVDSFNALTNA---GLLNYAVKEIGEKCAFD 112

Query: 205  --TPETSGRL--GNKLKIRVDSVQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLML 372
              T E  G L  GNK+  RVD VQ+AKP + + ++ S+NRK +P+E RER+ TY+SRL+L
Sbjct: 113  SITQEEGGALKFGNKISFRVDEVQIAKPMLSSRERSSINRKVYPAEARERLTTYKSRLVL 172

Query: 373  NVTWSVNDEEEVLEVREAGQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIE 552
              +WSVN      E+RE G IPIM++SNRCHLE LSP +L+  KEES+E+GGYFIVNGIE
Sbjct: 173  KFSWSVNGGPRQSEMREVGMIPIMVRSNRCHLEGLSPAELIAHKEESEEMGGYFIVNGIE 232

Query: 553  KLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTF 732
            KLIRMLI+ +RNHP AIIRPSF NRG SY+++G+ IR VRPDQ+S TN LHYLN+G   F
Sbjct: 233  KLIRMLILPKRNHPTAIIRPSFANRGTSYSQYGLSIRCVRPDQSSLTNTLHYLNNGVTMF 292

Query: 733  RFSWRKNEFLVPVVMILKALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYS 912
            RF WRKNE+L+P +MILKAL+ET+D+EIF+GIVG D  N+FLTDR+EL+LR YK+Y LYS
Sbjct: 293  RFHWRKNEYLIPSMMILKALLETSDKEIFEGIVGKDLGNTFLTDRVELMLRAYKSYGLYS 352

Query: 913  QQETLAYLGDKFRVVFGASPDMSDIEVGKEVLKRIVLVHLPNNADKFRMLLFMIRKLYSL 1092
            Q ETL YLG KFRVV G + D++D+EVG+ +L+++VLVHL    DKFR+LLFMIRKLY+L
Sbjct: 353  QTETLQYLGSKFRVVLGVAEDLTDVEVGRFLLQKVVLVHLREAKDKFRLLLFMIRKLYAL 412

Query: 1093 VAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRGV-GINFDDR 1269
            VAG+C  DNPD+ QHQE+LLGGFLYG I+KEKIE++L +I+ QI  D+ R   G++F DR
Sbjct: 413  VAGECCADNPDSPQHQEILLGGFLYGQILKEKIEDWLNSIRAQINLDVRRSAPGVDFSDR 472

Query: 1270 KYMTRVFLRINENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMV 1449
            KY+TRVF +IN +IG KLQYFLSTGNLVS +GLDLQQ +GYTVVAEK+NFYRF+SHFRMV
Sbjct: 473  KYLTRVFSKINNDIGTKLQYFLSTGNLVSNTGLDLQQATGYTVVAEKLNFYRFLSHFRMV 532

Query: 1450 HRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEASDVSQVPK 1629
            HRG+FFAELKTTTVRKLLPE+WGF+CPVHTPDGSPCGLLNHL+ KC+I T  SDVSQ+P 
Sbjct: 533  HRGAFFAELKTTTVRKLLPEAWGFMCPVHTPDGSPCGLLNHLARKCEIVTHPSDVSQIPS 592

Query: 1630 ALTQLGVLPADSFAAGPNLCCVQLDGKIVGWTTHEQGRIVADTLRYWKV-------NG-- 1782
             L  LGV P           CVQLDGKIVGW T++  + VAD LR  K+       NG  
Sbjct: 593  LLLSLGVDPPSVVGHESGWGCVQLDGKIVGWCTYKLAKHVADVLRLMKIEYAVKLRNGTA 652

Query: 1783 --GHGLPLDLEIGYVPPSNKGQYPGLYIFGGHSRMMRPVKYLPLDKEDIVGPFEQVYMNV 1956
                 +PLDLEIGYVPPS+ GQYPGLY+F   +RM+RPVK++   + D++GPFEQVYM++
Sbjct: 653  TEPAKVPLDLEIGYVPPSHNGQYPGLYLFSNPARMVRPVKHISTGELDMLGPFEQVYMDI 712

Query: 1957 AVTPEEIENNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALV 2136
            A  P+EI   + +HVE++PTN+LSI+AN+TPFSDFNQSPRNMYQCQMGKQTMGTPGTAL 
Sbjct: 713  ACFPKEIVPKVSTHVEYSPTNVLSIVANMTPFSDFNQSPRNMYQCQMGKQTMGTPGTALR 772

Query: 2137 HRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSAD 2316
            +R+DNKLYRLQTGQTP+V+  L++ YG+D++PNG NA+VAVISYTGYDM+DAMI+NKSA 
Sbjct: 773  YRTDNKLYRLQTGQTPVVRPKLHNTYGLDHYPNGTNAVVAVISYTGYDMEDAMILNKSAH 832

Query: 2317 ERGFGYGTVYKTEKVDLSQSRRRGDPITQHFGFGSDEWP-EAWKEKLDADGLPLIGVKVE 2493
            ERGFGYGTVYK E  DLSQ RRRG+P+  HFGF     P   W +KLDADGLP IG+K+E
Sbjct: 833  ERGFGYGTVYKGESFDLSQKRRRGEPVVHHFGFAPGSTPRREWLQKLDADGLPFIGIKLE 892

Query: 2494 EGDPIVAYYDDTLGKTKVKTYHSSEPAYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIG 2673
            +GDPIVAYYD++ G+  ++TYH +EP +++EV+LLG+D  + E QQI +K RITR P+IG
Sbjct: 893  DGDPIVAYYDESTGQNFIETYHGTEPGFVDEVRLLGNDVGDSECQQIHVKLRITRSPIIG 952

Query: 2674 DKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVIINPHAFPSRMTIGMFVESLAGKAGAL 2853
            DKFSSRHGQKG+CS+KWP +DMPFTESGMQPD+IINPHAFPSRMTIGMF+ESLAGKAGA 
Sbjct: 953  DKFSSRHGQKGICSQKWPTVDMPFTESGMQPDIIINPHAFPSRMTIGMFIESLAGKAGAC 1012

Query: 2854 HGIAQDSTPWKFNEQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQ 3033
            HG+AQDSTP+ ++EQ T ADYFGEQL+KAGYNYHGNEPMYSG TG+E++ DIYIG VYYQ
Sbjct: 1013 HGLAQDSTPFIYSEQQTAADYFGEQLVKAGYNYHGNEPMYSGITGQEMKADIYIGVVYYQ 1072

Query: 3034 RLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLN 3213
            RLRHMV+DKFQVR+TGP+++LT QPVKGRKR+GGIR GEMERDA+IGHGTSFL+QDRL+N
Sbjct: 1073 RLRHMVSDKFQVRTTGPIHNLTRQPVKGRKRAGGIRFGEMERDAVIGHGTSFLMQDRLMN 1132

Query: 3214 CSDYTQTPVCRSCGSILTTQTSVPR--IGSMASIRCRRCAVGLDKYEGYAADSDIWEDGH 3387
            CSDY Q+ VCR CGSI++  +++    +GS + +RCR CA       G    SDIW+DG 
Sbjct: 1133 CSDYAQSWVCRDCGSIISIMSTISMNGVGSASEVRCRSCA---KPALGLEDTSDIWQDGS 1189

Query: 3388 GKKFVGGDDTTTVAIPFVLKYLDSELSAMGIKMRYNVE 3501
            GKKFVGG +TT +A+P V  YL +EL+AM IKM   V+
Sbjct: 1190 GKKFVGGTNTTLIALPSVFNYLTAELTAMNIKMMLEVK 1227


>O74633|ACR-2|RPA2_NEUCR (SP: Neurospora crassa) DNA-directed RNA
            polymerase I polypeptide 2 (EC 2.7.7.6) (RNA polymerase I
            subunit 2).
          Length = 1234

 Score = 1497 bits (3876), Expect = 0.0
 Identities = 761/1200 (63%), Positives = 924/1200 (77%), Gaps = 38/1200 (3%)
 Frame = +1

Query: 22   KFRTLEREKRFQNPPKDMDSYPLLKDAVAPHVGSFNALM-DGPDGGLLNLAVKDIGSKTI 198
            +F  + REK F++PP D  +YP L+ AV PH+ SFNAL  D     LL+ A+ +IG+KT 
Sbjct: 16   EFNQVRREKLFRDPPTDRTAYPALQAAVDPHIESFNALFRDDGKPSLLDHALAEIGTKTF 75

Query: 199  FDTPETSGRLG-NKLKIRVDSVQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLN 375
             D  E +   G NKL IR  S++L K  VP  ++ + NR+ FP+ECRER V+YR +L   
Sbjct: 76   LDGDERADPQGKNKLTIRYKSIELQKSQVPPTNRWAKNREIFPAECRERHVSYRGKLSAT 135

Query: 376  VTWSVNDEEEVLEVREAGQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEK 555
              + +ND E    VRE GQ+PIM+KSN+CHL+  SP QLV  KEES+ELGGYFIVNGIEK
Sbjct: 136  FEYRINDGEPHEFVRELGQMPIMVKSNKCHLQNNSPAQLVARKEESEELGGYFIVNGIEK 195

Query: 556  LIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFR 735
            LIRML+V RRN P+AI+RPSF NRGASYT +GI +RSVRPD+TSQTNVLHYL+DGNVTFR
Sbjct: 196  LIRMLLVNRRNFPLAIVRPSFQNRGASYTPYGIIMRSVRPDETSQTNVLHYLSDGNVTFR 255

Query: 736  FSWRKNEFLVPVVMILKALIETNDREIFDGIVGNDTENSF----LTDRLELLLRTYKTYN 903
            FSWRKNE+L+PV+MI+KAL+ETNDREIF+G+VG     +     LTDR+ELLLRTYK Y 
Sbjct: 256  FSWRKNEYLIPVMMIMKALVETNDREIFEGLVGPPQSKASPTPSLTDRVELLLRTYKKYG 315

Query: 904  LYSQQETLAYLGDKFRVVFGASPDMSDIEVGKEVLKRIVLVHLPN-------NADKFRML 1062
            LYS+ +T AYLG KFRVV G    MSD EVG E L++IVLVHL +       +ADKF ML
Sbjct: 316  LYSKTQTRAYLGQKFRVVLGVPDTMSDYEVGTEFLRKIVLVHLGSQDVTEQQDADKFNML 375

Query: 1063 LFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQ-NIKLQIQSDIN 1239
            LFM RKLY+LVAGDCA DNPDA Q+QE+LLGGFLYG IIKE++EE L  + +  ++  + 
Sbjct: 376  LFMCRKLYALVAGDCAVDNPDAVQNQEILLGGFLYGQIIKERLEELLTVSFRASLRDYLR 435

Query: 1240 RGVGINFDDRKYMT----RVFLRINENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAE 1407
            R   ++F    ++      +F R NENIGQ L+YFLSTGNLVS SGLDLQQVSG+TVVAE
Sbjct: 436  RNPTVSFQSDTFLKDFPIAIFRRANENIGQSLEYFLSTGNLVSPSGLDLQQVSGFTVVAE 495

Query: 1408 KINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKC 1587
            K+NF RFISHFRMVHRGSFFA+LKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHL+HKC
Sbjct: 496  KLNFLRFISHFRMVHRGSFFAQLKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLAHKC 555

Query: 1588 KIATEASDVSQVPKALTQLGVLPADSFAAGPNLCCVQLDGKIVGWTTHEQGRIVADTLRY 1767
            KI TE+ D S + +   +LGV+   S A   ++  V LDG+IVGW T E+ + +A+TLRY
Sbjct: 556  KIMTESVDASTISRLAFELGVVNISSAATSESVV-VMLDGRIVGWCTPEECKSIAETLRY 614

Query: 1768 WKVNGGHGLPLDLEIGYVPPSNKGQYPGLYIFGGHSRMMRPVKYLPLDKEDIVGPFEQVY 1947
            WKVNG +G+PL LEIGYVPPSN G YPGLY+    +RM+RPVKYLPL KED VGP EQ Y
Sbjct: 615  WKVNGENGVPLQLEIGYVPPSNGGSYPGLYMSSQPARMVRPVKYLPLQKEDFVGPQEQPY 674

Query: 1948 MNVAVTPEEIENNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGT 2127
            M++A T +E+     +HVEF PTNILSILAN+TPFSDFNQSPRNMYQCQMGKQTMGTP T
Sbjct: 675  MSIACTEQEVIPGDSTHVEFDPTNILSILANMTPFSDFNQSPRNMYQCQMGKQTMGTPAT 734

Query: 2128 ALVHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINK 2307
            AL HR+DNK+YRLQTGQTP+V+A L++ YG DNFPNGMNA+VAVISYTGYDMDDAMI+NK
Sbjct: 735  ALAHRTDNKMYRLQTGQTPVVRAPLHNTYGFDNFPNGMNAVVAVISYTGYDMDDAMILNK 794

Query: 2308 SADERGFGYGTVYKTEKVDLSQSRRR--GDPITQHFGFGSDEW-PEAWKEKLDADGLPLI 2478
            SA ERGFG+G++YKT+KV L    R      I + FGF  +    E+ ++ LD DGLP +
Sbjct: 795  SAHERGFGHGSIYKTKKVSLKDDSRTRSAKSIVKMFGFAPNSTIRESTRDMLDNDGLPRV 854

Query: 2479 GVKVEEGDPIVAY------YDDTL----GKTKVKTYHSSEPAYIEEVKLLGDDSNEQEGQ 2628
            G  + EGD I A+      Y+  L    G T  + Y  SE A++EEV+++G D+  +  Q
Sbjct: 855  GRLLREGDVICAWHTVSADYNGQLVNRDGVTHYERYKDSEDAFVEEVRVIGADNGTEPLQ 914

Query: 2629 QITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVIINPHAFPSRMT 2808
             ++IK RI R P+IGDKFSSRHGQKGV S+KWP  DMPF+E+G+QPDVIINPHAFPSRMT
Sbjct: 915  TVSIKLRIPRSPVIGDKFSSRHGQKGVLSQKWPATDMPFSETGIQPDVIINPHAFPSRMT 974

Query: 2809 IGMFVESLAGKAGALHGIAQDSTPWKFNEQDTPADYFGEQLLKAGYNYHGNEPMYSGATG 2988
            IGMFVESLAGKAGALHG+AQDSTP+KF+EQ+T  DYFG QL+KAGYNYHGNEP+YSG TG
Sbjct: 975  IGMFVESLAGKAGALHGLAQDSTPFKFDEQNTAGDYFGHQLMKAGYNYHGNEPLYSGITG 1034

Query: 2989 EELRCDIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDAL 3168
            EE + DIYIG VYYQRLRHMVNDK+QVR+TGPV   T QP+KGRK+ GGIRVGEMERDAL
Sbjct: 1035 EEFQADIYIGVVYYQRLRHMVNDKYQVRTTGPVVPTTGQPIKGRKKGGGIRVGEMERDAL 1094

Query: 3169 IGHGTSFLLQDRLLNCSDYTQTPVCRSCGSILTTQTSV-PRIG---SMASIRCRRCAVGL 3336
            + HGTSFLLQDRLLNCSDY+++ +CR CGS L+TQ +V P IG   +++++RCR CAV L
Sbjct: 1095 LAHGTSFLLQDRLLNCSDYSKSWMCRQCGSFLSTQPTVSPFIGKRKAVSTVRCRNCAVRL 1154

Query: 3337 DKYEG---YAADSDIWEDGHGKKFVGGDDTTTVAIPFVLKYLDSELSAMGIKMRYNVEPK 3507
            D  E       D +IWEDG G +++GG++TT VA+P  LKYLD EL+AMGIK++Y V+ K
Sbjct: 1155 DDMEDVDLMQIDGEIWEDGSGTQWIGGENTTIVAVPGALKYLDVELAAMGIKLKYKVDKK 1214


>P70700|POLR1B|RPA2_MOUSE (SP: Mus musculus (Mouse)) DNA-directed RNA
            polymerase I 135 kDa polypeptide (EC 2.7.7.6) (RNA
            polymerase I subunit 2) (RPA135).
          Length = 1135

 Score =  975 bits (2521), Expect = 0.0
 Identities = 522/1154 (45%), Positives = 736/1154 (63%), Gaps = 8/1154 (0%)
 Frame = +1

Query: 61   PPKDMDSYPLLKDAVAPHVGSFN-ALMDGPDGGLLNLAVKDIGSKTIFDTPETSGRLGNK 237
            PP+   +   L+D    HV SFN A ++G     L+ AV+ I        P        +
Sbjct: 27   PPEQQKA--ALQDLTRAHVDSFNYAALEG-----LSHAVQAI-------PPFEFAFKDER 72

Query: 238  LKIRVDSVQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDEEEVLEV 417
            + + +    ++ PSVP    +  +   +P+ECR R  TYR RL  +++W+VN   + +  
Sbjct: 73   ISLTIVDAVISPPSVPKGT-ICKDLNVYPAECRGRKSTYRGRLTADISWAVNGVPKGIIK 131

Query: 418  REAGQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQRRNHPM 597
            +  G +PIM+KS  C+L  L P  L+E  EE++E+GGYFI+NGIEK+IRMLI  RRN P+
Sbjct: 132  QFLGYVPIMVKSKLCNLYNLPPRVLIEHHEEAEEMGGYFIINGIEKVIRMLIEPRRNFPV 191

Query: 598  AIIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFLVPVVM 777
            A++RP + +RG  YT+FG+ +R VR + ++    LHY+ +G V   F +RK  F +P+  
Sbjct: 192  AMVRPKWKSRGLGYTQFGVSMRCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGF 251

Query: 778  ILKALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKFRVV 957
             LKAL+  +D +IF  ++    E+SF  + +  +LR       +SQ++ L YLG+ FRV 
Sbjct: 252  ALKALVSFSDYQIFQELIKGKEEDSFFRNSVSQMLRIVIEEGCHSQKQVLNYLGECFRVK 311

Query: 958  FGASPDMSDIEVGKEVLKRIVLVHLPNNADKFRMLLFMIRKLYSLVAGDCAPDNPDATQH 1137
                    ++E  + +L + + +HL +N DKF +   M RKL++L  G+C  DNPD+  +
Sbjct: 312  LSLPDWYPNVEAAEFLLNQGICIHLQSNTDKFYLRCLMTRKLFALARGECMDDNPDSLVN 371

Query: 1138 QEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRG-VGINFDDRKYMTRVFLRINENIG 1314
            QEVL  G L+ M +KEK+E +L +IK+ +     +  V IN ++   + ++F  +   + 
Sbjct: 372  QEVLSPGQLFLMFLKEKMENWLVSIKIVLDKRAQKANVSINNEN---LMKIF-SMGTELT 427

Query: 1315 QKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVR 1494
            +  +Y L+TGNL S++GL   + SG  VVA+K+NF R++SHFR VHRG+ FA+++TTTVR
Sbjct: 428  RPFEYLLATGNLRSKTGLGFLEDSGLCVVADKLNFLRYLSHFRCVHRGAAFAKMRTTTVR 487

Query: 1495 KLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEASDVSQVPKALTQLGVLPADSFAA 1674
            +LLPESWGFLCPVHTPDG+PCGLLNHL+  C++ T+  D + +P  L  LGV  AD+   
Sbjct: 488  RLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFGDTASIPALLCGLGVTGADTAPC 547

Query: 1675 GPNLCC--VQLDGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPSNKGQ-Y 1845
             P   C  V LDG +VGW   +    VADTLR +KV     +P  +E+  +P + K   Y
Sbjct: 548  RPYSDCYPVLLDGVMVGWVDKDLAPEVADTLRRFKVLREKRIPPWMEVALIPMTGKPSLY 607

Query: 1846 PGLYIFGGHSRMMRPVKYLPLDKEDIVGPFEQVYMNVAVTPEEIENNIHSHVEFTPTNIL 2025
            PGL++F    R++RPV+ L L +E+++G  EQ++MNVA+  +E+   I +H E  P ++L
Sbjct: 608  PGLFLFTTPCRLVRPVQNLELGREELIGTMEQLFMNVAIFEDEVFGGISTHQELFPHSLL 667

Query: 2026 SILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKANLY 2205
            S++AN  PFSD NQSPRNMYQCQMGKQTMG P     +RSDNKLYRLQT Q+P+V+  +Y
Sbjct: 668  SVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQNRSDNKLYRLQTPQSPLVRPCMY 727

Query: 2206 DDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQSRRR 2385
            D Y MDN+P G NAIVAVISYTGYDM+DAMI+NK++ ERGF +G+VYK+E +DLS+  ++
Sbjct: 728  DFYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKFKQ 787

Query: 2386 GDPITQHFGFGSDEWPEAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTYHSS 2565
            G+    +  FG         +KLD DGLP IG K+E GDP  +Y +   G+  V  Y S 
Sbjct: 788  GE---DNLVFGVKPGDPRVMQKLDDDGLPSIGAKLEYGDPYYSYLNLNTGEGFVVYYKSK 844

Query: 2566 EPAYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPF 2745
            E   ++ +K+  +D    + + I I  RI R P IGDKF+SRHGQKG+ SR WP  DMPF
Sbjct: 845  ENCVVDNIKVCSNDMGSGKFKCICITVRIPRNPTIGDKFASRHGQKGILSRLWPAEDMPF 904

Query: 2746 TESGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFNEQDTPADYFGE 2925
            TESGM PD++ NPH FPSRMTIGM +ES+AGK+ ALHG+  D+TP+ F+E+++  +YFGE
Sbjct: 905  TESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGE 964

Query: 2926 QLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTMQ 3105
             L  AGYN++G E +YSG +G EL  DI+IG VYYQRLRHMV+DKFQVR+TG  + +T Q
Sbjct: 965  MLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKVTNQ 1024

Query: 3106 PVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPVCRSCGSILTTQTSVP 3285
            P+ GR   GGIR GEMERDAL+ HGTSFLL DRL NCSD +   VC  CGS+L+     P
Sbjct: 1025 PLGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVECGSLLSPLLEKP 1084

Query: 3286 RIGSMASIRCRR--CAVGLDKYEGYAADSDIWEDGHGKKFVGGDDT-TTVAIPFVLKYLD 3456
               S +++R R+  C V                        G  DT  TV++P+V +Y  
Sbjct: 1085 P-PSWSAMRNRKYNCTV-----------------------CGRSDTIDTVSVPYVFRYFV 1120

Query: 3457 SELSAMGIKMRYNV 3498
            +EL+AM IK++ +V
Sbjct: 1121 AELAAMNIKVKLDV 1134


>Q9H9Y6|POLR1B|RPA2_HUMAN (SP: Homo sapiens (Human)) DNA-directed RNA
            polymerase I 135 kDa polypeptide (EC 2.7.7.6) (RNA
            polymerase I subunit 2) (RPA135).
          Length = 1079

 Score =  935 bits (2416), Expect = 0.0
 Identities = 486/1047 (46%), Positives = 681/1047 (65%), Gaps = 5/1047 (0%)
 Frame = +1

Query: 373  NVTWSVNDEEEVLEVREAGQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIE 552
            ++ W+VN   + +  +  G +PIM+KS  C+L  L P  L+E  EE++E+GGYFI+NGIE
Sbjct: 61   DINWAVNGISKGIIKQFLGYVPIMVKSKLCNLRNLPPQALIEHHEEAEEMGGYFIINGIE 120

Query: 553  KLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTF 732
            K+IRMLI+ RRN P+A+IRP +  RG  YT++G+ +  VR + ++    LHYL +G V  
Sbjct: 121  KVIRMLIMPRRNFPIAMIRPKWKTRGPGYTQYGVSMHCVREEHSAVNMNLHYLENGTVML 180

Query: 733  RFSWRKNEFLVPVVMILKALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYS 912
             F +RK  F  P+   LKAL+  +D +IF  ++    ++SFL + +  +LR        +
Sbjct: 181  NFIYRKELFFRPLGFALKALVSFSDYQIFQELIKGKEDDSFLRNSVSQMLRIVMEEGCLT 240

Query: 913  QQETLAYLGDKFRVVFGASPDMSDIEVGKEVL-KRIVLVHLPNNADKFRMLLFMIRKLYS 1089
            Q++ L YLG+ FRV     PD    E   E L  + + +HL +N +KF ML  M RKL++
Sbjct: 241  QKQVLNYLGECFRVKLNV-PDWYPNEQAAEFLFNQCICIHLKSNTEKFYMLCLMTRKLFA 299

Query: 1090 LVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINR-GVGINFDD 1266
            L  G+C  DNPD+  +QEVL  G L+ M +KEK+E +L +IK+       +  V +N D+
Sbjct: 300  LAKGECMEDNPDSLVNQEVLTPGQLFLMFLKEKLEGWLVSIKIAFDKKAQKTSVSMNTDN 359

Query: 1267 RKYMTRVFLRINENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRM 1446
               + R+F  +  ++ +  +Y  +TGNL S++GL L Q SG  VVA+K+NF R++SHFR 
Sbjct: 360  ---LMRIFT-MGIDLTKPFEYLFATGNLRSKTGLGLLQDSGLCVVADKLNFIRYLSHFRC 415

Query: 1447 VHRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEASDVSQVP 1626
            VHRG+ FA+++TTTVR+LLPESWGFLCPVHTPDG PCGL+NHL+  C++ T+    + +P
Sbjct: 416  VHRGADFAKMRTTTVRRLLPESWGFLCPVHTPDGEPCGLMNHLTAVCEVVTQFVYTASIP 475

Query: 1627 KALTQLGVLPADSFAAGPNLCC--VQLDGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPL 1800
              L  LGV P D         C  V LDG +VGW   +    +AD+LR++KV     +P 
Sbjct: 476  ALLCNLGVTPIDGAPHRSYSECYPVLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPP 535

Query: 1801 DLEIGYVPPSNKGQ-YPGLYIFGGHSRMMRPVKYLPLDKEDIVGPFEQVYMNVAVTPEEI 1977
             +E+  +P + K   YPGL++F    R++RPV+ L L KE+++G  EQ++MNVA+  +E+
Sbjct: 536  WMEVVLIPMTGKPSLYPGLFLFTTPCRLVRPVQNLALGKEELIGTMEQIFMNVAIFEDEV 595

Query: 1978 ENNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKL 2157
               + +H E  P ++LS++AN  PFSD NQSPRNMYQCQMGKQTMG P      RSDNKL
Sbjct: 596  FAGVTTHQELFPHSLLSVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKL 655

Query: 2158 YRLQTGQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYG 2337
            YRLQT Q+P+V+ ++YD Y MDN+P G NAIVAVISYTGYDM+DAMI+NK++ ERGF +G
Sbjct: 656  YRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHG 715

Query: 2338 TVYKTEKVDLSQSRRRGDPITQHFGFGSDEWPEAWKEKLDADGLPLIGVKVEEGDPIVAY 2517
            +VYK+E +DLS+  ++GD       FG         +KLD DGLP IG K++ GDP  +Y
Sbjct: 716  SVYKSEFIDLSEKIKQGD---SSLVFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSY 772

Query: 2518 YDDTLGKTKVKTYHSSEPAYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHG 2697
             +   G++ V  Y S E   ++ +K+  +D+   + + + I  R+ R P IGDKF+SRHG
Sbjct: 773  LNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVRITMRVPRNPTIGDKFASRHG 832

Query: 2698 QKGVCSRKWPQIDMPFTESGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDST 2877
            +KG+ SR WP  DMPFTESGM PD++ NPH FPSRMTIGM +ES+AGK+ ALHG+  D+T
Sbjct: 833  RKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDAT 892

Query: 2878 PWKFNEQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVND 3057
            P+ F+E+++  +YFGE L  AGYN++G E +YSG +G EL  DI+IG VYYQRLRHMV+D
Sbjct: 893  PFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSD 952

Query: 3058 KFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTP 3237
            KFQVR+TG  + +T QP+ GR   GGIR GEMERDAL+ HGTSFLL DRL NCSD +   
Sbjct: 953  KFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAH 1012

Query: 3238 VCRSCGSILTTQTSVPRIGSMASIRCRRCAVGLDKYEGYAADSDIWEDGHGKKFVGGDDT 3417
            VC  CGS+L+     P   S +++R R+    L                        D  
Sbjct: 1013 VCVKCGSLLSPLLEKPP-PSWSAMRNRKYNCTLCS--------------------RSDTI 1051

Query: 3418 TTVAIPFVLKYLDSELSAMGIKMRYNV 3498
             TV++P+V +Y  +EL+AM IK++ +V
Sbjct: 1052 DTVSVPYVFRYFVAELAAMNIKVKLDV 1078


>O54888|POLR1B|RPA2_RAT (SP: Rattus norvegicus (Rat)) DNA-directed RNA
            polymerase I 135 kDa polypeptide (EC 2.7.7.6) (RNA
            polymerase I subunit 2) (RPA135) (RNA polymerase I 127
            kDa subunit).
          Length = 1135

 Score =  900 bits (2326), Expect = 0.0
 Identities = 505/1172 (43%), Positives = 701/1172 (59%), Gaps = 26/1172 (2%)
 Frame = +1

Query: 61   PPKDMDSYPLLKDAVAPHVGSFN-ALMDGPDGGLLNLAVKDIGSKTIFDTPETSGRLGNK 237
            PP+   +   L+D    HV SFN A+++G     L+ AV+ I        P        +
Sbjct: 27   PPEQQKA--ALQDLTRAHVDSFNYAVLEG-----LSHAVQAI-------PPFEFAFKDER 72

Query: 238  LKIRVDSVQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDEEEVLEV 417
            + + +    ++ P+VP    +      +P+ECR R  TYR +L  +++W+VN   + +  
Sbjct: 73   ISLTIVDAAISPPAVPKGT-ICKELNIYPAECRGRRSTYRGKLTADISWAVNGVPKGIIK 131

Query: 418  REAGQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQRRNHPM 597
            +  G +PIM+KS  C+L  L P  L+E  EE++E+GGYFI+NGIEK+IRMLI+ RRN P+
Sbjct: 132  QFLGXVPIMVKSKLCNLYNLPPQVLIEHHEEAEEMGGYFIINGIEKVIRMLIMPRRNFPI 191

Query: 598  AIIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFLVPVVM 777
            A+IRP + +RG  YT+FG+ I  VR + ++    LHY+ +G V   F +RK  F +P+  
Sbjct: 192  AMIRPKWKSRGLGYTQFGVSIHCVREEHSAVNMNLHYVENGTVMLNFIYRKELFFLPLGF 251

Query: 778  ILKALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKFRVV 957
             LKAL+  +D +IF  ++    E+SF  + +  +LR       ++Q++ L YLG++FRV 
Sbjct: 252  ALKALVSFSDYQIFQELIKGKEEDSFFKNSVSQMLRIVMEEGCHTQKQVLDYLGERFRVK 311

Query: 958  FGASPDMSDIEVGKEVLKRIVLVHLPNNADKFRMLLFMIRKLYSLVAGDCAPDNPDATQH 1137
                    + E  + +  + + +HL +N DKF +L  M RKL++L  G+C  DNPD+  +
Sbjct: 312  LSLPDWYPNAEAAEFLFNQCICIHLKSNTDKFYLLCLMTRKLFALARGECMEDNPDSLVN 371

Query: 1138 QEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINR-GVGINFDDRKYMTRVFLRINENIG 1314
            QEVL  G L+ M +KEK+E +L +IK+ +     +  V IN ++   + ++F  +   + 
Sbjct: 372  QEVLTPGQLFLMFLKEKMENWLLSIKIALDKRAQKTNVSINNEN---LMKIF-SMGTELT 427

Query: 1315 QKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVR 1494
            +  +Y L+TGNL S++GL   Q SG  VVA+K+NF R++SHFR VHRG+ FA+++TTTVR
Sbjct: 428  RPFEYLLATGNLRSKTGLGFMQDSGLCVVADKLNFIRYLSHFRCVHRGADFAKMRTTTVR 487

Query: 1495 KLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEASDVSQVPKALTQLGVLPADSFAA 1674
            KLLPESWGFLCPVHTPDG+PCGLLNHL+  C++ T+    + +P  L  LGV P D+   
Sbjct: 488  KLLPESWGFLCPVHTPDGAPCGLLNHLTAVCEVVTKFVYTASIPALLCGLGVTPVDAAPC 547

Query: 1675 GPNLCC--VQLDGKIVGWTTHEQGRIVADTLRYWKV-NGGHGLPLDLEIGYVPPSNKGQY 1845
             P   C  V LDG +VGW   E    VADTLR +KV        LD   G  P S     
Sbjct: 548  RPYSDCYPVLLDGVMVGWVDKELAPEVADTLRRFKVLRERRCSSLD---GGGPDS----- 599

Query: 1846 PGLYIFGGHSRMMRPV-KYLPLDKEDIVGPF--------EQVYMNVAVTPEEIENNIHSH 1998
                    H R  +PV + +PL      G           +   N      E     H H
Sbjct: 600  --------HDRKAKPVPRAVPLHHSLQAGEACAEPGAGQRRARWNYGAALHE-----HCH 646

Query: 1999 VE------------FTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHR 2142
            +               P+    ++AN  PFSD NQSPRNMYQCQMGKQTMG P      R
Sbjct: 647  LRGRGFWWSFHTPGALPSQPAEVIANFIPFSDHNQSPRNMYQCQMGKQTMGFPLLTYQDR 706

Query: 2143 SDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADER 2322
            SDNKLYRLQT Q+P+V+  +YD Y MDN+P G NAIVAVISYTGYDM+DAMI+NK++ ER
Sbjct: 707  SDNKLYRLQTPQSPLVRPCMYDHYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNKASWER 766

Query: 2323 GFGYGTVYKTEKVDLSQSRRRGDPITQHFGFGSDEWPEAWKEKLDADGLPLIGVKVEEGD 2502
            GF +G+VYK+E +DLS+  ++GD       FG         +KLD DGLP IG K+E GD
Sbjct: 767  GFAHGSVYKSEFIDLSEKFKQGD---DSLVFGVKPGDPRVMQKLDNDGLPFIGAKLEFGD 823

Query: 2503 PIVAYYDDTLGKTKVKTYHSSEPAYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIGDKF 2682
            P   Y +   G+  V  Y S E   ++ +K+  +D+   + + + +  R+ R P IGDKF
Sbjct: 824  PYYGYLNLNTGEGFVVYYKSKENCVVDNIKVCSNDTGSGKFKCVCVTVRVPRNPTIGDKF 883

Query: 2683 SSRHGQKGVCSRKWPQIDMPFTESGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGI 2862
            +SRHGQKG+ SR WP  DMPFTESGM PD++ NPH FPSRMTIGM +ES+AGK+ ALHG+
Sbjct: 884  ASRHGQKGILSRLWPAEDMPFTESGMMPDILFNPHGFPSRMTIGMLIESMAGKSAALHGL 943

Query: 2863 AQDSTPWKFNEQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLR 3042
              D+TP+ F+E+++  +YFGE L  AGYN++G E +YSG +G EL  DI+IG VYYQRLR
Sbjct: 944  CHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGMELEADIFIGVVYYQRLR 1003

Query: 3043 HMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSD 3222
            HMV+DKFQVR+TG  + +T QP+ GR   GGIR GEMERDAL+ HGTSFLL DRL NCSD
Sbjct: 1004 HMVSDKFQVRTTGARDKVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRLFNCSD 1063

Query: 3223 YTQTPVCRSCGSILTTQTSVPRIGSMASIRCRRCAVGLDKYEGYAADSDIWEDGHGKKFV 3402
             +   VC  CGS+L+     P   S +++R R       KY                   
Sbjct: 1064 RSVAHVCVKCGSLLSPLLEKPP-PSWSAMRNR-------KYNCTVCGR------------ 1103

Query: 3403 GGDDTTTVAIPFVLKYLDSELSAMGIKMRYNV 3498
              D   TV++P+V +Y  +EL+AM IK++ +V
Sbjct: 1104 -SDSIDTVSVPYVFRYFVAELAAMNIKVKLDV 1134


>Q9VPP3|RPI135|Q9VPP3 (TrEMBL: Drosophila melanogaster (Fruit fly))
            RPI135 protein (EC 2.7.7.6) (SD02110p) (DNA-directed RNA
            polymerase beta chain).
          Length = 1129

 Score =  877 bits (2267), Expect = 0.0
 Identities = 477/1160 (41%), Positives = 701/1160 (60%), Gaps = 11/1160 (0%)
 Frame = +1

Query: 52   FQNPPKDMDSYPLLKDAVAPHVGSFNALMDGPDGGLLNLAVKDIGSKTIFDTPETSGRLG 231
            F+  PK +  +  L +   PHV SF+ ++     GL N A   I +  +          G
Sbjct: 21   FKQIPKKLSRH--LANLGGPHVDSFDEMLTV---GLDNSAKHMIPNHWLSPA-------G 68

Query: 232  NKLKIRVDSVQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDEEEVL 411
             K+ ++V+S+ +AKP VP +      R+ +P++ R+  V+Y     + + WSVN  ++  
Sbjct: 69   EKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTP 128

Query: 412  EVREAGQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQRRNH 591
               + G++PIML+S  C+L + +P ++V+  E   E GG F++ G EK++RMLI+ RRNH
Sbjct: 129  INMDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNH 188

Query: 592  PMAIIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFLVPV 771
            P+ + R S+ +RG +++  G+ +++VR D++S +NV+HYLN+G   F FS  K    VPV
Sbjct: 189  PICVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLSYVPV 248

Query: 772  VMILKALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKFR 951
             +ILK L++  D EI++ +V     + +    ++ +LR  +  N+Y+  +  +++G+ FR
Sbjct: 249  CLILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLREVQNENVYTHAQCKSFIGNLFR 308

Query: 952  VVFGASPDMS-DIEVGKEVLKRIVLVHLPNNADKFRMLLFMIRKLYSLVAGDCAPDNPDA 1128
              F   P+   D +V   +L+  V++HL    DKF++++FMI+KL+    G    +N D+
Sbjct: 309  ARFPEVPEWQPDDDVTDFILRERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDS 368

Query: 1129 TQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRGVGINFDDRKYMTRVFLRINEN 1308
               QEVLL G LY   + E++E ++  ++  +Q  +     +       MT+  +R    
Sbjct: 369  AMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTS--AVMTQC-MRQAGG 425

Query: 1309 IGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTT 1488
            +G+ ++ FL+TGN+ S++GL L Q SG  ++AE IN  R++SHFR +HRGS+F  ++TT 
Sbjct: 426  VGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTE 485

Query: 1489 VRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEASD--VSQVPKALTQLGVLPAD 1662
             R+LLP++WGF+CPVHTPDG+PCGLLNHL+  C+I+       V  +PK L  +G++P  
Sbjct: 486  ARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMMPLS 545

Query: 1663 SFA-AGPNLCCVQLDGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPSNKG 1839
            +    G  L  V LDGK +G     +   + D LRY K+ G   LP  +EIG++P    G
Sbjct: 546  NRRYLGEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGT--LPQMMEIGFIPFKKNG 603

Query: 1840 QYPGLYIFGGHSRMMRPVKYLPLDKEDIVGPFEQVYMNVAVTPEEIENNIHSHVEFTPTN 2019
            Q+PGLYI  G +RMMRPV  L   + + +G  EQ+YM +A+  +E+  +  +H+E   T+
Sbjct: 604  QFPGLYIATGPARMMRPVWNLKWKRVEYIGTLEQLYMEIAIDAKEMYPDFTTHLELAKTH 663

Query: 2020 ILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKAN 2199
             +S LANL P  D+NQSPRNMYQCQMGKQTMGTP      ++ NKLYRLQT  TP+ +  
Sbjct: 664  FMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPV 723

Query: 2200 LYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQSR 2379
             YD+  +D+F  G NAIVAVISYTGYDM+DAMIINK+A ERGF YG++YKT+ + L    
Sbjct: 724  HYDNIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTLD--- 780

Query: 2380 RRGDPITQHFGFGSDEWPEAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTYH 2559
            ++     +H        PE  K  LD DGLP  G K+  G P+  Y+D  +   KV    
Sbjct: 781  KKSSYFARH-----PHMPELIKH-LDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMD 834

Query: 2560 SSEPAYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDM 2739
              E   +E ++ LG      + + + I  R+ R   IGDKF+SR GQKG+CS+K+P  D+
Sbjct: 835  EKEDCIVESIRQLGSFDLSPK-KMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDL 893

Query: 2740 PFTESGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFNEQDTPADYF 2919
            PFTESG+ PD++ NPH FPSRMTI M +E++AGK  A+HG   D+TP++F+E++T  DYF
Sbjct: 894  PFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFSEENTAIDYF 953

Query: 2920 GEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLT 3099
            G+ L   GYNY+G E +YSG  G E+  DI+ G V+YQRLRHMV DK+QVRSTG V + T
Sbjct: 954  GKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEART 1013

Query: 3100 MQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPVCRSCGSILTTQTS 3279
             QP+KGRKR GG+R GEMERDALI HG +FLLQDRL + SD T T VC  CGSIL     
Sbjct: 1014 HQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSILAPLQR 1073

Query: 3280 VPR---IGSMAS--IRCRRCAVGLDKYEGYAADSDIWEDGHGKKFVGGDDTTT--VAIPF 3438
            + +    G ++S    CR C                           GD+++   + IPF
Sbjct: 1074 IVKRNETGGLSSQPDTCRLC---------------------------GDNSSVSMIEIPF 1106

Query: 3439 VLKYLDSELSAMGIKMRYNV 3498
              KYL +ELS++ I  R+ +
Sbjct: 1107 SFKYLVTELSSVNINARFKL 1126


>Q27493|F14B4.3|Q27493 (TrEMBL: Caenorhabditis elegans) F14B4.3
            protein (EC 2.7.7.6) (DNA-directed RNA polymerase beta
            chain).
          Length = 1127

 Score =  876 bits (2264), Expect = 0.0
 Identities = 470/1106 (42%), Positives = 676/1106 (61%), Gaps = 15/1106 (1%)
 Frame = +1

Query: 229  GNKLKIRVDSVQLAKPSVPANDKLSLNR-KTFPSECRERMVTYRSRLMLNVTWSVNDEE- 402
            G+ + ++  S QL KP++    KL+ +     P+ECR+R +TY   L + +   VN    
Sbjct: 38   GDAVTMKFTSAQLHKPTLDTGAKLTSDTLPLLPAECRQRGLTYAGNLKVGIDVHVNGSRL 97

Query: 403  EVLEVREAGQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQR 582
            +++E+   G++PIML+S  CHL  +S  +LV A EE  E GGYFIVNG EK+IR+LI  R
Sbjct: 98   DIIEII-LGKVPIMLRSEGCHLRGMSRKELVVAGEEPIEKGGYFIVNGSEKVIRLLIANR 156

Query: 583  RNHPMAIIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFL 762
            RN P+AIIR +F  +G  +++FG+ +RSV+ + T+    LHYL+ G +     +R+  F 
Sbjct: 157  RNFPIAIIRKTFKEKGKLFSEFGVMMRSVKENHTAVMMTLHYLDTGTMQLALQFRREIFY 216

Query: 763  VPVVMILKALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYSQQETLAYLGD 942
            VP++ I+KAL + ND  I  G      ++ F +  +  +L   +   + +Q+  +  +G 
Sbjct: 217  VPLMYIVKALTDKNDAVISAGFKRGRNQDQFYSSCILNMLAQCQEEEILNQEAAIRAIGS 276

Query: 943  KFRVVFG--ASPDMSDIEVGKEVLKRIVLVHLPNNADKFRMLLFMIRKLYSLVAGDCAPD 1116
            +FRV      +P   D+E G+ +++  VL+HL ++ +KF  L +M +KL +LV G+CAP+
Sbjct: 277  RFRVAVSDRVAPWEDDLEAGRFIIRECVLIHLDSDEEKFHTLAYMTQKLIALVKGECAPE 336

Query: 1117 NPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRGVGINFDDRKYMTRVFLR 1296
             PD  Q QE  + G +  +I++E++E  +  ++ +++   +R   I       +  +   
Sbjct: 337  TPDNPQFQEASVSGHILLLILRERMENIIGMVRRKLEYMSSRKDFI-LTSAAILKALGNH 395

Query: 1297 INENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAEL 1476
                I + + YFL+TGNLV++ GL LQQ SG++V+AE+IN  RF+SHFR +HRG+FF E+
Sbjct: 396  TGGEITRGMAYFLATGNLVTRVGLALQQESGFSVIAERINQLRFVSHFRAIHRGAFFMEM 455

Query: 1477 KTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEASDVSQVPKALTQLGVLP 1656
            +TT VRKL PE+WGF+CPVHTPDG+PCGLLNH++  C+I T+ SD S VP  L +LG+  
Sbjct: 456  RTTDVRKLRPEAWGFICPVHTPDGAPCGLLNHVTASCRIVTDLSDNSNVPSLLAELGMYT 515

Query: 1657 ADSFAAGP---NLCCVQLDGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPP 1827
              + A  P    L  V ++G+ +G+    +   +   LR  KV     +P   EI  V  
Sbjct: 516  HKTVALAPPGEELYPVLMNGRFLGYVPITKAASIERYLRCAKVAKDARIPYTSEIALVRR 575

Query: 1828 SN-----KGQYPGLYIFGGHSRMMRPVKYLPLDKEDIVGPFEQVYMNVAVTPEEIENNIH 1992
            S      + QYPG+YI     R++RPV+ L +D  + +G FEQVY++V + PEE E  + 
Sbjct: 576  STDIKNIQTQYPGIYILSDAGRLIRPVRNLAMDAVEHIGTFEQVYLSVVLDPEEAEPGVT 635

Query: 1993 SHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQT 2172
             H E  P+ + S   NL PF D NQSPRN+YQCQMGKQTMGT   A   R+DNK+YRLQ 
Sbjct: 636  MHQELHPSCLFSFAGNLIPFPDHNQSPRNVYQCQMGKQTMGTAVHAWHSRADNKMYRLQF 695

Query: 2173 GQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKT 2352
             Q P++K   Y+ Y MD +P G NA VAVISYTGYDM+DAM INK++ +RGF +GTV K 
Sbjct: 696  PQQPMLKLEAYEKYEMDEYPLGTNACVAVISYTGYDMEDAMTINKASYQRGFAHGTVIKV 755

Query: 2353 EKVDLSQSRRRGDPITQHFGFGSDEWPEAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTL 2532
            E+++L   R R     ++        P    + +  DGLP+ G +    +     ++   
Sbjct: 756  ERINLVTERERKTIFYRN--------PREEIKTVGPDGLPIPGRRYFLDEVYYVTFNMET 807

Query: 2533 GKTKVKTYHSSEPAYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVC 2712
            G  +   +H +EPAY   V+++     +   +   I++RI R P+IGDKF+SRHGQKG+ 
Sbjct: 808  GDFRTHKFHYAEPAYCGLVRIVEQGEGDSGAKHALIQWRIERNPIIGDKFASRHGQKGIN 867

Query: 2713 SRKWPQIDMPFTESGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFN 2892
            S  WP   +PF+E+GM PD+I NPH FPSRMTIGM +ES+AGKA A HG   D++P+ FN
Sbjct: 868  SFLWPVESLPFSETGMVPDIIFNPHGFPSRMTIGMMIESMAGKAAATHGENYDASPFVFN 927

Query: 2893 EQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVR 3072
            E +T  ++FGE L KAGYNY+GNE  YSG  G ++   I+ G VYYQRLRHM+ DKFQVR
Sbjct: 928  EDNTAINHFGELLTKAGYNYYGNETFYSGVDGRQMEMQIFFGIVYYQRLRHMIADKFQVR 987

Query: 3073 STGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPVCRSC 3252
            +TGP++ +T QPVKGRK+ GGIR GEMERDA+I HGTSF+LQDRLLNCSD      CR C
Sbjct: 988  ATGPIDPITHQPVKGRKKGGGIRFGEMERDAIIAHGTSFVLQDRLLNCSDRDVAYACRRC 1047

Query: 3253 GSILTTQTSVPRIGSMASIRCRRCAVGLDKYEGY---AADSDIWEDGHGKKFVGGDDTTT 3423
            GS+L+   S  R GS    + R+    LD  E       D D             D    
Sbjct: 1048 GSLLSVLMS-SRAGSHLLKKKRKDDEPLDYTETQRCRTCDKD-------------DQVFL 1093

Query: 3424 VAIPFVLKYLDSELSAMGIKMRYNVE 3501
            + +P V +YL +EL+AM +K++  +E
Sbjct: 1094 LQVPRVFRYLTAELAAMNVKIKLGIE 1119


>P20028|RPI135|RPA2_DROME (SP: Drosophila melanogaster (Fruit fly))
            DNA-directed RNA polymerase I 135 kDa polypeptide (EC
            2.7.7.6) (RNA polymerase I subunit 2).
          Length = 1129

 Score =  875 bits (2260), Expect = 0.0
 Identities = 476/1160 (41%), Positives = 701/1160 (60%), Gaps = 11/1160 (0%)
 Frame = +1

Query: 52   FQNPPKDMDSYPLLKDAVAPHVGSFNALMDGPDGGLLNLAVKDIGSKTIFDTPETSGRLG 231
            F+  PK +  +  L +   PHV SF+ ++     GL N A   I +  +          G
Sbjct: 21   FKQIPKKLSRH--LANLGGPHVDSFDEMLTV---GLDNSAKHMIPNHWLSPA-------G 68

Query: 232  NKLKIRVDSVQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDEEEVL 411
             K+ ++V+S+ +AKP VP +      R+ +P++ R+  V+Y     + + WSVN  ++  
Sbjct: 69   EKISMKVESIWIAKPKVPQDVIDVRTREIYPTDSRQLHVSYSGMCSVRLGWSVNGVQKTP 128

Query: 412  EVREAGQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQRRNH 591
               + G++PIML+S  C+L + +P ++V+  E   E GG F++ G EK++RMLI+ RRNH
Sbjct: 129  INMDLGEVPIMLRSKACNLGQATPEEMVKHGEHDSEWGGIFVIRGNEKIVRMLIMTRRNH 188

Query: 592  PMAIIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFLVPV 771
            P+ + R S+ +RG +++  G+ +++VR D++S +NV+HYLN+G   F FS  K    VPV
Sbjct: 189  PICVKRSSWKDRGQNFSDLGMLVQTVREDESSLSNVVHYLNNGTAKFMFSHVKRLSYVPV 248

Query: 772  VMILKALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKFR 951
             +ILK L++  D EI++ +V     + +    ++ +LR  +  N+Y+  +  +++G+ FR
Sbjct: 249  CLILKCLMDYTDEEIYNRLVQGYESDQYYVSCVQAMLREVQNENVYTHAQCKSFIGNLFR 308

Query: 952  VVFGASPDMS-DIEVGKEVLKRIVLVHLPNNADKFRMLLFMIRKLYSLVAGDCAPDNPDA 1128
              F   P+   D +V   +L+  V++HL    DKF++++FMI+KL+    G    +N D+
Sbjct: 309  ARFPEVPEWQPDDDVTDFILRERVMIHLDTYEDKFQLIVFMIQKLFQCAQGKYKVENVDS 368

Query: 1129 TQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRGVGINFDDRKYMTRVFLRINEN 1308
            +  QEVLL G LY   + E++E ++  ++  +Q  +     +       MT+  +R    
Sbjct: 369  SMMQEVLLPGHLYQKYLSERVESWVSQVRRCLQKKLTSPDALVTS--AVMTQC-MRQAGG 425

Query: 1309 IGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTT 1488
            +G+ ++ FL+TGN+ S++GL L Q SG  ++AE IN  R++SHFR +HRGS+F  ++TT 
Sbjct: 426  VGRAIESFLATGNIASRTGLGLMQNSGLVIMAENINRMRYMSHFRAIHRGSYFTTMRTTE 485

Query: 1489 VRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEASD--VSQVPKALTQLGVLPAD 1662
             R+LLP++WGF+CPVHTPDG+PCGLLNHL+  C+I+       V  +PK L  +G++P  
Sbjct: 486  ARQLLPDAWGFICPVHTPDGTPCGLLNHLTLTCEISMRPDPKLVKAIPKHLIDMGMMPLS 545

Query: 1663 SFA-AGPNLCCVQLDGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPSNKG 1839
            +    G  L  V LDGK +G     +   + D LRY K+ G   LP  +EIG++P    G
Sbjct: 546  NRRYLGEKLYVVFLDGKHLGHIHQSEAEKIVDELRYGKIFGT--LPQMMEIGFIPFKKNG 603

Query: 1840 QYPGLYIFGGHSRMMRPVKYLPLDKEDIVGPFEQVYMNVAVTPEEIENNIHSHVEFTPTN 2019
            Q+PGLYI  G +R+MRPV  L   + + +G  EQ+YM +A+  +E+  +  +H+E   T+
Sbjct: 604  QFPGLYIATGPARLMRPVWNLKWKRVEYIGTLEQLYMEIAIDAKEMYPDFTTHLELAKTH 663

Query: 2020 ILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKAN 2199
             +S LANL P  D+NQSPRNMYQCQMGKQTMGTP      ++ NKLYRLQT  TP+ +  
Sbjct: 664  FMSNLANLIPMPDYNQSPRNMYQCQMGKQTMGTPCLNWPKQAANKLYRLQTPGTPLFRPV 723

Query: 2200 LYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQSR 2379
             YD   +D+F  G NAIVAVISYTGYDM+DAMIINK+A ERGF YG++YKT+ + L    
Sbjct: 724  HYDIIQLDDFAMGTNAIVAVISYTGYDMEDAMIINKAAYERGFAYGSIYKTKFLTLD--- 780

Query: 2380 RRGDPITQHFGFGSDEWPEAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTYH 2559
            ++     +H        PE  K  LD DGLP  G K+  G P+  Y+D  +   KV    
Sbjct: 781  KKSSYFARH-----PHMPELIKH-LDTDGLPHPGSKLSYGSPLYCYFDGEVATYKVVKMD 834

Query: 2560 SSEPAYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDM 2739
              E   +E ++ LG   +    + + I  R+ R   IGDKF+SR GQKG+CS+K+P  D+
Sbjct: 835  EKEDCIVESIRQLGS-FDLSPTKMVAITLRVPRPATIGDKFASRAGQKGICSQKYPAEDL 893

Query: 2740 PFTESGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFNEQDTPADYF 2919
            PFTESG+ PD++ NPH FPSRMTI M +E++AGK  A+HG   D+TP++F+E++T  DYF
Sbjct: 894  PFTESGLIPDIVFNPHGFPSRMTIAMMIETMAGKGAAIHGNVYDATPFRFSEENTAIDYF 953

Query: 2920 GEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLT 3099
            G+ L   GYNY+G E +YSG  G E+  DI+ G V+YQRLRHMV DK+QVRSTG V + T
Sbjct: 954  GKMLEAGGYNYYGTERLYSGVDGREMTADIFFGVVHYQRLRHMVFDKWQVRSTGAVEART 1013

Query: 3100 MQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPVCRSCGSILTTQTS 3279
             QP+KGRKR GG+R GEMERDALI HG +FLLQDRL + SD T T VC  CGSIL     
Sbjct: 1014 HQPIKGRKRGGGVRFGEMERDALISHGAAFLLQDRLFHNSDKTHTLVCHKCGSILAPLQR 1073

Query: 3280 VPR---IGSMAS--IRCRRCAVGLDKYEGYAADSDIWEDGHGKKFVGGDDTTT--VAIPF 3438
            + +    G ++S    CR C                           GD+++   + IPF
Sbjct: 1074 IVKRNETGGLSSQPDTCRLC---------------------------GDNSSVSMIEIPF 1106

Query: 3439 VLKYLDSELSAMGIKMRYNV 3498
              KYL +ELS++ I  R+ +
Sbjct: 1107 SFKYLVTELSSVNINARFKL 1126


>P28365|RPA2|RPA2_EUPOC (SP: Euplotes octocarinatus) DNA-directed RNA
            polymerase I second largest subunit (EC 2.7.7.6) (RNA
            polymerase I subunit 2).
          Length = 1166

 Score =  860 bits (2221), Expect = 0.0
 Identities = 499/1179 (42%), Positives = 712/1179 (60%), Gaps = 42/1179 (3%)
 Frame = +1

Query: 88   LLKDAVAPHVGSFNALMDGPDGGLLNLAVKDIGSKTIFD--TPETSGRLG-NKLKIRVDS 258
            + K+    H+ SF+  M       LN A + +     FD   PE S   G  KL +  DS
Sbjct: 15   IYKNIARHHIDSFDFAMST----CLNRACEHM---LPFDYIVPEESASCGFKKLTLWYDS 67

Query: 259  VQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDEEEVLEVREAGQIP 438
             +L +PS+   D  S     +PSECR+R +TY   L   +    +DE       + G IP
Sbjct: 68   FELGQPSLGEIDYDS--HILYPSECRQRKMTYTIPLFATIFKKFDDEMVDNFKVKLGDIP 125

Query: 439  IMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSF 618
             M +   C+L+ L+  +L +  E+  E GGYFIVNG EK+IRMLIV +RN P+A  R  F
Sbjct: 126  TMGRKKFCNLKGLTKKELAKRGEDMLEFGGYFIVNGNEKVIRMLIVPKRNFPIAFKRSKF 185

Query: 619  GNRGASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFLVPVVMILKALIE 798
              RG  +T +G+Q+R VR D T+QT  L YL+DG+V+ R  ++K EFL+P+++ILKAL  
Sbjct: 186  LERGKDFTDYGVQMRCVRDDFTAQTITLTYLSDGSVSLRLIYQKQEFLIPIILILKALKN 245

Query: 799  TNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKFRVVF-GASPD 975
              DR+I++ IV  +     ++DR+E +L   K  N+Y   ++ A +G +FR+V  G + +
Sbjct: 246  CTDRQIYERIVKGNFNQRQISDRVEAILAVGKDLNIYDSDQSKALIGSRFRIVLAGITSE 305

Query: 976  MSDIEVGKEVLKRIVLVHLPNNADKFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLG 1155
             SDI+ G   L + + +H  +   KF  L+ MI KLY+ VA +   DN D+   Q+VLLG
Sbjct: 306  TSDIDAGDLFLSKHICIHTDSYEAKFDTLILMIDKLYASVANEVELDNLDSVAMQDVLLG 365

Query: 1156 GFLYGMIIKEKIEEYLQ-NIKLQIQSDINRGVGINFDDRKYMTRVF-LRINENIG---QK 1320
            G LY  I+ EK+ + L  N++ ++  ++ R    NFD  K+   +   +IN  IG   ++
Sbjct: 366  GHLYLQILSEKLFDCLHINLRARLNKELKRH---NFDPMKFRDVLTNQKINCGIGLIGKR 422

Query: 1321 LQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKL 1500
            ++ FL+TGNL+S++ LDL Q SG+ ++ +K+N  RF+SHFR +HRG +FAE KTT+VRKL
Sbjct: 423  MENFLATGNLISRTNLDLMQTSGFCIIGDKLNNIRFLSHFRSIHRGQYFAEQKTTSVRKL 482

Query: 1501 LPESWGFLCPVHTPDGSPCGLLNHLSHKC-KIATEASDVSQVPKALTQLGVLPADSFAAG 1677
            LPESWGF+CPVHTPDG+PCGLLNH+S  C  I +E   +  + K    LG L  +S ++ 
Sbjct: 483  LPESWGFICPVHTPDGAPCGLLNHISMSCVPIGSEEKQID-IDKFRNILGELGMNSISS- 540

Query: 1678 PNLCC--------VQLDGKIVGWTTHEQGRIVADTLRYWKVNGG---HGLPLDLEIGYVP 1824
             +LC         V  DG  +G+   + G    + LRY K       + +P  LEI ++P
Sbjct: 541  -DLCLNYHTGYYPVIFDGIHLGYVEKDIGESFVEGLRYLKCTQSQPDYAIPRTLEIAFIP 599

Query: 1825 PSNKG---QYPGLYIFGGHSRMMRPVKYLPLDKEDIVGPFEQVYMNVAVTPEEIENNIHS 1995
             S      Q+PG+++    +R  RPVK L  +  + + P EQ+ +++A T E+I     +
Sbjct: 600  FSGYSRNLQWPGIFLASTPARFTRPVKNLHYNCIEWISPLEQMNLSIACTDEDITPET-T 658

Query: 1996 HVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTG 2175
            H E  P NILSI+A++  F+++NQSPRNMYQCQM KQTMGTP      R+DNK+YRL   
Sbjct: 659  HQELDPINILSIVASVGVFAEYNQSPRNMYQCQMAKQTMGTPYHNHQFRTDNKIYRLLFP 718

Query: 2176 QTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTE 2355
              PIVK     D+ ++ +P+G NA+VAVISYTGYD++DAMIINKS+ ERGFG+G VYK+ 
Sbjct: 719  HRPIVKTRTQVDFDIEEYPSGTNAVVAVISYTGYDLEDAMIINKSSYERGFGHGVVYKSY 778

Query: 2356 KVDLSQSRR---RGDPITQHFGF----GSDEWPEAWKEKLDADGLPLIGVKVEEGDPIVA 2514
              DL++S     RG   +  + F       +  +   E +D DGLP IG ++ +G P + 
Sbjct: 779  THDLNESNSQSTRGIKSSVRYKFLNNVSQKDKSKIKLENIDPDGLPKIGSQLTKGKPELC 838

Query: 2515 YYDDTLGKTKVKTYHSSEPAYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRH 2694
             +D      K+  +  SE A IE V++ G+D    +   I    R +R P+IGDKFSSRH
Sbjct: 839  IFDTLKRGAKLSKFKDSEKARIETVRVCGNDDKNPDNLSIGYTIRYSRIPVIGDKFSSRH 898

Query: 2695 GQKGVCSRKWPQIDMPFTESGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDS 2874
            GQKGV S  WPQ+DMPFTE+G+ PD+IINPHAFPSRMT+GM ++S+A K+G+L G  +  
Sbjct: 899  GQKGVLSVLWPQVDMPFTENGITPDLIINPHAFPSRMTMGMLIQSMAAKSGSLRGEFKTV 958

Query: 2875 TPWKFNEQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVN 3054
              ++  + +    +FG++LL  G+NYHGNE MYSG  G  L+ DI+IG VYYQRLRHMV+
Sbjct: 959  ETFQRYDDNDIVGHFGKELLDKGFNYHGNELMYSGIFGTPLKADIFIGVVYYQRLRHMVS 1018

Query: 3055 DKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQT 3234
            DK Q R TGP++ LT QPVKGRK+ GGIR GEMERD+L+ HG ++ L DRL   SDY++ 
Sbjct: 1019 DKSQARGTGPIDILTHQPVKGRKKGGGIRFGEMERDSLLAHGAAYCLNDRLFRSSDYSEG 1078

Query: 3235 PVCRSCGSILT---------TQTSVPRIGSMASIRCRRCAVGLDKYEGYAADSDIW--ED 3381
             VC++CGSIL+         TQT +P                LD+      D +I   E 
Sbjct: 1079 FVCQNCGSILSCYVNRAIMKTQTFIP--------------PSLDESNKDTEDKEIHMNEK 1124

Query: 3382 GHGKKFVGGDDTTTVAIPFVLKYLDSELSAMGIKMRYNV 3498
               K      +   VA+PFVL++L +EL++MGIK+++ V
Sbjct: 1125 VICKVCKKNSNCKKVALPFVLRFLANELASMGIKLKFTV 1163


>Q9FXG4|F1N18.2|Q9FXG4 (TrEMBL: Arabidopsis thaliana (Mouse-ear
            cress)) F1N18.2 protein (EC 2.7.7.6) (DNA-directed RNA
            polymerase beta chain).
          Length = 1233

 Score =  832 bits (2148), Expect = 0.0
 Identities = 471/1128 (41%), Positives = 679/1128 (60%), Gaps = 73/1128 (6%)
 Frame = +1

Query: 322  PSECRERMVTYRSRLMLNVTWSVNDEEEVLEVREAGQIPIMLKSNRCHLEKLSPNQLVEA 501
            P ECR+  ++Y    M +V +  ND   V +  + GQ PIML S  C L+     +L++ 
Sbjct: 119  PFECRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPIMLMSKLCSLKGADCRKLLKC 178

Query: 502  KEESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRSVRPDQ 681
            KE + E+GGYFI+NGIE++ R +I  +RNHP ++IR SF +R   Y+   +  R VR DQ
Sbjct: 179  KESTSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYSSKAVVTRCVRDDQ 238

Query: 682  TSQTNVLHYLNDGNVTFRFSWRKNEFLVPVVMILKALIETNDREIF-------------- 819
            +S T  L+YL +G+    F     E+L+PV ++LKAL  + D EI+              
Sbjct: 239  SSVTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIYESLNCCYSEHYGRG 298

Query: 820  DGIVGNDTENSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKFRVVFGASPDMSDIEVGK 999
            DG +G       + +R +++L   +   L+++++   +LG  F+ V       S   V +
Sbjct: 299  DGAIGTQ----LVRERAKIILDEVRDLGLFTREQCRKHLGQHFQPVLDGVKKESLSIVAE 354

Query: 1000 EVLKRIVLVHLPNNADKFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMII 1179
             VL+  + VHL N+ DKF +L+F+I+KLYSLV     PDNPD+ Q+QE+L+ G +  + +
Sbjct: 355  AVLRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVITIYL 414

Query: 1180 KEKIEEYLQNIKLQIQSDI-NRGVGINFDDRKYMTRVFLRINENIGQKLQYFLSTGNLVS 1356
            KEK+EE+L+  K  ++ ++ N     +F+ RK +  +F      IG  ++  L TG L +
Sbjct: 415  KEKLEEWLRKCKSLLKDELDNTNSKFSFESRKSLLILF----SLIGTSIETLLKTGALKT 470

Query: 1357 QSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVH 1536
            QSGLDLQQ +GYTV AE++NF RF+S FR VHRG+ FA L+TTTVRKLLPESWGFLCPVH
Sbjct: 471  QSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLPESWGFLCPVH 530

Query: 1537 TPDGSPCGLLNHLSHKCKIATEAS------DVSQVPKA----LTQLGVLPADSF---AAG 1677
            TPDG+PCGLLNH++   +I ++        D  ++ K+    LT  G++P+      A  
Sbjct: 531  TPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVPSLPKLVRAGP 590

Query: 1678 PNLCCVQLDGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPSNKGQYPGLY 1857
            P +  V LDG++VG  +      V   +R  KV     +P DLE+GYVP S  G YPGLY
Sbjct: 591  PKVIHVLLDGQVVGTLSSNLVTKVVSYIRRLKVEAPSVIPEDLEVGYVPTSMGGSYPGLY 650

Query: 1858 IFGGHSRMMRPVKYL--PLDKEDIVGPFEQVYMNV-----------------AVTPEEI- 1977
            +    +R +RPVK +  P D  +++GPFEQV   +                  + P ++ 
Sbjct: 651  LASCPARFIRPVKNISIPSDNIELIGPFEQVANPINIIFISTFPGIQSNEKKKILPNQVF 710

Query: 1978 --------------ENNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMG 2115
                           +++ +H E  PT ++S++ANLTP+SD NQSPRNMYQCQM KQTM 
Sbjct: 711  MEISCPDGGNGGRNNSSLATHEEIHPTGMISVVANLTPWSDHNQSPRNMYQCQMAKQTMA 770

Query: 2116 TPGTALVHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAM 2295
                AL  R+D K+Y LQT Q+P+V+   Y  Y +D  P G NAIVAV+++TG+DM+DAM
Sbjct: 771  YSTQALQFRADQKIYHLQTPQSPVVRTKTYTTYSIDENPTGTNAIVAVLAHTGFDMEDAM 830

Query: 2296 IINKSADERGFGYGTVYKTEKVDLSQSRRRGDPITQHFGFGSDEWPEAWKEKLDADGLPL 2475
            I+NKS+ ERG  +G +Y+TE +DLS    R D  ++ F   ++   +A   ++DADGLP 
Sbjct: 831  ILNKSSVERGMCHGQIYQTENIDLSDQNSRFDSGSKSFRRSTN---KAEHFRIDADGLPS 887

Query: 2476 IGVKVEEGDPIVAYYDDTLGKTKVKTYHSSEPAYIEEVKLLGDDSNEQEGQQITIKYRIT 2655
            +G K+   +P  + YD+   KT+      ++P  ++ V +  D  +++  Q+  I++R  
Sbjct: 888  VGQKLYPDEPYCSIYDEVTNKTRHMKRKGTDPVIVDFVSV--DMKSKKHPQRANIRFRHA 945

Query: 2656 RQPLIGDKFSSRHGQKGVCSRKWPQIDMPFT-ESGMQPDVIINPHAFPSRMTIGMFVESL 2832
            R P+IGDKFSSRHGQKGVCS+ WP IDMPF   +GM+PD+IINPHAFPSRMTI M +ES+
Sbjct: 946  RNPIIGDKFSSRHGQKGVCSQLWPDIDMPFNGVTGMRPDLIINPHAFPSRMTIAMLLESI 1005

Query: 2833 AGKAGALHGIAQDSTPWKFNEQDTP----------ADYFGEQLLKAGYNYHGNEPMYSGA 2982
            A K G+LHG   D+TP++   + T            D  G  L + G+N++G E +YSG 
Sbjct: 1006 AAKGGSLHGKFVDATPFRDAVKKTNGEEESKSSLLVDDLGSMLKEKGFNHYGTETLYSGY 1065

Query: 2983 TGEELRCDIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERD 3162
             G EL+C+I++G VYYQRLRHMV+DKFQVRSTG V+ LT QP+KGRKR GGIR GEMERD
Sbjct: 1066 LGVELKCEIFMGPVYYQRLRHMVSDKFQVRSTGQVDQLTHQPIKGRKRGGGIRFGEMERD 1125

Query: 3163 ALIGHGTSFLLQDRLLNCSDYTQTPVCRSCGSILTTQTSVPRIGSMASIRCRRCAVGLDK 3342
            +L+ HG S+LL DRL   SD+    VC  CGS+LT+        S+ +++ ++    + K
Sbjct: 1126 SLLAHGASYLLHDRLHTSSDHHIADVCSLCGSLLTS--------SVVNVQQKKLIQEIGK 1177

Query: 3343 YEGYAADSDIWEDGHGKKFVGGDDTTTVAIPFVLKYLDSELSAMGIKM 3486
                     +    +  K   G +  TVA+P+V +YL +EL++M IKM
Sbjct: 1178 LPPGRTPKKV--TCYSCKTSKGME--TVAMPYVFRYLAAELASMNIKM 1221


>Q9C8S4|T1P2.15|Q9C8S4 (TrEMBL: Arabidopsis thaliana (Mouse-ear
            cress)) DNA-directed RNA polymerase subunit, putative (EC
            2.7.7.6) (DNA-directed RNA polymerase beta chain).
          Length = 1114

 Score =  829 bits (2141), Expect = 0.0
 Identities = 468/1098 (42%), Positives = 674/1098 (61%), Gaps = 45/1098 (4%)
 Frame = +1

Query: 328  ECRERMVTYRSRLMLNVTWSVNDEEEVLEVREAGQIPIMLKSNRCHLEKLSPNQLVEAKE 507
            +CR+  ++Y    M +V +  ND   V +  + GQ PIML S  C L+     +L++ KE
Sbjct: 39   DCRQAKISYTGTFMADVCFKYNDGVVVRDKFDFGQFPIMLMSKLCSLKGADCRKLLKCKE 98

Query: 508  ESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRSVRPDQTS 687
             + E+GGYFI+NGIE++ R +I  +RNHP ++IR SF +R   Y+   +  R VR DQ+S
Sbjct: 99   STSEMGGYFILNGIERVFRCVIAPKRNHPTSMIRNSFRDRKEGYSSKAVVTRCVRDDQSS 158

Query: 688  QTNVLHYLNDGNVTFRFSWRKNEFLVPVVMILKALIETNDREIF--------------DG 825
             T  L+YL +G+    F     E+L+PV ++LKAL  + D EI+              DG
Sbjct: 159  VTVKLYYLRNGSARVGFWIVGREYLLPVGLVLKALTNSCDEEIYESLNCCYSEHYGRGDG 218

Query: 826  IVGNDTENSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKFRVVFGASPDMSDIEVGKEV 1005
             +G       + +R +++L   +   L+++++   +LG  F+ V           V + V
Sbjct: 219  AIGTQ----LVRERAKIILDEVRDLGLFTREQCRKHLGQHFQPVLDG--------VAEAV 266

Query: 1006 LKRIVLVHLPNNADKFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKE 1185
            L+  + VHL N+ DKF +L+F+I+KLYSLV     PDNPD+ Q+QE+L+ G +  + +KE
Sbjct: 267  LRDYLFVHLDNDHDKFNLLIFIIQKLYSLVDQTSLPDNPDSLQNQEILVPGHVITIYLKE 326

Query: 1186 KIEEYLQNIKLQIQSDI-NRGVGINFDDRKYMTRVFLRINEN----IGQKLQYFLSTGNL 1350
            K+EE+L+  K  ++ ++ N     +F+    + ++   IN+N    IG  ++  L TG L
Sbjct: 327  KLEEWLRKCKSLLKDELDNTNSKFSFESLADVKKL---INKNPPRSIGTSIETLLKTGAL 383

Query: 1351 VSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCP 1530
             +QSGLDLQQ +GYTV AE++NF RF+S FR VHRG+ FA L+TTTVRKLLPESWGFLCP
Sbjct: 384  KTQSGLDLQQRAGYTVQAERLNFLRFLSFFRAVHRGASFAGLRTTTVRKLLPESWGFLCP 443

Query: 1531 VHTPDGSPCGLLNHLSHKCKIATEAS------DVSQVPKA----LTQLGVLPADSF---A 1671
            VHTPDG+PCGLLNH++   +I ++        D  ++ K+    LT  G++P+      A
Sbjct: 444  VHTPDGTPCGLLNHMTRTSRITSQFDSKGNIRDFLKIRKSVVDVLTGAGMVPSLPKLVRA 503

Query: 1672 AGPNLCCVQLDGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPSNKGQYPG 1851
              P +  V LDG++VG  +      V   +R  KV     +P DLE+GYVP S  G YPG
Sbjct: 504  GPPKVIHVLLDGQVVGTLSSNLVTKVVSYIRRLKVEAPSVIPEDLEVGYVPTSMGGSYPG 563

Query: 1852 LYIFGGHSRMMRPVKYL--PLDKEDIVGPFEQVYMNVAVTPEEIENNIHSHVEFTPTNIL 2025
            LY+    +R +RPVK +  P D  +++GPFEQV   + +    I     +H E  PT ++
Sbjct: 564  LYLASCPARFIRPVKNISIPSDNIELIGPFEQVANPINII--FISTFPATHEEIHPTGMI 621

Query: 2026 SILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKANLY 2205
            S++ANLTP+SD NQSPRNMYQCQM KQTM     AL  R+D K+Y LQT Q+P+V+   Y
Sbjct: 622  SVVANLTPWSDHNQSPRNMYQCQMAKQTMAYSTQALQFRADQKIYHLQTPQSPVVRTKTY 681

Query: 2206 DDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQSRRR 2385
              Y +D  P G NAIVAV+++TG+DM+DAMI+NKS+ ERG  +G +Y+TE +DLS    R
Sbjct: 682  TTYSIDENPTGTNAIVAVLAHTGFDMEDAMILNKSSVERGMCHGQIYQTENIDLSDQNSR 741

Query: 2386 GDPITQHFGFGSDEWPEAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTYHSS 2565
             D  ++ F   ++   +A   ++DADGLP +G K+   +P  + YD+   KT+      +
Sbjct: 742  FDSGSKSFRRSTN---KAEHFRIDADGLPSVGQKLYPDEPYCSIYDEVTNKTRHMKRKGT 798

Query: 2566 EPAYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPF 2745
            +P  ++ V +  D  +++  Q+  I++R  R P+IGDKFSSRHGQKGVCS+ WP IDMPF
Sbjct: 799  DPVIVDFVSV--DMKSKKHPQRANIRFRHARNPIIGDKFSSRHGQKGVCSQLWPDIDMPF 856

Query: 2746 T-ESGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFNEQDTP----- 2907
               +GM+PD+IINPHAFPSRMTI M +ES+A K G+LHG   D+TP++   + T      
Sbjct: 857  NGVTGMRPDLIINPHAFPSRMTIAMLLESIAAKGGSLHGKFVDATPFRDAVKKTNGEEES 916

Query: 2908 -----ADYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVR 3072
                  D  G  L + G+N++G E +YSG  G EL+C+I++G VYYQRLRHMV+DKFQVR
Sbjct: 917  KSSLLVDDLGSMLKEKGFNHYGTETLYSGYLGVELKCEIFMGPVYYQRLRHMVSDKFQVR 976

Query: 3073 STGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPVCRSC 3252
            STG V+ LT QP+KGRKR GGIR GEMERD+L+ HG S+LL DRL   SD+    VC  C
Sbjct: 977  STGQVDQLTHQPIKGRKRGGGIRFGEMERDSLLAHGASYLLHDRLHTSSDHHIADVCSLC 1036

Query: 3253 GSILTTQTSVPRIGSMASIRCRRCAVGLDKYEGYAADSDIWEDGHGKKFVGGDDTTTVAI 3432
            GS+LT+        S+ +++ ++    + K         +    +  K   G +  TVA+
Sbjct: 1037 GSLLTS--------SVVNVQQKKLIQEIGKLPPGRTPKKV--TCYSCKTSKGME--TVAM 1084

Query: 3433 PFVLKYLDSELSAMGIKM 3486
            P+V +YL +EL++M IKM
Sbjct: 1085 PYVFRYLAAELASMNIKM 1102


>Q8SSB7|ECU03_0440|Q8SSB7 (TrEMBL: Encephalitozoon cuniculi)
            DNA-directed RNA polymerase I, second largest subunit (EC
            2.7.7.6) (DNA-directed RNA polymerase beta chain).
          Length = 1062

 Score =  736 bits (1900), Expect = 0.0
 Identities = 441/1162 (37%), Positives = 640/1162 (55%), Gaps = 26/1162 (2%)
 Frame = +1

Query: 91   LKDAVAPHVGSFNALMDGPDGGLLNLAVKDIGSKTIFDTPETSGRLGNKLKIRVDSVQLA 270
            LKDA   H+ ++NA+ +G    +L+  V  +        P   G    K KI V+ + +A
Sbjct: 15   LKDAAKAHIEAYNAIFNG---NILDNLVAGV-------PPLVKG----KTKIIVEEIHVA 60

Query: 271  KPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDEEEVLEVREAGQIPIMLK 450
             P +   D +S++R+  P ECRER +TY+ ++++ V+   +++  V E + AG  PIM++
Sbjct: 61   PPFLSDKDHISVDRRLLPRECRERGLTYKGKMVVRVSLFHDNKHVVTEDKSAGHFPIMVR 120

Query: 451  SNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRG 630
            S  CHL  +      E  E+ DE+GGYFI+NGI++ IR  I+Q+RNH  A        + 
Sbjct: 121  STLCHLNGIKNKN--EVGEDEDEIGGYFIINGIDRFIRFNIMQKRNHIFAF---KMRKKT 175

Query: 631  ASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFLVPVVMILKALIETNDR 810
            + ++ + + +R V  D+    N LHY  DGNV  +   +K EFL P+V++LKAL+ T D 
Sbjct: 176  SFFSDYMVSMRCVGRDEIGHMNFLHYCTDGNVVIKIFHKKYEFLFPLVLVLKALVNTTDE 235

Query: 811  EIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKFRVVFGASPDMSDIE 990
            E+F  + G          R   LL+ +  +N++S+ E L Y+G +F  +       S  E
Sbjct: 236  ELFGALGGGQ--------RAVHLLKCFAEHNVFSRTECLDYIGSRFSAILNFE---SKAE 284

Query: 991  VGKEVLKRIVLVHLPNNADKFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYG 1170
            V +E+L + V+ HL +N DKF  L+   RKL+S V  +   D+PD+  + E+     +  
Sbjct: 285  VAEEILSKYVVSHLSSNLDKFNFLILAARKLFSFVDNEITEDDPDSPSNHELGTETQIIS 344

Query: 1171 MIIKEKIEEY--------------LQNIKLQIQSDINRGVGINFD--DRKYMTRVFLRIN 1302
              ++++IEE+              L+  K +++ D     G   D  D   +  +F R +
Sbjct: 345  SFLRDRIEEFMRFFSMMCRKTYYKLEGEKRKLEGDSVTESGFCEDELDISKIREIFKRTS 404

Query: 1303 ENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKT 1482
             NIGQ+++ FLS+G++   S  D+ Q  G+++ AE+INFY+++SHFR V+RG+    +  
Sbjct: 405  INIGQRMELFLSSGSITLTSCSDILQTLGFSITAERINFYKYLSHFRGVNRGTHIPSM-V 463

Query: 1483 TTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEASDVSQVPKALTQLGVLPAD 1662
            T++RKL PESWGFLCPVHTPDG+PCG+L H++ + ++ +   D +     L + GV+P  
Sbjct: 464  TSIRKLRPESWGFLCPVHTPDGAPCGVLLHMAKEAEVVSRDDDFNT--DILFEFGVVP-- 519

Query: 1663 SFAAGPNLCCVQLDGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPSNKGQ 1842
            S         V ++G++VG +T     +      Y   NG     L +E+ Y   S    
Sbjct: 520  SIRGVEMGIPVLVNGRVVG-STSSPSDLTRMVREYRNRNG-----LMIEVVYT--SEPKM 571

Query: 1843 YPGLYIFGGHSRMMRPVKYLPLDKEDIVGPFEQVYMNVAVTPEEIENNIHSHVEFTPTNI 2022
            +P + IF    R  R V    L  E+ +G  EQV++N+       + + +   E   + I
Sbjct: 572  FPSVCIFSSVGRFARKVMNRRLGSEEWIGIMEQVFLNIDTEEGAGDGDYY---EIDKSGI 628

Query: 2023 LSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKANL 2202
            L I+A L P+SD NQSPRNMYQCQM KQ +G P   +  R+D  +Y +   Q+PIV+   
Sbjct: 629  LGIIAGLIPYSDHNQSPRNMYQCQMAKQAIGHPAHNIRTRTDPTMYTVNYLQSPIVRTEG 688

Query: 2203 YDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQSRR 2382
            Y+   + ++P G+N +VAV+SYT YDM+DA++INK++ +RG   G VYKTEKV L +   
Sbjct: 689  YEM--VKDYPVGINCMVAVLSYTAYDMEDALVINKNSIDRGLFTGYVYKTEKVPLDKG-- 744

Query: 2383 RGDPITQHFGFGSDEWPEAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTYHS 2562
                    F +                 LP +G ++++ D +  Y D   G+   K Y  
Sbjct: 745  ------YFFTY-----------------LPSVGQRIQKDDTLYRYVDQD-GREYEKRYLG 780

Query: 2563 SEPAYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMP 2742
            +EP  ++ V++  +D  E+     T   RI R P+IGDKFSSRHGQKGVCS  WP IDMP
Sbjct: 781  TEPGIVDIVRVFENDMGERCA---TFTIRIVRSPMIGDKFSSRHGQKGVCSMHWPGIDMP 837

Query: 2743 FTESGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFN---EQDTPAD 2913
            FTESG  PD+IINPHAFPSRMTIGM +ES+AGK G L G  QD T +K +   EQ+   D
Sbjct: 838  FTESGCVPDIIINPHAFPSRMTIGMLIESIAGKVGCLSGNEQDGTVFKKSFLLEQEEGDD 897

Query: 2914 -------YFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVR 3072
                   Y   +L + G+NY+GNEPMYSG  G E R DI++G VYYQRL+HMV DKFQVR
Sbjct: 898  EKVRRKEYLCSELRRHGFNYYGNEPMYSGVAGNEFRADIFVGVVYYQRLKHMVGDKFQVR 957

Query: 3073 STGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPVCRSC 3252
            + G V S T QPV GRK+ GGIR GEMERDALI HG S+LLQDRLL  SD T    C +C
Sbjct: 958  TKGAVVSTTRQPVGGRKKRGGIRFGEMERDALISHGASYLLQDRLLKSSDSTVFEYCGTC 1017

Query: 3253 GSILTTQTSVPRIGSMASIRCRRCAVGLDKYEGYAADSDIWEDGHGKKFVGGDDTTTVAI 3432
             SIL T                                      +G    G  D   V +
Sbjct: 1018 RSILFT-------------------------------------NNGDCICGSSDLKAVEM 1040

Query: 3433 PFVLKYLDSELSAMGIKMRYNV 3498
            P+V KYL  EL AM IK++ ++
Sbjct: 1041 PYVFKYLCCELLAMNIKVQIDL 1062


>Q8LNU6|OSJNBA0041P03.1|Q8LNU6 (TrEMBL: Oryza sativa (japonica
            cultivar-group)) Putative DNA-directed RNA polymerase I
            subunit, 5'-partial (EC 2.7.7.6) (DNA-directed RNA
            polymerase beta chain) (Fragment).
          Length = 855

 Score =  660 bits (1703), Expect = 0.0
 Identities = 382/883 (43%), Positives = 521/883 (59%), Gaps = 51/883 (5%)
 Frame = +1

Query: 991  VGKEVLKRIVLVHLPNNADKFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYG 1170
            V + VLK  + VHL NN DKF +L+FM++KLY++V    +PD  DA Q+QEVLL G L  
Sbjct: 1    VAEAVLKDYIFVHLQNNHDKFNLLIFMLQKLYAIVDQTASPDKADALQYQEVLLPGHLIT 60

Query: 1171 MIIKEKIEEYLQNIKLQIQSDINRGVGINFDD-RKYM----------------------- 1278
            + +K++++++L+  K  I  +  +    + +D R ++                       
Sbjct: 61   VFLKDRLQDWLRKSKRLIVEEATKNKSFDLNDFRDFILEGQVKGTSRVIETSSGKPCWLM 120

Query: 1279 ------TRVFL-RINENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISH 1437
                   R FL + +  +G+ +Q  +  G + SQSGLDL Q  G T+ AE++NF+R+ISH
Sbjct: 121  RIGAQEVRKFLSKTSAYVGKAIQSMIKVGKVNSQSGLDLPQRDGMTIHAERLNFHRYISH 180

Query: 1438 FRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIAT------ 1599
            FR VHRGS FA+++TT+VRKLLPESWGFLCPVHTPDG PCGLLNH++  C+I++      
Sbjct: 181  FRSVHRGSSFAKMRTTSVRKLLPESWGFLCPVHTPDGEPCGLLNHMTSTCRISSFYNSEG 240

Query: 1600 EASDVSQVPKALT-------QLGVLPADSFAAGPNLCCVQLDGKIVGWTTHEQGRIVADT 1758
               D  ++  +L           +LP       P +  V +DG IVG     +   V   
Sbjct: 241  ATKDFQKIKMSLIARLVGAGMAQLLPRIERTGPPEVLHVHVDGCIVGSIASAKIEEV--- 297

Query: 1759 LRYWKVNGGHGLPLDLEIGYVPPSNKGQYPGLYIFGGHSRMMRPVKYLPLDKEDIVGPFE 1938
                       +P DLE+GYVP S+ G YPGLY+F   +R +RP              F 
Sbjct: 298  -----------IPEDLEVGYVPLSHGGAYPGLYLFTNPARFLRPA-------------FM 333

Query: 1939 QVYMNVAVTPEEIENNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGT 2118
            ++           +    +H E  PT ILS++ANLTP+SD NQSPRNMYQCQM KQTMG 
Sbjct: 334  EIRCPDGGDGGRNKLFPATHEEIHPTAILSVVANLTPWSDHNQSPRNMYQCQMAKQTMGF 393

Query: 2119 PGTALVHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMI 2298
             G AL  R+D K + LQT QTPIV+   Y  Y MD FP+G NAIVAV+SYTGYDM+DAMI
Sbjct: 394  CGQALKFRTDVKAFHLQTPQTPIVRTATYSKYCMDEFPSGTNAIVAVLSYTGYDMEDAMI 453

Query: 2299 INKSADERGFGYGTVYKTEKVDLSQSRRRGDPITQHFGFGSDEWPEAWKEKLDADGLPLI 2478
            +NKSA +RG   G +++TE +DLS   R  D +T+   F            +++DGLP I
Sbjct: 454  LNKSAVDRGMFRGHIFQTECIDLSAKSR--DNVTEF--FCKSNLSRDTTAAIESDGLPRI 509

Query: 2479 GVKVEEGDPIVAYYDDTLGKTKVKTYHSSEPAYIEEVKLLGDDSNEQEGQQITIKYRITR 2658
            G  +   +   +  ++  G  +      SEPA I+ V + G +  ++  Q+  I+ R  R
Sbjct: 510  GENIFPNEQYYSVCNNLTGTVRPIKLKGSEPAAIDYVAVNGTNFKDRL-QKANIRLRRVR 568

Query: 2659 QPLIGDKFSSRHGQKGVCSRKWPQIDMPFT-ESGMQPDVIINPHAFPSRMTIGMFVESLA 2835
             P+IGDKFSSRHGQKGVCS+ WP IDMPF+  +GM+PD+IINPHAFPSRMTI M +ES+A
Sbjct: 569  NPIIGDKFSSRHGQKGVCSQLWPDIDMPFSANTGMRPDLIINPHAFPSRMTIAMLLESIA 628

Query: 2836 GKAGALHGIAQDSTPWKFN---EQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEELRCD 3006
             KAG+L G   D+TP+  +     ++  D  G  L   G+NYHG E +YSG  G E++C+
Sbjct: 629  AKAGSLKGKFIDATPFASSVKERSNSIVDELGPMLASYGFNYHGTEILYSGVFGTEMKCE 688

Query: 3007 IYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTS 3186
            I++G VYYQRLRHMV+DKFQVR+TG ++ +T QP+ GRK  GGIR GEMERDAL+ HG S
Sbjct: 689  IFLGPVYYQRLRHMVSDKFQVRTTGRIDQITRQPIGGRKYGGGIRFGEMERDALLAHGAS 748

Query: 3187 FLLQDRLLNCSDYTQTPVCRSCGSILTTQTSVPRIGSMASIRCRRCAVGLDKY---EGYA 3357
            +LL DRL +CSDY    VC  CGS+LT       I S +  + +R  +GL      + +A
Sbjct: 749  YLLHDRLHSCSDYHIADVCSICGSLLTATV----IKSESQKKAKRDMLGLPTVKPPKNFA 804

Query: 3358 ADSDIWEDGHGKKFVGGDDTTTVAIPFVLKYLDSELSAMGIKM 3486
              +     G            TVA+P+V +YL SEL+AM IK+
Sbjct: 805  CQACKTSKG----------METVAMPYVFRYLASELAAMNIKL 837


>Q98S72|RPA2|Q98S72 (TrEMBL: Guillardia theta (Cryptomonas phi))
            DNA-directed RNA polymerase I 135K chain (EC 2.7.7.6)
            (DNA-directed RNA polymerase beta chain).
          Length = 1109

 Score =  620 bits (1598), Expect = e-176
 Identities = 363/1013 (35%), Positives = 570/1013 (56%), Gaps = 39/1013 (3%)
 Frame = +1

Query: 301  SLNRKTFPSECRERMVTYRSRLMLNVTWSVNDEEEVLEVREAGQIPIMLKSNRCHLEKLS 480
            +L  K  P + +E  +TY+   ++++    N++   L  +E G  PIM+KS +C+L  L 
Sbjct: 66   TLIHKILPRQSKELKITYQGEFIISINIQNNEKNFNLVYKE-GDFPIMIKSLKCNLFGLK 124

Query: 481  PNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQI 660
            P+QL E  EE  E GGYFI NG EKLIR++IV RRN+     + S   RG +++ F   I
Sbjct: 125  PHQLTEIDEEEFENGGYFITNGTEKLIRLIIVPRRNYIFTSSKISNTLRGKNFSSFACSI 184

Query: 661  RSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFLVPVVMILKALIETNDREIFDGIVGND 840
            R V     S+T  LHYL +G++  RF  R  EF  PVV+ILKA+ + +D EIF  I  N 
Sbjct: 185  RCVNRYGLSRTFHLHYLTNGSILCRFIIRNQEFFFPVVIILKAIKDVSDTEIFKDITNNL 244

Query: 841  TENSFLTD-RLELLLRTYKTYNLYSQQETLAYLGDKFRVVFGASPDMSDIEVGKEVLKRI 1017
             +N+   +  ++L+  +Y       +   L Y+G  F+ +F     ++++E GK +++  
Sbjct: 245  HDNNMFKEVAIKLISDSYNYIKSNFRDNYLEYIGKLFK-IFEKKIHLNNLETGKNLIENN 303

Query: 1018 VLVHLPNNAD-KFRMLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIE 1194
            + +H+ N+ + K+ +L++MI+KL     G    +NPD+ + QE+LL G L G I+++K+ 
Sbjct: 304  LFIHVENDMNQKYLLLIYMIQKLIKSRMGLNLGENPDSIEFQEILLSGNLIGSILEKKLS 363

Query: 1195 EYLQNIKLQIQSDINRGVGINFDDRKYMTRVFLRINENIGQKLQYFLSTGNLVSQSGLDL 1374
                 IK+    +I      N   RK  T++ +++  N    ++Y +S+GN+      ++
Sbjct: 364  ANFDLIKIDEFMNIE-----NSPIRK--TKLIMKVFSNFSVGIRYLISSGNVPLIVNFEI 416

Query: 1375 QQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSP 1554
             Q SG+ +  E+ N+ RF+S FR +HRG +F  LKTT+ RKL+P +WG+LCP+HTPDGS 
Sbjct: 417  PQTSGFNISIERNNYSRFLSFFRSIHRGKYFTTLKTTSGRKLMPSNWGYLCPIHTPDGSL 476

Query: 1555 CGLLNHLSHKCKIATEASDVSQVPKALTQLGVLP--------ADSFAAGPNLCCVQLDGK 1710
            CG+LNHL+         S ++ V   + ++  L          D  +       + LDGK
Sbjct: 477  CGILNHLT--------ISSITSVVNPIERINFLKYFKKHKTIFDRLSFKNRTSIILLDGK 528

Query: 1711 IVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPSNKGQYPGLYIFGGHSRMMRP 1890
            I+G++T    +   D +R  KV+        +EI  +   N      L I+   +R++RP
Sbjct: 529  IIGFSTEIFLKWFTDKIRCEKVSDFGIFSNSIEIVCLKNENILNLFELKIYSSEARLLRP 588

Query: 1891 VKYLPLDKE-------------------DIVGPFEQVYMNVAVTPEEIENNI---HSHVE 2004
            V++   +                     +++G  EQ Y+N+  +    +  I   ++H E
Sbjct: 589  VRWNSFNSNFNKTNSKNESSFTYNFHTIELIGSLEQSYLNIHQSIFTKKGEICLLYTHYE 648

Query: 2005 FTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTP 2184
                NI SI+   TPF D NQSPRNMYQCQM KQ++G P   +  + D+K+Y L + Q P
Sbjct: 649  IDNLNIFSIVPGCTPFFDMNQSPRNMYQCQMAKQSIGIPFHNIWRKMDSKIYFLFSVQIP 708

Query: 2185 IVKANL-YDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKV 2361
            I +  +  D  G+DNF NG NA+V V+SY+ +DM+DA++ NKS+ ERG G   +Y T   
Sbjct: 709  ICRNKINQDGLGLDNFINGFNAVVGVLSYSSFDMEDAVVFNKSSIERGLGMSYIYNTSNF 768

Query: 2362 DLSQSRRRG---DPITQHFGFGSDEWPEAWKEKLDADGLPLIGVKVEEGDPIV---AYYD 2523
            D++ S  +    +  T H+                 DG+  +G  +++ D I+      +
Sbjct: 769  DVNLSMIKNLNKNYSTLHYNC--------------LDGICNVGNALKKKDIILLNNKLVN 814

Query: 2524 DTLGKTKVKTYHSSEPAYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQK 2703
            + L +     Y++ E A ++ VK+L + S  Q    + I+ +  R+P+ GDKF+SRHGQK
Sbjct: 815  NKLVRETTINYNNDEIASVDCVKILKNYSKIQSKHNVMIRLKSKRKPIEGDKFASRHGQK 874

Query: 2704 GVCSRKWPQIDMPFTESGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPW 2883
            G+ S K+   ++PF+E+G+ PD++ NPH FPSRMTIGM +ESL+GK+GAL+G   DS+P+
Sbjct: 875  GILSFKYEVENLPFSETGIIPDILFNPHGFPSRMTIGMVIESLSGKSGALNGNFNDSSPF 934

Query: 2884 KFNEQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKF 3063
                    +  FGE L + G+ ++G E  YSG  G  L+ D+++G ++YQRL+HM+ DKF
Sbjct: 935  TSFLNCNKSYIFGEFLRENGFEFYGKEMFYSGFVGLPLQTDVFVGVIHYQRLKHMILDKF 994

Query: 3064 QVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSD 3222
            QV +    N LT QP+KGRK  G IR+GEMERDAL+GHG  FLL +++   SD
Sbjct: 995  QVSNNSARNHLTRQPIKGRKLGGSIRLGEMERDALLGHGCIFLLHEKMQKSSD 1047


>Q9BSR4|POLR1B|Q9BSR4 (TrEMBL: Homo sapiens (Human)) POLR1B protein
            (Fragment).
          Length = 585

 Score =  583 bits (1504), Expect = e-165
 Identities = 298/603 (49%), Positives = 404/603 (66%), Gaps = 1/603 (0%)
 Frame = +1

Query: 1693 VQLDGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPSNKGQ-YPGLYIFGG 1869
            V LDG +VGW   +    +AD+LR++KV     +P  +E+  +P + K   YPGL++F  
Sbjct: 6    VLLDGVMVGWVDKDLAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTT 65

Query: 1870 HSRMMRPVKYLPLDKEDIVGPFEQVYMNVAVTPEEIENNIHSHVEFTPTNILSILANLTP 2049
              R++RPV+ L L KE+++G  EQ++MNVA+  +E+   + +H E  P ++LS++AN  P
Sbjct: 66   PCRLVRPVQNLALGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIP 125

Query: 2050 FSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKANLYDDYGMDNF 2229
            FSD NQSPRNMYQCQMGKQTMG P      RSDNKLYRLQT Q+P+V+ ++YD Y MDN+
Sbjct: 126  FSDHNQSPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNY 185

Query: 2230 PNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQSRRRGDPITQHF 2409
            P G NAIVAVISYTGYDM+DAMI+NK++ ERGF +G+VYK+E +DLS+  ++GD      
Sbjct: 186  PIGTNAIVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGD---SSL 242

Query: 2410 GFGSDEWPEAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTYHSSEPAYIEEV 2589
             FG         +KLD DGLP IG K++ GDP  +Y +   G++ V  Y S E   ++ +
Sbjct: 243  VFGIKPGDPRVLQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNI 302

Query: 2590 KLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPD 2769
            K+  +D+   + + + I  R+ R P IGDKF+SRHGQKG+ SR WP  DMPFTESGM PD
Sbjct: 303  KVCSNDTGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPD 362

Query: 2770 VIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFNEQDTPADYFGEQLLKAGYN 2949
            ++ NPH FPSRMTIGM +ES+AGK+ ALHG+  D+TP+ F+E+++  +YFGE L  AGYN
Sbjct: 363  ILFNPHGFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYN 422

Query: 2950 YHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRS 3129
            ++G E +YSG +G EL  DI+IG VYYQRLRHMV+DKFQVR+TG  + +T QP+ GR   
Sbjct: 423  FYGTERLYSGISGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQ 482

Query: 3130 GGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPVCRSCGSILTTQTSVPRIGSMASI 3309
            GGIR GEMERDAL+ HGTSFLL DRL NCSD +   VC  CGS+L+     P   S +++
Sbjct: 483  GGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAHVCVKCGSLLSPLLEKPP-PSWSAM 541

Query: 3310 RCRRCAVGLDKYEGYAADSDIWEDGHGKKFVGGDDTTTVAIPFVLKYLDSELSAMGIKMR 3489
            R R+    L                        D   TV++P+V +Y  +EL+AM IK++
Sbjct: 542  RNRKYNCTLCS--------------------RSDTIDTVSVPYVFRYFVAELAAMNIKVK 581

Query: 3490 YNV 3498
             +V
Sbjct: 582  LDV 584


>Q9H6S8||Q9H6S8 (TrEMBL: Homo sapiens (Human)) Hypothetical protein
            FLJ21921 (EC 2.7.7.6) (DNA-directed RNA polymerase beta
            chain).
          Length = 459

 Score =  502 bits (1292), Expect = e-140
 Identities = 245/441 (55%), Positives = 316/441 (71%)
 Frame = +1

Query: 1948 MNVAVTPEEIENNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGT 2127
            MNVA+  +E+   + +H E  P ++LS++AN  PFSD NQSPRNMYQCQMGKQTMG P  
Sbjct: 1    MNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDLNQSPRNMYQCQMGKQTMGFPLL 60

Query: 2128 ALVHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINK 2307
                RSDNKLYRLQT Q+P+V+ ++YD Y MDN+P G NAIVAVISYTGYDM+DAMI+NK
Sbjct: 61   TYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNAIVAVISYTGYDMEDAMIVNK 120

Query: 2308 SADERGFGYGTVYKTEKVDLSQSRRRGDPITQHFGFGSDEWPEAWKEKLDADGLPLIGVK 2487
            ++ ERGF +G+VYK+E +DLS+  ++GD       FG         +KLD DGLP IG K
Sbjct: 121  ASWERGFAHGSVYKSEFIDLSEKIKQGD---SSLVFGIKPGDPRVLQKLDDDGLPFIGAK 177

Query: 2488 VEEGDPIVAYYDDTLGKTKVKTYHSSEPAYIEEVKLLGDDSNEQEGQQITIKYRITRQPL 2667
            ++ GDP  +Y +   G++ V  Y S E   ++ +K+  +D+   + + + I  R+ R P 
Sbjct: 178  LQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSNDTGSGKFKCVCITMRVPRNPT 237

Query: 2668 IGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVIINPHAFPSRMTIGMFVESLAGKAG 2847
            IGDKF+SRHGQKG+ SR WP  DMPFTESGM PD++ NPH FPSRMTIGM +ES+AGK+ 
Sbjct: 238  IGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPHGFPSRMTIGMLIESMAGKSA 297

Query: 2848 ALHGIAQDSTPWKFNEQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVY 3027
            ALHG+  D+TP+ F+E+++  +YFGE L  AGYN++G E +YSG +G EL  DI+IG VY
Sbjct: 298  ALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTERLYSGISGLELEADIFIGVVY 357

Query: 3028 YQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRL 3207
            YQRLRHMV+DKFQVR+TG  + +T QP+ GR   GGIR GEMERDAL+ HGTSFLL DRL
Sbjct: 358  YQRLRHMVSDKFQVRTTGARDRVTNQPIGGRNVQGGIRFGEMERDALLAHGTSFLLHDRL 417

Query: 3208 LNCSDYTQTPVCRSCGSILTT 3270
             NCSD +   VC      L+T
Sbjct: 418  FNCSDRSVAHVCEVWQFTLST 438


>Q95JH9||Q95JH9 (TrEMBL: Macaca fascicularis (Crab eating macaque)
            (Cynomolgus monkey)) Hypothetical protein (EC 2.7.7.6)
            (DNA-directed RNA polymerase beta chain).
          Length = 441

 Score =  465 bits (1197), Expect = e-129
 Identities = 227/443 (51%), Positives = 310/443 (69%), Gaps = 1/443 (0%)
 Frame = +1

Query: 1711 IVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPSNKGQ-YPGLYIFGGHSRMMR 1887
            +VGW   E    +AD+LR++KV     +P  +E+  +P + K   YPGL++F    R++R
Sbjct: 1    MVGWVDKELAPGIADSLRHFKVLREKRIPPWMEVVLIPMTGKPSLYPGLFLFTTPCRLVR 60

Query: 1888 PVKYLPLDKEDIVGPFEQVYMNVAVTPEEIENNIHSHVEFTPTNILSILANLTPFSDFNQ 2067
            PV+ L L KE+++G  EQ++MNVA+  +E+   + +H E  P ++LS++AN  PFSD NQ
Sbjct: 61   PVQNLELGKEELIGTMEQIFMNVAIFEDEVFAGVTTHQELFPHSLLSVIANFIPFSDHNQ 120

Query: 2068 SPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNA 2247
            SPRNMYQCQMGKQTMG P      RSDNKLYRLQT Q+P+V+ ++YD Y MDN+P G NA
Sbjct: 121  SPRNMYQCQMGKQTMGFPLLTYQDRSDNKLYRLQTPQSPLVRPSMYDYYDMDNYPIGTNA 180

Query: 2248 IVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQSRRRGDPITQHFGFGSDE 2427
            IVAVISYTGYDM+DAMI+NK++ ERGF +G+VYK+E +DLS+  ++GD       FG   
Sbjct: 181  IVAVISYTGYDMEDAMIVNKASWERGFAHGSVYKSEFIDLSEKIKQGD---SSLVFGIKP 237

Query: 2428 WPEAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVKTYHSSEPAYIEEVKLLGDD 2607
                  +KLD DGLP IG K++ GDP  +Y +   G++ V  Y S E   ++ +K+  +D
Sbjct: 238  GDPRILQKLDDDGLPFIGAKLQYGDPYYSYLNLNTGESFVMYYKSKENCVVDNIKVCSND 297

Query: 2608 SNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVIINPH 2787
            +   + + + I  R+ R P IGDKF+SRHGQKG+ SR WP  DMPFTESGM PD++ NPH
Sbjct: 298  TGSGKFKCVCITMRVPRNPTIGDKFASRHGQKGILSRLWPAEDMPFTESGMVPDILFNPH 357

Query: 2788 AFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFNEQDTPADYFGEQLLKAGYNYHGNEP 2967
             FPSRMTIGM +ES+AGK+ ALHG+  D+TP+ F+E+++  +YFGE L  AGYN++G E 
Sbjct: 358  GFPSRMTIGMLIESMAGKSAALHGLCHDATPFIFSEENSALEYFGEMLKAAGYNFYGTER 417

Query: 2968 MYSGATGEELRCDIYIGCVYYQR 3036
            +YSG +G EL  DI+IG VYYQR
Sbjct: 418  LYSGISGLELEADIFIGVVYYQR 440


>Q9NW08|POLR3B|RPC2_HUMAN (SP: Homo sapiens (Human)) DNA-directed RNA
            polymerase III subunit 127.6 kDa polypeptide (EC 2.7.7.6)
            (RNA polymerase III subunit 2) (RPC2).
          Length = 1133

 Score =  451 bits (1161), Expect = e-125
 Identities = 349/1110 (31%), Positives = 536/1110 (48%), Gaps = 55/1110 (4%)
 Frame = +1

Query: 91   LKDAVAPHVGSFNALMDGPDGGLLNLAVKDIGSKTIFDTPETSGRLGNKLKIRVDSVQLA 270
            +K  V  H+ SFN          +N+ +K    K +    + +        ++  ++ + 
Sbjct: 36   VKGLVKQHIDSFNYF--------INVEIK----KIMKANEKVTSDADPMWYLKYLNIYVG 83

Query: 271  KPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDEEEVLEVREAGQIPIMLK 450
             P V   +  ++ R   P ECR R +TY + + +++ ++   +  +      G++PIML+
Sbjct: 84   LPDV--EESFNVTRPVSPHECRLRDMTYSAPITVDIEYTRGSQRIIRNALPIGRMPIMLR 141

Query: 451  SNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRG 630
            S+ C L   +P +  +  E   + GGYFIV G+EK+I  LI ++ +    I+      +G
Sbjct: 142  SSNCVLTGKTPAEFAKLNECPLDPGGYFIVKGVEKVI--LIQEQLSKNRIIVEAD--RKG 197

Query: 631  ASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFLVPVVMILKALIETNDR 810
            A     G  + S   ++ S+TN+   +  G    R +    +  +P+V+I KA+   +D+
Sbjct: 198  A----VGASVTSSTHEKKSRTNMA--VKQGRFYLRHNTLSED--IPIVIIFKAMGVESDQ 249

Query: 811  EIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKFRV--VFGASPDMSD 984
            EI   I   +   +     LE   +      +++Q + L Y+G+K R   ++G  P  + 
Sbjct: 250  EIVQMIGTEEHVMAAFGPSLEECQKA----QIFTQMQALKYIGNKVRRQRMWGGGPKKTK 305

Query: 985  IEVGKEVLKRIVLVHLPNNADKFRMLLF----MIRKLYSLVAGDCAPDNPDATQHQEVLL 1152
            IE  +E+L   +L H+P     FR        M+R++  L  GD   D+ D   ++ + L
Sbjct: 306  IEEARELLASTILTHVPVKEFNFRAKCIYTAVMVRRVI-LAQGDNKVDDRDYYGNKRLEL 364

Query: 1153 GGFLYGMIIKEKIEEYLQNIKLQIQSDINRGVGINFDDRKYMTRVFLRINENIGQKLQYF 1332
             G L  ++ ++  +++   +K      I +     FD  K+M +      + I   +   
Sbjct: 365  AGQLLSLLFEDLFKKFNSEMKKIADQVIPKQRAAQFDVVKHMRQ------DQITNGMVNA 418

Query: 1333 LSTGNL-VSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGS--FFAELKTTTVRKLL 1503
            +STGN  + +  +D Q   G T V  ++++   IS   M+ R S  F    K +  R L 
Sbjct: 419  ISTGNWSLKRFKMDRQ---GVTQVLSRLSY---ISALGMMTRISSQFEKTRKVSGPRSLQ 472

Query: 1504 PESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEASDVSQVPKALTQLGV----LPADSFA 1671
            P  WG LCP  TP+G  CGL+ +L+    I T+  D   + K  + LGV    L      
Sbjct: 473  PSQWGMLCPSDTPEGEACGLVKNLALMTHITTDMED-GPIVKLASNLGVEDVNLLCGEEL 531

Query: 1672 AGPNLCCVQLDGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPSNKGQYPG 1851
            + PN+  V L+G I+G    +  ++V +T R  +  G           +V  S       
Sbjct: 532  SYPNVFLVFLNGNILG-VIRDHKKLV-NTFRLMRRAGYIN-------EFVSISTNLTDRC 582

Query: 1852 LYIFGGHSRMMRPVKYLPLDKEDIVGPF--------------------------EQVYMN 1953
            +YI     R+ RP   +   K  +                              E+   N
Sbjct: 583  VYISSDGGRLCRPYIIVKKQKPAVTNKHMEELAQGYRNFEDFLHESLVEYLDVNEENDCN 642

Query: 1954 VAVTPEEIENNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTAL 2133
            +A+    I N   +H+E  P  +L + A L P+   NQSPRN YQC MGKQ MGT G   
Sbjct: 643  IALYEHTI-NKDTTHLEIEPFTLLGVCAGLIPYPHHNQSPRNTYQCAMGKQAMGTIGYNQ 701

Query: 2134 VHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSA 2313
             +R D  +Y L   Q P+VK    +    +  P G NA VAV+SY+GYD++DA+++NK++
Sbjct: 702  RNRIDTLMYLLAYPQKPMVKTKTIELIEFEKLPAGQNATVAVMSYSGYDIEDALVLNKAS 761

Query: 2314 DERGFGYGTVYKTEKVDLSQ-SRRRGDPITQHFGFGSDEWPEAWKEKLDADGLPLIGVKV 2490
             +RGFG   VYK  K  L + + +  D +       +   P    E LDADG+   G KV
Sbjct: 762  LDRGFGRCLVYKNAKCTLKRYTNQTFDKVMGPMLDAATRKPIWRHEILDADGICSPGEKV 821

Query: 2491 EEGDPIVAYYDDTLGKTKVK---------------TYHSSEPAYIEEVKLLGDDSNEQEG 2625
            E    +V     T+ +  ++               TY  +  +YIE+V +    SN ++ 
Sbjct: 822  ENKQVLVNKSMPTVTQIPLEGSNVPQQPQYKDVPITYKGATDSYIEKVMI---SSNAEDA 878

Query: 2626 QQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVIINPHAFPSRM 2805
              I +  R TR+P IGDKFSSRHGQKGVC    PQ DMPF +SG+ PD+I+NPH FPSRM
Sbjct: 879  FLIKMLLRQTRRPEIGDKFSSRHGQKGVCGLIVPQEDMPFCDSGICPDIIMNPHGFPSRM 938

Query: 2806 TIGMFVESLAGKAGALHGIAQDSTPWKFNEQDTPADYFGEQLLKAGYNYHGNEPMYSGAT 2985
            T+G  +E LAGKAG L G     T +  ++         E L++ GYNY G + + SG T
Sbjct: 939  TVGKLIELLAGKAGVLDGRFHYGTAFGGSKVKDVC----EDLVRHGYNYLGKDYVTSGIT 994

Query: 2986 GEELRCDIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDA 3165
            GE L   IY G VYYQ+L+HMV DK   R+ GP   LT QP +GR R GG+R+GEMERD 
Sbjct: 995  GEPLEAYIYFGPVYYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDC 1054

Query: 3166 LIGHGTSFLLQDRLLNCSDYTQTPVCRSCG 3255
            LIG+G S LL +RL+  SD  +  VC  CG
Sbjct: 1055 LIGYGASMLLLERLMISSDAFEVDVCGQCG 1084


>Q8MRD5|RPIII128|Q8MRD5 (TrEMBL: Drosophila melanogaster (Fruit fly))
            LD14594p (EC 2.7.7.6) (DNA-directed RNA polymerase beta
            chain) (Fragment).
          Length = 1146

 Score =  420 bits (1079), Expect = e-116
 Identities = 328/1065 (30%), Positives = 509/1065 (47%), Gaps = 66/1065 (6%)
 Frame = +1

Query: 259  VQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDEEEVLEVREAGQIP 438
            V++ KP +  +D  ++ + T P ECR R  TY + + +++ ++   +         G++P
Sbjct: 97   VRVGKPDI--DDGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMP 154

Query: 439  IMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSF 618
            +ML+ + C L   S  +L +  E   + GGYF+V G EK+I   ++Q +     ++   F
Sbjct: 155  LMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVI---LIQEQLSWNKMLTEDF 211

Query: 619  GNRGASYTKFGIQIRSVRPDQTSQTNVL-----HYLNDGNVTFRFSWRKNEFLVPVVMIL 783
                        Q+ S   ++ S+T VL     +YL   ++T           +P+V+I 
Sbjct: 212  NG------VVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIF 256

Query: 784  KALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKFRVV-F 960
            KAL   +D+EI   ++G D+++    +R    L       +++QQ  L Y+G K  V  F
Sbjct: 257  KALGVVSDQEI-QSLIGIDSKSQ---NRFGASLIDAYNLKVFTQQRALEYMGSKLVVKRF 312

Query: 961  GASPDMSDIEVGKEVLKRIVLVHLPNNADKFRMLL------FMIRKLYSLVAGDCAPDNP 1122
             ++   +  E  +E+L   +L H+P   D F + +       M+R++ +        D+ 
Sbjct: 313  QSATTKTPSEEARELLLTTILAHVP--VDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDR 370

Query: 1123 DATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRGVGINFDDRKYMTRVFLRIN 1302
            D   ++ + L G L  M+ ++  +     +K     +I +     FD  K+M        
Sbjct: 371  DYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMRAA----- 425

Query: 1303 ENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKT 1482
              I   L+  +S+GN   +      + +G T V  ++++   +     V+   F    K 
Sbjct: 426  -QITAGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN-SQFEKTRKV 481

Query: 1483 TTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEASDVSQVPKALTQLGVLPAD 1662
            +  R L P  WG LCP  TP+G  CGL+ +L+    I TE  +   +  A    GV    
Sbjct: 482  SGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNA-GVEDIR 540

Query: 1663 SFAAGP----NLCCVQLDGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPS 1830
              +  P    N+  V ++G ++G T + +  +    LRY +  G  G  + +   Y    
Sbjct: 541  EVSGNPINNPNVFLVFINGNVLGLTLNHKHLV--RNLRYMRRKGRMGSYVSVHTSYTQRC 598

Query: 1831 NKGQYPGLYIFGGHSRMMRP----------VKYLPLDK--------EDIV--GPFEQVYM 1950
                   +YI     R+ RP          VK   LD+        +D +  G  E + +
Sbjct: 599  -------IYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLIEYLDV 651

Query: 1951 N------VAVTPEEIENNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTM 2112
            N      +A   ++IE+   +H+E  P  +L + A L P+   NQSPRN YQC MGKQ M
Sbjct: 652  NEENDSFIAWNEDQIEDRT-THLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAM 710

Query: 2113 GTPGTALVHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDA 2292
            G  G    +R D+ +Y L     P+VK+   +    D  P G NA VAV+SY+GYD++DA
Sbjct: 711  GMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDA 770

Query: 2293 MIINKSADERGFGYGTVYKTEKVDLSQSRRRG---------DPITQHFGFGSDEWPEAWK 2445
            +I+NK++ +RG+G   VYK  K  + +   +          D +T    F  D       
Sbjct: 771  LILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVIFKHDV------ 824

Query: 2446 EKLDADGLPLIGVKVEEGD-------PIVAYYDDTLGKTKVK-------TYHSSEPAYIE 2583
              LD DG+   G +V+          P V   +   G++          +Y   EP+YIE
Sbjct: 825  --LDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYIE 882

Query: 2584 EVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQ 2763
             V +    +N +E   I I  R TR P IGDKFSSRHGQKGV      Q DMPF + G+ 
Sbjct: 883  RVMV---SANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGIC 939

Query: 2764 PDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFNE-QDTPADYFGEQLLKA 2940
            PD+I+NPH FPSRMT+G  +E L GKAG L G     T +  ++ +D  A+     L + 
Sbjct: 940  PDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGSKVEDIQAE-----LERH 994

Query: 2941 GYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGR 3120
            G+NY G +  YSG TG  L   IY G VYYQ+L+HMV DK   R+ GP   LT QP +GR
Sbjct: 995  GFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGR 1054

Query: 3121 KRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPVCRSCG 3255
             R GG+R+GEMERD LI +G S L+ +RL+  SD  +  VCR+CG
Sbjct: 1055 SREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCG 1099


>Q9V649|RPIII128|Q9V649 (TrEMBL: Drosophila melanogaster (Fruit fly))
            RPIII128 protein (EC 2.7.7.6) (DNA-directed RNA
            polymerase beta chain).
          Length = 1137

 Score =  420 bits (1079), Expect = e-116
 Identities = 328/1065 (30%), Positives = 509/1065 (47%), Gaps = 66/1065 (6%)
 Frame = +1

Query: 259  VQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDEEEVLEVREAGQIP 438
            V++ KP +  +D  ++ + T P ECR R  TY + + +++ ++   +         G++P
Sbjct: 88   VRVGKPDI--DDGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMP 145

Query: 439  IMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSF 618
            +ML+ + C L   S  +L +  E   + GGYF+V G EK+I   ++Q +     ++   F
Sbjct: 146  LMLRCSNCALTGKSEFELSKLNECPLDPGGYFVVRGQEKVI---LIQEQLSWNKMLTEDF 202

Query: 619  GNRGASYTKFGIQIRSVRPDQTSQTNVL-----HYLNDGNVTFRFSWRKNEFLVPVVMIL 783
                        Q+ S   ++ S+T VL     +YL   ++T           +P+V+I 
Sbjct: 203  NG------VVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIF 247

Query: 784  KALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKFRVV-F 960
            KAL   +D+EI   ++G D+++    +R    L       +++QQ  L Y+G K  V  F
Sbjct: 248  KALGVVSDQEI-QSLIGIDSKSQ---NRFGASLIDAYNLKVFTQQRALEYMGSKLVVKRF 303

Query: 961  GASPDMSDIEVGKEVLKRIVLVHLPNNADKFRMLL------FMIRKLYSLVAGDCAPDNP 1122
             ++   +  E  +E+L   +L H+P   D F + +       M+R++ +        D+ 
Sbjct: 304  QSATTKTPSEEARELLLTTILAHVP--VDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDR 361

Query: 1123 DATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRGVGINFDDRKYMTRVFLRIN 1302
            D   ++ + L G L  M+ ++  +     +K     +I +     FD  K+M        
Sbjct: 362  DYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMRAA----- 416

Query: 1303 ENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKT 1482
              I   L+  +S+GN   +      + +G T V  ++++   +     V+   F    K 
Sbjct: 417  -QITAGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN-SQFEKTRKV 472

Query: 1483 TTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEASDVSQVPKALTQLGVLPAD 1662
            +  R L P  WG LCP  TP+G  CGL+ +L+    I TE  +   +  A    GV    
Sbjct: 473  SGPRSLQPSQWGMLCPSDTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNA-GVEDIR 531

Query: 1663 SFAAGP----NLCCVQLDGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPS 1830
              +  P    N+  V ++G ++G T + +  +    LRY +  G  G  + +   Y    
Sbjct: 532  EVSGNPINNPNVFLVFINGNVLGLTLNHKHLV--RNLRYMRRKGRMGSYVSVHTSYTQRC 589

Query: 1831 NKGQYPGLYIFGGHSRMMRP----------VKYLPLDK--------EDIV--GPFEQVYM 1950
                   +YI     R+ RP          VK   LD+        +D +  G  E + +
Sbjct: 590  -------IYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLIEYLDV 642

Query: 1951 N------VAVTPEEIENNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTM 2112
            N      +A   ++IE+   +H+E  P  +L + A L P+   NQSPRN YQC MGKQ M
Sbjct: 643  NEENDSFIAWNEDQIEDRT-THLEIEPFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAM 701

Query: 2113 GTPGTALVHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDA 2292
            G  G    +R D+ +Y L     P+VK+   +    D  P G NA VAV+SY+GYD++DA
Sbjct: 702  GMIGYNQKNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDA 761

Query: 2293 MIINKSADERGFGYGTVYKTEKVDLSQSRRRG---------DPITQHFGFGSDEWPEAWK 2445
            +I+NK++ +RG+G   VYK  K  + +   +          D +T    F  D       
Sbjct: 762  LILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVIFKHDV------ 815

Query: 2446 EKLDADGLPLIGVKVEEGD-------PIVAYYDDTLGKTKVK-------TYHSSEPAYIE 2583
              LD DG+   G +V+          P V   +   G++          +Y   EP+YIE
Sbjct: 816  --LDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYIE 873

Query: 2584 EVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQ 2763
             V +    +N +E   I I  R TR P IGDKFSSRHGQKGV      Q DMPF + G+ 
Sbjct: 874  RVMV---SANAEEDFLIKILLRQTRIPEIGDKFSSRHGQKGVTGLIVEQEDMPFNDFGIC 930

Query: 2764 PDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFNE-QDTPADYFGEQLLKA 2940
            PD+I+NPH FPSRMT+G  +E L GKAG L G     T +  ++ +D  A+     L + 
Sbjct: 931  PDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGSKVEDIQAE-----LERH 985

Query: 2941 GYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGR 3120
            G+NY G +  YSG TG  L   IY G VYYQ+L+HMV DK   R+ GP   LT QP +GR
Sbjct: 986  GFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGR 1045

Query: 3121 KRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPVCRSCG 3255
             R GG+R+GEMERD LI +G S L+ +RL+  SD  +  VCR+CG
Sbjct: 1046 SREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCG 1090


>Q8ZYQ9|PAE0665|Q8ZYQ9 (TrEMBL: Pyrobaculum aerophilum) DNA-directed
            RNA polymerase subunit B (rpoB).
          Length = 1127

 Score =  420 bits (1079), Expect = e-116
 Identities = 332/1052 (31%), Positives = 513/1052 (48%), Gaps = 46/1052 (4%)
 Frame = +1

Query: 238  LKIRVDSVQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDEEEVLEV 417
            LK+ ++ +++  P +  +D        +P E R R  TY + L L  T  V+DE    E 
Sbjct: 70   LKLVLEKIEVGWPRIKESD--GSESLIYPMEARLRNATYSAPLYLTATLYVDDEPYATET 127

Query: 418  REAGQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQRRNHPM 597
               G++PIM+KS RC+L +L P++  +  E+  + GGYFI+NG E   R++I Q     +
Sbjct: 128  FYIGELPIMVKSKRCNLTRLRPSEYAKRFEDPQDFGGYFIINGSE---RVIISQE---DL 181

Query: 598  AIIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFLVPVVM 777
               RP +        +F  +  S      S   V   LN   V +  +       +P  +
Sbjct: 182  VADRPIYDKGDKPSVRFLAKTISTGIGYRSTLTV--ELNKDGVIYA-TLSAMPVKIPFPI 238

Query: 778  ILKALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNL-YSQQETLAYLGDKFRV 954
             +KAL    D ++    V +D E      + ELL        +  ++++ L Y+G K  V
Sbjct: 239  YMKALGLETDEDVVKA-VSDDPEI-----QKELLPSLIAANQIAITREDALDYIGGKVAV 292

Query: 955  VFGASPDMSDIEVGKEVLKRIVLVHLPNNAD-----------KFRMLLFMIRKLYSLVAG 1101
                 P    IE   ++L R  L HL                K  ML  +++ L  L  G
Sbjct: 293  ---GQPRPVRIERALQLLDRYFLPHLGTTVPDEKKQQEIRLKKALMLGQIVKGLVELHLG 349

Query: 1102 DCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRGVGINFDDRKYMT 1281
               PD+ D   ++ V L G L   + +  ++++LQ +K Q++    RG       R    
Sbjct: 350  RRKPDDKDHVGNKRVRLVGDLMTQLFRTVLKQFLQELKSQLEKYYARG-------RIPHI 402

Query: 1282 RVFLRINENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGS 1461
            +  +R  + I ++++  L+TGN V          +G + + ++ N+   +S+ R V   S
Sbjct: 403  QTIVR-PDIITERVRQALATGNWVGGK-------TGVSQILDRTNYLSTLSYLRRVV-SS 453

Query: 1462 FFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEASDVSQVPKALTQ 1641
                      R L P  WG LC V TP+G   GL+ +L+   +I T   D  +V   L  
Sbjct: 454  LSRTQPHFEARDLHPTQWGRLCAVETPEGQNVGLVKNLALLAEITTGV-DEGEVEHMLYN 512

Query: 1642 LGVLPA-DSFAAGPNLCCVQLDGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEI-- 1812
            +GV+P   +   G +   V L+G+++G   H     +A T+R  +  G     +++ +  
Sbjct: 513  MGVIPILKAREEGVSGAEVYLNGRLIG--VHPNPEELAKTVRGLRRQGKISDEINIAVIN 570

Query: 1813 GYVPPSNKG---QYPGLYIFGGHSRMMRP----VKYLPLDKEDIV--------GPFEQVY 1947
            G V  +  G   + P L +  G  ++ R     VK   L  +D+V           E+  
Sbjct: 571  GTVYVNCDGGRIRRPLLVVENGKLKLTREIVEKVKRGDLTWDDLVKMGVVEYLDADEEEN 630

Query: 1948 MNVAVTPEEIENNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGT 2127
             ++A  P     N ++HVE  P++IL  +A++ P+ + NQSPRN Y+  M KQ++G P +
Sbjct: 631  AHIATDPRGNLTN-YTHVEIIPSSILGAIASIIPYIEHNQSPRNQYEAAMAKQSLGLPQS 689

Query: 2128 ALVHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINK 2307
              +++ D++ + L   + PIV     +  G    P G NA+VA+++YTGY+++DA+I+NK
Sbjct: 690  NFLYKLDSRGHMLYYPERPIVTTRGLELIGYSKRPAGQNAVVALLTYTGYNIEDAVILNK 749

Query: 2308 SADERGFGYGTVYKT-----EKVDLSQSRRRGDPITQHFGFGSDEWPEAWKEKLDADGLP 2472
            ++ ERG      Y+T     +K    +  R   P +   G+     PEA+   LD DG+ 
Sbjct: 750  ASVERGMFRSVFYRTYETEEQKYPGGEEDRIEIPDSSVKGYRG---PEAYSH-LDEDGIA 805

Query: 2473 LIGVKVEEGDPIVA------YYDDTLGKTKVKTYHSSEPAYIEEVKLLGDD---SNEQEG 2625
               V V   + ++       +Y     +  +K    +  A     K + D    +   EG
Sbjct: 806  PPEVYVSSNEVLIGKTSPPRFYTTLEAERILKERRDASVAVRRGEKGIVDKVIITESPEG 865

Query: 2626 QQIT-IKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVIINPHAFPSR 2802
             ++  ++ R  R P +GDKF+SRHGQKGV      Q DMPFTE G+ PD+I+NPHA PSR
Sbjct: 866  NKLVKVRLRELRVPELGDKFASRHGQKGVVGMLLRQEDMPFTEDGIVPDIIVNPHALPSR 925

Query: 2803 MTIGMFVESLAGKAGALHGIAQDSTPWK-FNEQDTPADYFGEQLLKAGYNYHGNEPMYSG 2979
            MT+   +ES+AGK GA  G   D+TP++   E+D       + LLK GY + G E MYSG
Sbjct: 926  MTVAQLLESIAGKLGASTGQLIDATPFEGVKEED-----LRKLLLKLGYKWDGKEVMYSG 980

Query: 2980 ATGEELRCDIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMER 3159
             TGE L  DI+IG VYYQ+L HMV DK   R+ GPV  LT QP +GR R GG+R+GEMER
Sbjct: 981  ITGERLVADIFIGIVYYQKLHHMVADKIHARARGPVQILTRQPTEGRSREGGLRLGEMER 1040

Query: 3160 DALIGHGTSFLLQDRLLNCSDYTQTPVCRSCG 3255
            D LI HG S LL +RL+  SD     VC  CG
Sbjct: 1041 DVLIAHGASALLHERLVESSDKYVMYVCELCG 1072


>Q8SQY8|ECU11_0370|Q8SQY8 (TrEMBL: Encephalitozoon cuniculi)
            DNA-directed RNA polymerase III subunit 2 (EC 2.7.7.6)
            (130kDa subunit) (DNA-directed RNA polymerase beta
            chain).
          Length = 1110

 Score =  413 bits (1062), Expect = e-114
 Identities = 331/1059 (31%), Positives = 504/1059 (47%), Gaps = 60/1059 (5%)
 Frame = +1

Query: 259  VQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDEEEVLEVREAGQIP 438
            +++A PSV  N    +N   FP ECR R +TY + + +++ +  N +  V      G++P
Sbjct: 60   IRVAMPSVEEN---MVNYNVFPIECRLRDITYSANIYVDIEYVRNRQIIVKRDVCIGKMP 116

Query: 439  IMLKSNRCHLE----------KLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQRRN 588
            +ML+S+RCHL           K    ++ E++E   ++GGYFIV GIE+++  LI ++ +
Sbjct: 117  VMLRSSRCHLRRETKGPMEGRKTKDRRIRESQECPLDVGGYFIVRGIERVV--LIQEQLS 174

Query: 589  HPMAIIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFLVP 768
                II        AS T       S   +  S+T+V     D     + S    E  VP
Sbjct: 175  KNRIIIESGPKGLFASVT-------SSTDEHKSKTSVT--TRDDCYYLKNSMFSEE--VP 223

Query: 769  VVMILKALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKF 948
            VV+++KAL    DRE+ +  VG +     +    E + +      ++++++ L Y+    
Sbjct: 224  VVIMMKALGLVQDREVAE-CVGKEYFEIMVPSFGECMSK-----GIFTREQALLYISSYI 277

Query: 949  RVVFGASPDMSDIEVGKEVLKRIVLVHLPNNADKFRM----LLFMIRKLYSLVAGDCAPD 1116
            ++     P+ + IE    VL   VL ++       R     +  M+R+L          D
Sbjct: 278  KL----KPEDNRIEEVLTVLSEKVLPNVQIEGCDLRKKGIYIALMVRRLAQTKLNILRED 333

Query: 1117 NPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRGVGINFDDRKYMTRVFLR 1296
            + D   ++   L G L  ++ ++  + +      +++  I++ +      +++    FL 
Sbjct: 334  DKDFVGNKRFELAGQLLSILFEDTFKRF----NFELKKSIDKILSKRSRAQEFDALTFLN 389

Query: 1297 INEN-IGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAE 1473
            +  N I   L   +STGN   +      + SG T V  + ++   +     ++   F   
Sbjct: 390  LQANMITSTLARAISTGNWNLKRFR--MERSGVTHVLSRHSYISALGMMTKIN-SHFEKT 446

Query: 1474 LKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEASDVSQVPKALTQLGVL 1653
             K +  R L   SWG LCPV TP+G  CGL+ +L+   +I T  SD   +   + +LGV+
Sbjct: 447  RKVSGPRSLHTSSWGMLCPVDTPEGESCGLVKNLALLAEITTN-SDTKPILDTVYKLGVV 505

Query: 1654 PADSFAAGP----NLCCVQLDGKIVGWTT-----------HEQGRIVADTLRYWKV---- 1776
              +S         ++  V L+G I+G T            H +  +V   +  +KV    
Sbjct: 506  DINSVYTREIHQKDMFSVFLNGDIIGITNRADFLVEQFKLHRRKGLVGKFVSIYKVTVER 565

Query: 1777 -------NGGHGLPLDL----EIGYVPPSNKGQY--------PGLYIFGGHSRMMRPVKY 1899
                   NG    PL +     I     SN+             + I  G S     +KY
Sbjct: 566  VIHIASDNGRVCRPLIIIDKNRINQTIISNQMDECLKALNISEKVAIESGKSLFDCYLKY 625

Query: 1900 LPLDKEDIVGPFEQVYMN------VAVTPEEIENNIHSHVEFTPTNILSILANLTPFSDF 2061
                     G  E + +N      VA+ PE+I     +H+E +   IL  +A L PF   
Sbjct: 626  KSFTDLLEEGFIEYLDVNEENDCLVALKPEDIGEET-THLEISEFAILGYVAGLVPFPHH 684

Query: 2062 NQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGM 2241
            NQSPRN YQC MGKQ +G     +  R D+ + +L     P+V   + D    +  P G 
Sbjct: 685  NQSPRNTYQCAMGKQAIGHISLNVKKRFDSVILQLTYTHRPMVSTKILDLINYNEIPAGQ 744

Query: 2242 NAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQSRRRGDPITQHFGFGS 2421
            NA+VAV+SY+GYD++DA+++NK++ ERG     VYKT    L +            G   
Sbjct: 745  NAMVAVMSYSGYDIEDALVLNKTSVERGLFRVEVYKTTTTLLKKHSN---------GMSD 795

Query: 2422 DEWPEAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGKTKVK-TYHSSEPAYIEEVKLL 2598
              WP   +  LD DGL   G  V +G   V       G  K     H  +PAYI+++ + 
Sbjct: 796  VLWPNPKESVLDEDGLGKPGKMVRDGTVYVNKMSPVDGTYKFTGKVHRGDPAYIDKILI- 854

Query: 2599 GDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVII 2778
               +  Q+   I    R TR P IGDKFSSRHGQKGV      Q DMPF + G+ PD+I+
Sbjct: 855  ---TKSQDQVLIKTMLRQTRVPEIGDKFSSRHGQKGVVGLLVRQEDMPFNDQGIVPDIIM 911

Query: 2779 NPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFNEQDTPADYFGEQLLKAGYNYHG 2958
            NPH FPSRMT+G  VE ++GKAG L G   DST +K N  +       E L+K G++Y G
Sbjct: 912  NPHGFPSRMTVGKIVELISGKAGVLEGQILDSTAFKENSVEQTC----ELLIKHGFSYSG 967

Query: 2959 NEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGI 3138
             +   SG TG  L   I+ G V+YQRL+HMV DK  +R+ GP   LT QP +GR + GG+
Sbjct: 968  KDCFTSGTTGAPLAAYIFFGPVFYQRLKHMVADKIHMRARGPRAILTRQPTEGRSKDGGL 1027

Query: 3139 RVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPVCRSCG 3255
            ++GEMERD LIG+G S L+ +RL+  SD  +  VCRSCG
Sbjct: 1028 KLGEMERDCLIGYGASSLITERLMTSSDVFEAYVCRSCG 1066


>P25167|RPIII128|RPC2_DROME (SP: Drosophila melanogaster (Fruit fly))
            DNA-directed RNA polymerase III 128 kDa polypeptide (EC
            2.7.7.6) (RNA polymerase III subunit 2).
          Length = 1135

 Score =  410 bits (1055), Expect = e-113
 Identities = 328/1065 (30%), Positives = 509/1065 (47%), Gaps = 66/1065 (6%)
 Frame = +1

Query: 259  VQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDEEEVLEVREAGQIP 438
            V++ KP +  +D  ++ + T P ECR R  TY + + +++ ++   +         G++P
Sbjct: 88   VRVGKPDI--DDGFNITKATTPHECRLRDTTYSAPITVDIEYTRGTQRIKRNNLLIGRMP 145

Query: 439  IMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSF 618
            +ML+SN C L   S  +L +  E   + GGYF+V G EK+I   ++Q +     ++   F
Sbjct: 146  LMLRSN-CALTGKSEFELSKLNECPLDPGGYFVVRGQEKVI---LIQEQLSWNKMLTEDF 201

Query: 619  GNRGASYTKFGIQIRSVRPDQTSQTNVL-----HYLNDGNVTFRFSWRKNEFLVPVVMIL 783
                        Q+ S   ++ S+T VL     +YL   ++T           +P+V+I 
Sbjct: 202  NG------VVQCQVTSSTHEKKSRTLVLSKHGKYYLKHNSMTDD---------IPIVVIF 246

Query: 784  KALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYSQQETLAYLGDKFRVV-F 960
            KAL   +D+EI   ++G D+++    +R    L       +++QQ  L Y+G K  V  F
Sbjct: 247  KALGVVSDQEI-QSLIGIDSKSQ---NRFGASLIDAYNLKVFTQQRALEYMGSKLVVKRF 302

Query: 961  GASPDMSDIEVGKEVLKRIVLVHLPNNADKFRMLL------FMIRKLYSLVAGDCAPDNP 1122
             ++   +  E  +E+L   +L H+P   D F + +       M+R++ +        D+ 
Sbjct: 303  QSATTKTPSEEARELLLTTILAHVP--VDNFNLQMKAIYVSMMVRRVMAAELDKTLFDDR 360

Query: 1123 DATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRGVGINFDDRKYMTRVFLRIN 1302
            D   ++ + L G L  M+ ++  +     +K     +I +     FD  K+M        
Sbjct: 361  DYYGNKRLELAGSLLSMMFEDLFKRMNWELKTIADKNIPKVKAAQFDVVKHMRAA----- 415

Query: 1303 ENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFAELKT 1482
              I   L+  +S+GN   +      + +G T V  ++++   +     V+   F    K 
Sbjct: 416  -QITAGLESAISSGNWTIKRFK--MERAGVTQVLSRLSYISALGMMTRVN-SQFEKTRKV 471

Query: 1483 TTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEASDVSQVPKALTQLGVLPAD 1662
            +  R L P  WG LCP +TP+G  CGL+ +L+    I TE  +   +  A    GV    
Sbjct: 472  SGPRSLQPSQWGMLCPSYTPEGEACGLVKNLALMTHITTEVEERPVMIVAFNA-GVEDIR 530

Query: 1663 SFAAGP----NLCCVQLDGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDLEIGYVPPS 1830
              +  P    N+  V ++G ++G T + +  +    LRY +  G  G  + +   Y    
Sbjct: 531  EVSGNPINNPNVFLVFINGNVLGLTLNHKHLV--RNLRYMRRKGRMGSYVSVHTSYTQRC 588

Query: 1831 NKGQYPGLYIFGGHSRMMRP----------VKYLPLDK--------EDIV--GPFEQVYM 1950
                   +YI     R+ RP          VK   LD+        +D +  G  E + +
Sbjct: 589  -------IYIHTDGGRLCRPYVIVENRRPLVKQHHLDELNRGIRKFDDFLLDGLIEYLDV 641

Query: 1951 N------VAVTPEEIENNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTM 2112
            N      +A   ++IE+   +H+E     +L + A L P+   NQSPRN YQC MGKQ M
Sbjct: 642  NEENDSFIAWNEDQIEDRT-THLEIETFTLLGVCAGLVPYPHHNQSPRNTYQCAMGKQAM 700

Query: 2113 GTPGTALVHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDA 2292
            G  G    +R D+ +Y L     P+VK+   +    D  P G NA VAV+SY+GYD++DA
Sbjct: 701  GMIGYNHNNRIDSLMYNLVYPHAPMVKSKTIELTNFDKLPAGQNATVAVMSYSGYDIEDA 760

Query: 2293 MIINKSADERGFGYGTVYKTEKVDLSQSRRRG---------DPITQHFGFGSDEWPEAWK 2445
            +I+NK++ +RG+G   VYK  K  + +   +          D +T    F  D       
Sbjct: 761  LILNKASIDRGYGRCLVYKNSKCTVKRYANQTFDRIMGPMKDALTNKVIFKHDV------ 814

Query: 2446 EKLDADGLPLIGVKVEEGD-------PIVAYYDDTLGKTKVK-------TYHSSEPAYIE 2583
              LD DG+   G +V+          P V   +   G++          +Y   EP+YIE
Sbjct: 815  --LDTDGIVAPGEQVQNKQIMINKEMPAVTSMNPLQGQSAQVPYTAVPISYKGPEPSYIE 872

Query: 2584 EVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQ 2763
             V +    +N +E   I I  R TR P  GDKFSSRHGQKGV      Q DMPF + G+ 
Sbjct: 873  RVMV---SANAEEDFLIKILLRQTRIPR-GDKFSSRHGQKGVTGLIVEQEDMPFNDFGIC 928

Query: 2764 PDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFNE-QDTPADYFGEQLLKA 2940
            PD+I+NPH FPSRMT+G  +E L GKAG L G     T +  ++ +D  A+     L + 
Sbjct: 929  PDMIMNPHGFPSRMTVGKTLELLGGKAGLLEGKFHYGTAFGGSKVEDIQAE-----LERH 983

Query: 2941 GYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGR 3120
            G+NY G +  YSG TG  L   IY G VYYQ+L+HMV DK   R+ GP   LT QP +GR
Sbjct: 984  GFNYVGKDFFYSGITGTPLEAYIYSGPVYYQKLKHMVQDKMHARARGPKAVLTRQPTQGR 1043

Query: 3121 KRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPVCRSCG 3255
             R GG+R+GEMERD LI +G S L+ +RL+  SD  +  VCR+CG
Sbjct: 1044 SREGGLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCG 1088


>P22276|RPC2|RPC2_YEAST (SP: Saccharomyces cerevisiae (Baker's yeast))
            DNA-directed RNA polymerase III 130 kDa polypeptide (EC
            2.7.7.6) (C128) (RNA polymerase III subunit 2).
          Length = 1149

 Score =  408 bits (1048), Expect = e-112
 Identities = 321/1037 (30%), Positives = 506/1037 (48%), Gaps = 57/1037 (5%)
 Frame = +1

Query: 316  TFPSECRERMVTYRSRLMLNVTWSVNDEEEVLEVREAGQIPIMLKSNRCHLEKLSPNQLV 495
            T P ECR R +TY + + +++ ++      + +  E G++PIML+SN+C L     +++ 
Sbjct: 113  TPPHECRLRDMTYSAPIYVDIEYTRGRNIIMHKDVEIGRMPIMLRSNKCILYDADESKMA 172

Query: 496  EAKEESDELGGYFIVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRSVRP 675
            +  E   + GGYFIVNG EK+I   +VQ +     II  +   +G         + S   
Sbjct: 173  KLNECPLDPGGYFIVNGTEKVI---LVQEQLSKNRIIVEADEKKGIVQAS----VTSSTH 225

Query: 676  DQTSQTNVLHYLNDGNVTFRFSWRKNEFLVPVVMILKALIETNDREIFDGIVGNDTENSF 855
            ++ S+T V+    +G +  + +    E  +P+ ++LKA    +D EI   + GND   S 
Sbjct: 226  ERKSKTYVI--TKNGKIYLKHNSIAEE--IPIAIVLKACGILSDLEIMQLVCGND---SS 278

Query: 856  LTDRLELLLRTYKTYNLYSQQETLAYLGDKFRVVFGASPDMSDIEVGKEVLKRIVLVHLP 1035
              D   + L      ++Y+QQ+ L Y+G K + +      ++ ++ G E +   V+ HL 
Sbjct: 279  YQDIFAVNLEESSKLDIYTQQQALEYIGAKVKTM--RRQKLTILQEGIEAIATTVIAHLT 336

Query: 1036 NNADKFR----MLLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYL 1203
              A  FR     +  M R++   +      D+ D   ++ + L G L  ++ ++  +++ 
Sbjct: 337  VEALDFREKALYIAMMTRRVVMAMYNPKMIDDRDYVGNKRLELAGQLISLLFEDLFKKFN 396

Query: 1204 QNIKLQIQSDINRGVGINFDDRKYMTRVFLRIN---ENIGQKLQYFLSTGNLVSQSGLDL 1374
             + KL I   + +       +R       L IN    NI   L   +STGN  S     +
Sbjct: 397  NDFKLSIDKVLKK------PNRAMEYDALLSINVHSNNITSGLNRAISTGNW-SLKRFKM 449

Query: 1375 QQVSGYTVVAEKINFYRFISHFRMVHRGS--FFAELKTTTVRKLLPESWGFLCPVHTPDG 1548
            ++ +G T V  ++++   IS   M+ R S  F    K +  R L P  +G LC   TP+G
Sbjct: 450  ER-AGVTHVLSRLSY---ISALGMMTRISSQFEKSRKVSGPRALQPSQFGMLCTADTPEG 505

Query: 1549 SPCGLLNHLSHKCKIATEASDVSQVPKALTQLGVLPA---DSFAAGPNLCCVQLDGKIVG 1719
              CGL+ +L+    I T+  +   + K    LGV      DS +   N   V L+G ++G
Sbjct: 506  EACGLVKNLALMTHITTDDEE-EPIKKLCYVLGVEDITLIDSASLHLNYG-VYLNGTLIG 563

Query: 1720 WTTHE-----QGRIVADTLRYWKVNGGHGLPLDLEIGYVPPSNKGQYPGLYIFGGHSRM- 1881
                      Q R +  T +  +    +     + +       +   P + +  G SR+ 
Sbjct: 564  SIRFPTKFVTQFRHLRRTGKVSEFISIYSNSHQMAVHIATDGGRICRPLIIVSDGQSRVK 623

Query: 1882 ---MRPVKYLPLDKEDIV--GPFEQVYMN------VAVTPEEIENNIHSHVEFTPTNILS 2028
               +R +    LD +D +  G  E + +N      +A+  ++I  ++ +H+E  P  IL 
Sbjct: 624  DIHLRKLLDGELDFDDFLKLGLVEYLDVNEENDSYIALYEKDIVPSM-THLEIEPFTILG 682

Query: 2029 ILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKANLYD 2208
             +A L P+   NQSPRN YQC MGKQ +G        R D  LY +   Q P+VK    +
Sbjct: 683  AVAGLIPYPHHNQSPRNTYQCAMGKQAIGAIAYNQFKRIDTLLYLMTYPQQPMVKTKTIE 742

Query: 2209 DYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTV----------YKTEK 2358
                D  P G NA VAV+SY+GYD++DA+++NKS+ +RGFG              Y    
Sbjct: 743  LIDYDKLPAGQNATVAVMSYSGYDIEDALVLNKSSIDRGFGRCETRRKTTTVLKRYANHT 802

Query: 2359 VDLSQSRR---RGDPITQHFGFGSDEWPEAWKEKLDADGLPLIGVKVEEGD-------PI 2508
             D+    R    GDPI QH             + L  DGL  +G+KV+ G        P 
Sbjct: 803  QDIIGGMRVDENGDPIWQH-------------QSLGPDGLGEVGMKVQSGQIYINKSVPT 849

Query: 2509 VAYYDDTLGKTKVKT--------YHSSEPAYIEEVKLLGDDSNEQEGQQITIKYRITRQP 2664
             +          V+T        Y   EP++I++V +   D+++     I +  R  R+P
Sbjct: 850  NSADAPNPNNVNVQTQYREAPVIYRGPEPSHIDQVMMSVSDNDQA---LIKVLLRQNRRP 906

Query: 2665 LIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVIINPHAFPSRMTIGMFVESLAGKA 2844
             +GDKFSSRHGQKGVC     Q DMPF + G+ PD+I+NPH FPSRMT+G  +E ++GKA
Sbjct: 907  ELGDKFSSRHGQKGVCGIIVKQEDMPFNDQGIVPDIIMNPHGFPSRMTVGKMIELISGKA 966

Query: 2845 GALHGIAQDSTPWKFNEQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCV 3024
            G L+G  +  T +  ++ +  +    +Q    G+NY G + +YSG TGE L+  I+ G +
Sbjct: 967  GVLNGTLEYGTCFGGSKLEDMSKILVDQ----GFNYSGKDMLYSGITGECLQAYIFFGPI 1022

Query: 3025 YYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDR 3204
            YYQ+L+HMV DK   R+ GP   LT QP +GR R GG+R+GEMERD +I +G S LL +R
Sbjct: 1023 YYQKLKHMVLDKMHARARGPRAVLTRQPTEGRSRDGGLRLGEMERDCVIAYGASQLLLER 1082

Query: 3205 LLNCSDYTQTPVCRSCG 3255
            L+  SD  +  VC  CG
Sbjct: 1083 LMISSDAFEVDVCDKCG 1099


>Q10233|RPC2|RPC2_SCHPO (SP: Schizosaccharomyces pombe (Fission
            yeast)) Putative DNA-directed RNA polymerase III 130 kDa
            polypeptide (EC 2.7.7.6) (RNA polymerase III subunit 2).
          Length = 1165

 Score =  404 bits (1037), Expect = e-111
 Identities = 340/1139 (29%), Positives = 543/1139 (47%), Gaps = 60/1139 (5%)
 Frame = +1

Query: 19   AKFRTLEREKRFQNP-PKDMDSYPLL------KDAVAPHVGSFNALMDGPDGGLLNLAVK 177
            A F+ + + K+  +P P   D + LL      K  V  H+ S+N  +D     ++    K
Sbjct: 29   ALFKPVYKGKKLADPVPTIEDKWQLLPAFLKVKGLVKQHLDSYNYFVDVDLKKIVQANEK 88

Query: 178  DIGS-KTIFDTPETSGRLGNKLKIRVDSVQLAKPSVPANDKLSLNRKTFPSECRERMVTY 354
                 +  F       R+G  ++   D++Q +                 P ECR R +TY
Sbjct: 89   VTSDVEPWFYLKYLDIRVGAPVRTDADAIQAS---------------ISPHECRLRDLTY 133

Query: 355  RSRLMLNVTWSVNDEEEVLEVREAGQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYF 534
             + + +++ ++   +         G++P+ML+SN+C L   +  ++    E   + GGYF
Sbjct: 134  GANIYVDIEYTRGKQVVRRRNVPIGRMPVMLRSNKCVLSGKNEMEMAALNECPLDPGGYF 193

Query: 535  IVNGIEKLIRMLIVQRRNHPMAIIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLN 714
            IV G EK+I +     +N  +    P  G   AS T       S   ++ S+T V+    
Sbjct: 194  IVKGTEKVILVQEQLSKNRIIVEAEPKKGLWQASVT-------SSTHERKSKTYVI--TK 244

Query: 715  DGNVTFRFSWRKNEFLVPVVMILKALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYK 894
            +G +  + +   ++  +P+V++LKA+   +D+EIF+ + G +       D     +    
Sbjct: 245  NGKLYLKHNSVADD--IPIVVVLKAMGLQSDQEIFELVAGAEASYQ---DLFAPSIEECA 299

Query: 895  TYNLYSQQETLAYLGDKFRVVFGASPD-MSDIEVGKEVLKRIVLVHLPNNADKFR----M 1059
              N+Y+ Q+ L Y+G + +V   A  + +   E   EVL  +VL H+     +FR     
Sbjct: 300  KLNIYTAQQALEYIGARVKVNRRAGANRLPPHEEALEVLAAVVLAHINVFNLEFRPKAVY 359

Query: 1060 LLFMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDIN 1239
            +  M R++   +      D+ D   ++ + L G L  ++ ++  +++  ++KL I   + 
Sbjct: 360  IGIMARRVLMAMVDPLQVDDRDYVGNKRLELAGQLLALLFEDLFKKFNSDLKLNIDKVLK 419

Query: 1240 RGVGINFDDRKYMTRVFLRINENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINF 1419
            +       D      V    +++I Q +   LSTGN  S     +++ +G T V  ++++
Sbjct: 420  KPHRTQEFDAYNQLTVH---SDHITQGMVRALSTGNW-SLKRFKMER-AGVTHVLSRLSY 474

Query: 1420 YRFISHFRMVHR--GSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKI 1593
               IS   M+ R    F    K +  R L    +G LC   TP+G  CGL+ +L+    I
Sbjct: 475  ---ISALGMMTRITSQFEKTRKVSGPRSLQASQFGMLCTSDTPEGEACGLVKNLALMTHI 531

Query: 1594 ATEASDVSQVPKA----LTQLGVLPA-DSFAAGPNLCCVQLDGKIVGWTTHEQGRIVA-- 1752
             T+  +   +  A    +  + V+   +  + G  L  V L+G I+G + +    + +  
Sbjct: 532  TTDEEEEPIIKLAYAFGIEDIHVISGRELHSHGTYL--VYLNGAILGISRYPSLFVASFR 589

Query: 1753 DTLRYWKVNGGHGLPLDLEIGYVPPSNKGQY---PGLYIFGG----HSRMMRPVKYLPLD 1911
               R  K++   G+ ++     V  S  G     P + +  G     S+ +R +K     
Sbjct: 590  KLRRSGKISPFIGIFINTHQRAVFISTDGGRICRPLIIVQNGLPKVESKHIRLLKEGKWG 649

Query: 1912 KEDIV--GPFEQVYMN------VAVTPEEIENNIHSHVEFTPTNILSILANLTPFSDFNQ 2067
             ED +  G  E V +N      ++V   +I  +  +H+E  P  IL  +A L P+   NQ
Sbjct: 650  FEDFLKQGLVEYVDVNEENDSLISVYERDITPDT-THLEIEPFTILGAVAGLIPYPHHNQ 708

Query: 2068 SPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNA 2247
            SPRN YQC MGKQ +G      + R D  LY +   Q P+VK    +  G D  P G NA
Sbjct: 709  SPRNTYQCAMGKQAIGAIAYNQLQRIDTLLYLMVYPQQPMVKTKTIELIGYDKLPAGQNA 768

Query: 2248 IVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQ-----SRRRGDPITQHFG 2412
             VA++SY+GYD++DA+++NKS+ +RGFG   V+    V + +       R GDP      
Sbjct: 769  TVAIMSYSGYDIEDALVLNKSSIDRGFGRCQVFHKHSVIVRKYPNGTHDRIGDPQRD--- 825

Query: 2413 FGSDEWPEAWKEKL-DADGLPLIGVKVEEGDPIVAYYDDT--------LGKTKV------ 2547
               +     WK  + + DGL  +G +V+ G   V     T        LG T+       
Sbjct: 826  --PETGEVVWKHGVVEDDGLAGVGCRVQPGQIYVNKQTPTNALDNSITLGHTQTVESGYK 883

Query: 2548 ---KTYHSSEPAYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSR 2718
                TY + EP YI++V L   DS++     I +  R TR+P +GDKFSSRHGQKGVC  
Sbjct: 884  ATPMTYKAPEPGYIDKVMLTTTDSDQT---LIKVLMRQTRRPELGDKFSSRHGQKGVCGV 940

Query: 2719 KWPQIDMPFTESGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFNEQ 2898
               Q DMPF + G+ PD+I+NPH FPSRMT+G  +E L+GK G L G  +  T +     
Sbjct: 941  IVQQEDMPFNDQGICPDIIMNPHGFPSRMTVGKMIELLSGKVGVLRGTLEYGTCFG---- 996

Query: 2899 DTPADYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVRST 3078
             T  +     L++ GYNY G + + SG TGE L   I++G +YYQ+L+HMV DK   R+ 
Sbjct: 997  GTKVEDASRILVEHGYNYSGKDMLTSGITGETLEAYIFMGPIYYQKLKHMVMDKMHARAR 1056

Query: 3079 GPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPVCRSCG 3255
            GP   LT QP +GR R GG+R+GEMERD LI +G S LL +RL+  SD     VC  CG
Sbjct: 1057 GPRAVLTRQPTEGRSRDGGLRLGEMERDCLIAYGASQLLLERLMISSDACDVDVCGQCG 1115


>Q42877|RPB2|RPB2_LYCES (SP: Lycopersicon esculentum (Tomato))
            DNA-directed RNA polymerase II 135 kDa polypeptide (EC
            2.7.7.6) (RNA polymerase II subunit 2).
          Length = 1191

 Score =  404 bits (1037), Expect = e-111
 Identities = 339/1166 (29%), Positives = 527/1166 (45%), Gaps = 83/1166 (7%)
 Frame = +1

Query: 241  KIRVDSVQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSV----NDEEEV 408
            KI    + L+KP +  +D  +     FP   R R +TY + L ++VT  V    +D EEV
Sbjct: 86   KINFGQIYLSKPMMTESDGETAT--LFPKAARLRNLTYSAPLYVDVTKRVIKKGHDGEEV 143

Query: 409  LEVRE-----AGQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLI 573
             E ++      G++PIML+S+ C L + S   L E  E   + GGYFI+NG EK++    
Sbjct: 144  TETQDFTKVFIGKVPIMLRSSYCTLYQNSEKDLTELGECPLDQGGYFIINGSEKVLIAQE 203

Query: 574  VQRRNHPMAIIRPSFGNRGASYTKFGIQIRSV-----RPDQT------SQTNVLHYLNDG 720
                NH        F  R  +   F  ++RS+     RP  T      S+T+     +  
Sbjct: 204  KMSTNHVYV-----FKKRQPNKYAFVAEVRSMADTQNRPPSTMFVRMLSRTSAKGGSSGQ 258

Query: 721  NVTFRFSWRKNEFLVPVVMILKALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYK-T 897
             +     + + E  +P++++ +AL    D++I + I  +  +    T  +ELL  + +  
Sbjct: 259  YIRATLPYIRTE--IPIIIVFRALGFVADKDILEHICYDFND----TQMMELLRPSLEEA 312

Query: 898  YNLYSQQETLAYLGDKFRVVFGASPDMSDIEVGKEVLKRIVLVHLPNN----ADKFRMLL 1065
            + + +QQ  L Y+G +   V G + +   I+  KE+L++ +L H+         K     
Sbjct: 313  FVIQNQQVALDYIGKRGATV-GVTREKR-IKYAKEILQKEMLPHVGVGEYCETKKAYYFG 370

Query: 1066 FMIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRG 1245
            ++I +L     G  A D+ D   ++ + L G L G + +    +  ++++  +Q  ++ G
Sbjct: 371  YIIHRLLLCALGRRAEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRGYVQKCVDNG 430

Query: 1246 VGINFDDRKYMTRVFLRINENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYR 1425
              +N          F    + I   L+Y L+TGN    +    +  +G + V  ++ +  
Sbjct: 431  KDVNLQ--------FAIKAKTITSGLKYSLATGNWGQANAAGTR--AGVSQVLNRLTYAS 480

Query: 1426 FISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEA 1605
             +SH R ++      E K    R+L    WG +CP  TP+G  CGL+ +L+    I T  
Sbjct: 481  TLSHLRRLN-SPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYI-TVG 538

Query: 1606 SDVSQVPKALTQLGVLPADSFAAG--PNLCCVQLDGKIVGWTTHEQGRIVADTLRYWKVN 1779
            S    + + L + G    +  +    P    + ++G  VG   H    ++  TLR  +  
Sbjct: 539  SAAYPILEFLEEWGTENFEEISPAVIPQATKIFVNGTWVG--IHRDPDMLVRTLRRLR-- 594

Query: 1780 GGHGLPLDLEIGYVPPSNKGQYPGLYIFGGHSRMMRPV-----KYLPLDKEDIV------ 1926
                + ++ E+G V      +   L I+  + R  RP+     + L + K+DI       
Sbjct: 595  --RRVDVNTEVGVVRDIRLKE---LRIYTDYGRCSRPLFIVEKQRLMIKKKDIQTLQQRE 649

Query: 1927 -------------GPFEQV----------------YMNVAVTPEEIENNIHSHVEFTPTN 2019
                         G  E +                 +   + P +  ++ ++H E  P+ 
Sbjct: 650  SPDEGGWHDLVAKGYIEYIDTEEEETTMISMTINDLVQARLNPGDAYSDTYTHCEIHPSL 709

Query: 2020 ILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKAN 2199
            IL + A++ PF D NQSPRN YQ  MGKQ MG   T    R D   Y L   Q P+V   
Sbjct: 710  ILGVCASIIPFPDHNQSPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTR 769

Query: 2200 LYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQSR 2379
              +       P G+NAIVA+  Y+GY+ +D++I+N+S+ +RGF     +++ +    + +
Sbjct: 770  AMEHLHFRQLPAGINAIVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYR---DEEK 826

Query: 2380 RRGDPITQHFGFGSDEWPEAWK----EKLDADGLPLIGVKVEEGDPIVAY-----YDDTL 2532
            + G  + + FG          +    +KLD DGL   G +V   D I+        DD  
Sbjct: 827  KMGTLVKEDFGRPDRASTMGMRHGSYDKLDDDGLAPPGTRVSGEDVIIGKTTPISQDDAQ 886

Query: 2533 GKTKVKTY--HS-----SEPAYIEEVKLLGDDSNEQEGQQITIKYRITRQPLIGDKFSSR 2691
            G+    T   HS     SE   +++V L    +N    + + ++ R  R P IGDKFSSR
Sbjct: 887  GQASRYTRKDHSTSLRHSETGMVDQVLLT---TNADGLRFVKVRVRSVRIPQIGDKFSSR 943

Query: 2692 HGQKGVCSRKWPQIDMPFTESGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQD 2871
            HGQKG     + Q DMP+T  G+ PD+I+NPHA PSRMTIG  +E + GK  A  G   D
Sbjct: 944  HGQKGTVGMTYTQEDMPWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGD 1003

Query: 2872 STPWKFNEQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMV 3051
            +TP+     D   D   + L K GY   G E MY+G TG  L   I++G  YYQRL+HMV
Sbjct: 1004 ATPFT----DVTVDNISKALHKCGYQMRGFETMYNGHTGRRLSAMIFLGPTYYQRLKHMV 1059

Query: 3052 NDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQ 3231
            +DK   R  GPV  LT QP +GR R GG+R GEMERD +I HG +  L++RL + SD  +
Sbjct: 1060 DDKIHSRGRGPVQILTRQPAEGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYR 1119

Query: 3232 TPVCRSCGSILTTQTSVPRIGSMASIRCRRCAVGLDKYEGYAADSDIWEDGHGKKFVGGD 3411
              VC  CG I              S  CR C                             
Sbjct: 1120 VHVCERCGLIAIANL------KKNSFECRGCK-------------------------NKT 1148

Query: 3412 DTTTVAIPFVLKYLDSELSAMGIKMR 3489
            D   V IP+  K L  EL AM I  R
Sbjct: 1149 DIVQVHIPYACKLLFQELMAMAIAPR 1174


>P31814|RPOB|RPOB_THECE (SP: Thermococcus celer) DNA-directed RNA
            polymerase subunit B (EC 2.7.7.6).
          Length = 1122

 Score =  402 bits (1034), Expect = e-110
 Identities = 328/1120 (29%), Positives = 526/1120 (46%), Gaps = 57/1120 (5%)
 Frame = +1

Query: 73   MDSYPLLKDAVAPHVGSFNALMDGPDGGLLNLAVKDIGSKTIFDTPETSGRLGNKLKIRV 252
            M++Y   K  V  H+ S+NA +D    G+  +  +  G K   D P+         +++ 
Sbjct: 20   MEAYWKEKGLVRQHLDSYNAFIDH---GMQEVIDEFGGVKP--DIPD--------FEVKF 66

Query: 253  DSVQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVND-EEEVLEVREAG 429
              V+L +P     +     +  +P + R R +TY + + L +   VN   +E +EVR  G
Sbjct: 67   GKVRLGEPEF--QEAQGQRKPLYPMDARIRNLTYSAPIYLELIPVVNGVSQEAVEVR-IG 123

Query: 430  QIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLI--------RMLIVQRR 585
            ++PIMLKS  C L  LS  +L++  E+  + GGYFIVNG E++I           +V+R 
Sbjct: 124  ELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIVNGSERVIVSIEDLAPNKTLVERD 183

Query: 586  NHPMAIIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFLV 765
                 II   F  R        ++ R          + + Y+   NV            V
Sbjct: 184  ERQNRIIAKCFSYRHGYRALITVERRK---------DGILYVKLPNVPRP---------V 225

Query: 766  PVVMILKALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLYSQQETLAYLGDK 945
              V +++AL   +DREI + +  +      L D LE         ++ +Q+E L Y+G  
Sbjct: 226  KFVYVMRALGLLSDREIVEAVSDDPRIQHVLFDNLE------DASDVTTQEEALDYIG-- 277

Query: 946  FRVVFGASPDMSDIEVGKEVLKRIVLVHL----PNNADKFRMLLFMIRKLYSLVAGDCAP 1113
             ++     P    +   + ++   +L H+     +   K   L  M  ++  L  G    
Sbjct: 278  -KLSLPGQPKEYRLRRAQNIIDNNLLPHMGVEEKDRKAKAYYLGMMALRVLELSLGLRGE 336

Query: 1114 DNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINR-GVGINFDDRKYMTRVF 1290
            D+ D   ++ + L G L   + +    + +++++ Q+     R G    F++ +   R  
Sbjct: 337  DDKDHYANKRLKLAGDLLMDLFRVAFGQLVKDMQYQMTKTYQRKGERYTFENIQRFVRNS 396

Query: 1291 LRINENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFFA 1470
            +R  + + +++++ L+TG+            +G + + ++ N+   +SH R V       
Sbjct: 397  IR-PDVLSERIEHALATGSWPGGR-------TGVSQLLDRTNYISTLSHLRRV-TSPLSR 447

Query: 1471 ELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEASDVSQVPKALTQLGV 1650
            E      R L    WG +CP  TP+G  CGL+ +L+   +I T   +  +V + L +LGV
Sbjct: 448  EQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMSQITTGVPE-EEVREYLERLGV 506

Query: 1651 LPADSFAAGPNLCCVQLDGKIVGWTTHEQGRI--VADTLRYWKVNGGHGLPL----DLEI 1812
            +P +     P+L  + L+G +VG     +G +  +    R  K++    + L    D++ 
Sbjct: 507  VPIEERRPNPDLWRLYLNGVLVGTVEDGEGFVNRIRTDRRSGKISDIINVALYQDEDVKE 566

Query: 1813 GYV-PPSNKGQYPGLYIFGGHSRMMR----PVKYLPLDKEDIVGPFEQVYMN-------- 1953
             YV     + + P + +  G  ++ R     +K   L   D+V      Y++        
Sbjct: 567  IYVNSDDGRVRRPLIIVENGRPKLTREHVEAIKNGSLTWSDLVKMGVIEYLDAEEEENAL 626

Query: 1954 VAVTPEEIENNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTAL 2133
            VA  P E+    H+H+E  P  IL I A+L P+ + N  PRN Y   M KQ++G      
Sbjct: 627  VATWPWEVTEE-HTHLELMPAAILGIPASLVPYPEHNARPRNTYGAGMAKQSLGLGWANF 685

Query: 2134 VHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKSA 2313
              R D + + +   Q P+V + +    G +  P G N +VAV+SY GY+M+DA+I+NK++
Sbjct: 686  RIRVDTRGHLMHYPQVPLVNSRIMKAVGFEERPAGQNFVVAVLSYAGYNMEDAIIMNKAS 745

Query: 2314 DERGFGYGTVYKT----EKVDLSQSRRR---GDPITQHFGFGSDEWPEAWKEKLDADGLP 2472
             ERG    T ++T    EK  L     R    DP  Q +        E +   LD DG+ 
Sbjct: 746  IERGLARSTFFRTYEAEEKRYLGGQTDRFEIPDPTIQGY------LGERYYRHLDEDGII 799

Query: 2473 LIGVKVEEGDPIVA------YYDDTLG---------KTKVKTYHSSEPAYIEEVKL--LG 2601
                KV   D +V       + ++  G         +    T   SE   +++V +   G
Sbjct: 800  FPESKVNGKDVLVGRTSPPRFLEEQSGLGGIILQERRETSLTVRPSETGVVDKVIITETG 859

Query: 2602 DDSNEQEGQQITIKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVIIN 2781
            D +     + + +  R  R P  GDKF+SRHGQKGV     PQ DMP+TESG+ PD+I+N
Sbjct: 860  DGT-----KLVKVTTRDLRIPEFGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVN 914

Query: 2782 PHAFPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFNEQDTPADYFGEQLLKAGYNYHGN 2961
            PH  PSRMT+G  +E++ GK  +L G   D T +       P +   ++L + G+ + G 
Sbjct: 915  PHGIPSRMTVGQLIEAIGGKVASLKGRRVDGTAF----IGEPEEKLRKELEELGFKHSGR 970

Query: 2962 EPMYSGATGEELRCDIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGIR 3141
            E MY G TG  L  D+++G +YYQRL HMV DK   RS GPV  LT QP +GR R GG+R
Sbjct: 971  EVMYDGITGRRLEADVFVGVIYYQRLHHMVADKMHARSRGPVQVLTKQPTEGRAREGGLR 1030

Query: 3142 VGEMERDALIGHGTSFLLQDRLLNCSDYTQTPVCRSCGSI 3261
             GEMERD LIGHG + LL +RLL  SD T+  VC +CG I
Sbjct: 1031 FGEMERDVLIGHGAAMLLIERLLEESDKTEVWVCENCGHI 1070


>O59226|PH1546|O59226 (TrEMBL: Pyrococcus horikoshii) 1117AA long
            hypothetical DNA-directed RNA polymerase subunit B.
          Length = 1117

 Score =  402 bits (1032), Expect = e-110
 Identities = 332/1113 (29%), Positives = 531/1113 (47%), Gaps = 50/1113 (4%)
 Frame = +1

Query: 73   MDSYPLLKDAVAPHVGSFNALMDGPDGGLLNLAVKDIGSKTIFDTPETSGRLGNKLKIRV 252
            M+SY   K  V  H+ S+NA ++    GL  +  +  G K   D P+   + G   KIRV
Sbjct: 18   MESYWEEKGLVRQHLDSYNAFIER---GLQEVVDEFGGIKP--DIPDFEVKFG---KIRV 69

Query: 253  DSVQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVND-EEEVLEVREAG 429
               +  +P           +  +P + R R +TY + L L +   +   E++ +EVR  G
Sbjct: 70   GEPEFQEPH-------GQRKPLYPMDARIRNLTYSAPLYLEMIPVIRGIEQDPVEVR-IG 121

Query: 430  QIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRML--------IVQRR 585
            ++PIMLKS  C L  LS  +L++  E+  + GGYFI+NG E++I  +        +V++ 
Sbjct: 122  ELPIMLKSKACRLYGLSDEELIKLGEDPKDPGGYFIINGSERVIVSIEDIAPNRTLVEKD 181

Query: 586  NHPMAIIRPSFGNRGASYTKFGIQIRSVRPDQTSQTNVLHYLNDGNVTFRFSWRKNEFLV 765
                  I   F  R           R++   +  +  +L Y+   NV            V
Sbjct: 182  ERQEKYIAKVFSYRHG--------YRALVTVERKKDGIL-YVGIPNVPRP---------V 223

Query: 766  PVVMILKALIETNDREIFDGIVGNDTE-NSFLTDRLELLLRTYKTYNLYSQQETLAYLGD 942
              V +++AL    D++I D  VGND E    L D LE         ++ +QQE L Y+G 
Sbjct: 224  KFVYVMRALGLERDKDIVDA-VGNDPEVQQILFDNLE------DASDITTQQEALEYIG- 275

Query: 943  KFRVVFGASPDMSDIEVGKEVLKRIVLVHLP-NNADKFRMLLF---MIRKLYSLVAGDCA 1110
              ++V         ++  + V+   +L H+     D+ R   +   M  K+  L  G   
Sbjct: 276  --KLVAPGQAREYRLKRAEYVIDNNLLPHMGVTPEDRIRKAYYLGMMALKVIELSLGKRD 333

Query: 1111 PDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINR-GVGINFDDRKYMTRV 1287
             D+ D   ++ + L G L   + +    + +++I+ Q+     R G    F +     R 
Sbjct: 334  EDDKDHYANKRLRLAGDLLKDLFRVAFSQLIKDIQYQMTKTYQRRGEKYVFSNIHRFIRN 393

Query: 1288 FLRINENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRFISHFRMVHRGSFF 1467
             +R  + + +++++ L+TG             +G + + ++ N+   +SH R V      
Sbjct: 394  SIR-PDVLTERIEHALATGAWPGGR-------TGVSQLLDRTNYVSTLSHLRRV-TSPLD 444

Query: 1468 AELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEASDVSQVPKALTQLG 1647
             E      R L    WG +CP  TP+G  CGL+ +L+   +I T   +  +V + L  LG
Sbjct: 445  REQPHFEARDLHGTHWGRICPTETPEGPNCGLVKNLALMAQITTAVPE-EEVREYLMSLG 503

Query: 1648 VLPADSFAAGPNLCCVQLDGKIVGWTTHEQGRIVADTLRYWKVNGGHGLPLDL------- 1806
            ++P +     P L  V L+G ++G  T E G+ + + ++  + +G     +++       
Sbjct: 504  IVPIEVRRPSPELWRVYLNGVLIG--TVEDGKALVERIKKDRRSGKISDIINVAYYEDVK 561

Query: 1807 EIGYVPPSNKGQYPGLYIFGGHSRM----MRPVKYLPLDKEDIVGPFEQVYMN------- 1953
            E+       + + P + +  G  ++    ++ +K   L   D+V      Y++       
Sbjct: 562  EVYVNSDDGRVRRPLIIVENGVPKLTKEHVQAIKEGRLKWSDLVRMGVIEYLDAEEEENA 621

Query: 1954 -VAVTPEEIENNIHSHVEFTPTNILSILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTA 2130
             VA+ P E+    H+H+E  P  IL + A+L P+ + N +PRN Y   M KQ++G     
Sbjct: 622  YVAMWPWEVTKE-HTHLELMPAAILGLPASLIPYPEHNAAPRNTYGAGMAKQSLGLGWAN 680

Query: 2131 LVHRSDNKLYRLQTGQTPIVKANLYDDYGMDNFPNGMNAIVAVISYTGYDMDDAMIINKS 2310
               R D + + L   Q P+V + +    G ++ P G N +VAV++Y GY+M+DA+IINK+
Sbjct: 681  FRIRVDTRGHLLHYPQIPLVNSRIMKAVGYEDRPAGQNFVVAVLAYHGYNMEDAIIINKA 740

Query: 2311 ADERGFGYGTVYKTEKVDLS-----QSRRRGDPITQHFGFGSDEWPEAWKEKLDADGLPL 2475
            + ERG    T ++T + +       Q+ R   P     G+      E +   LD DGL  
Sbjct: 741  SIERGLARSTFFRTYEAEEKKYLGGQTDRFEIPAPTVRGYRG----EKYYRHLDEDGLIF 796

Query: 2476 IGVKVEEGDPIVA-------YYDDTLGKTKVKTYHSSEPAYIEEVKLLGDD---SNEQEG 2625
               KVE  D ++          +  LG   ++    +  A     K + D    +   +G
Sbjct: 797  PESKVEGKDVLIGRTSPPRFLEERGLGAVSLQERRETSVAVRPSEKGIVDKVIITETGDG 856

Query: 2626 QQIT-IKYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVIINPHAFPSR 2802
             ++  +  R  R P IGDKF+SRHGQKGV     PQ DMP+TESG+ PD+I+NPH  PSR
Sbjct: 857  TKLVKVTVRDLRIPEIGDKFASRHGQKGVIGLIVPQEDMPWTESGIVPDLIVNPHGIPSR 916

Query: 2803 MTIGMFVESLAGKAGALHGIAQDSTPWKFNEQDTPADYFGEQLLKAGYNYHGNEPMYSGA 2982
            MT+G  +E++ GK  AL G   D T +       P +   ++L + G+ + G E MY G 
Sbjct: 917  MTVGQLLEAIGGKVAALKGRRVDGTAFI----GEPEEKLRKELEELGFKHTGREIMYDGI 972

Query: 2983 TGEELRCDIYIGCVYYQRLRHMVNDKFQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERD 3162
            TG+    DI+IG +YYQRL HMV DK   RS GPV  LT QP +GR R GG+R GEMERD
Sbjct: 973  TGKRFEADIFIGIIYYQRLHHMVADKIHARSRGPVQVLTKQPTEGRAREGGLRFGEMERD 1032

Query: 3163 ALIGHGTSFLLQDRLLNCSDYTQTPVCRSCGSI 3261
             L+GHG + LL +RLL  SD T+  VC +CG I
Sbjct: 1033 VLVGHGAAMLLIERLLEESDKTEVWVCENCGHI 1065


>Q8CFI7||Q8CFI7 (TrEMBL: Mus musculus (Mouse)) Polymerase (RNA) II
            (DNA directed) polypeptide B, 140kDa.
          Length = 1167

 Score =  401 bits (1031), Expect = e-110
 Identities = 336/1108 (30%), Positives = 525/1108 (47%), Gaps = 81/1108 (7%)
 Frame = +1

Query: 244  IRVDSVQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWSVNDE-EEVLEVR 420
            ++ + + L+KP+    D         P+E R R +TY + L +++T +V  E EE L+ +
Sbjct: 79   LKFEQIYLSKPTHWERD--GAPSPMMPNEARLRNLTYSAPLYVDITKTVIKEGEEQLQTQ 136

Query: 421  EA----GQIPIMLKSNRCHLEKLSPNQLVEAKEESDELGGYFIVNGIEKLIRMLIVQRRN 588
                  G+IPIML+S  C L  L+   L E  E   + GGYFI+NG EK+   LI Q + 
Sbjct: 137  HQKTFIGKIPIMLRSTYCLLNGLTDRDLCELNECPLDPGGYFIINGSEKV---LIAQEKM 193

Query: 589  HPMAIIRPSFGNRGASYTKFGIQIRSV-----RPDQTSQTNVLHYLNDG--------NVT 729
                +    F  + + Y   G + RS      RP  T   ++L     G         + 
Sbjct: 194  ATNTVY--VFAKKDSKYAYTG-ECRSCLENSSRPTSTIWVSMLARGGQGAKKSAIGQRIV 250

Query: 730  FRFSWRKNEFLVPVVMILKALIETNDREIFDGIVGNDTENSFLTDRLELLLRTYKTYNLY 909
                + K E  VP++++ +AL   +DR+I + I+  D E+  + + ++  L   + + + 
Sbjct: 251  ATLPYIKQE--VPIIIVFRALGFVSDRDILEHII-YDFEDPEMMEMVKPSLD--EAFVIQ 305

Query: 910  SQQETLAYLGDKFRVVFGASPDMSD---IEVGKEVLKRIVLVHLPNN----ADKFRMLLF 1068
             Q   L ++G +     GA P ++    I+  KEVL++ +L H+  +      K   L +
Sbjct: 306  EQNVALNFIGSR-----GAKPGVTKEKRIKYAKEVLQKEMLPHVGVSDFCETKKAYFLGY 360

Query: 1069 MIRKLYSLVAGDCAPDNPDATQHQEVLLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRGV 1248
            M+ +L     G    D+ D   ++ + L G L   + +   +  L+ +++  Q  I+RG 
Sbjct: 361  MVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEVRIYAQKFIDRGK 420

Query: 1249 GINFDDRKYMTRVFLRINENIGQKLQYFLSTGNLVSQSGLDLQQVSGYTVVAEKINFYRF 1428
              N +     TR+       I   L+Y L+TGN   Q     Q  +G + V  ++ F   
Sbjct: 421  DFNLE-LAIKTRI-------ISDGLKYSLATGNWGDQKKAH-QARAGVSQVLNRLTFAST 471

Query: 1429 ISHFRMVHRGSFFAELKTTTVRKLLPESWGFLCPVHTPDGSPCGLLNHLSHKCKIATEAS 1608
            +SH R ++      + K    R+L    WG +CP  TP+G   GL+ +L+    I+   S
Sbjct: 472  LSHLRRLN-SPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISV-GS 529

Query: 1609 DVSQVPKALTQLGV--LPADSFAAGPNLCCVQLDGKIVGWTTHEQGRIVADTLRYWKVNG 1782
              S + + L +  +  L   S AA  +   + ++G  VG   H+    + +TLR  +   
Sbjct: 530  QPSPILEFLEEWSMENLEEISPAAIADATKIFVNGCWVG--IHKDPEQLMNTLRKLRRQ- 586

Query: 1783 GHGLPLDLEIGYVPPSNKGQYPGLYIFGGHSRMMRPVKYLPLDK---------------- 1914
                 +D+ +  V      +   + I+    R+ RP+  +   K                
Sbjct: 587  -----MDIIVSEVSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKKRHIDQLKEREY 641

Query: 1915 -----EDIVGP--------FEQVYMNVAVTPEEIEN------NIHSHVEFTPTNILSILA 2037
                 +D+V           E+  + +A+TP++++       + ++H E  P+ IL + A
Sbjct: 642  NNYSWQDLVASGVVEYIDTLEEETVMLAMTPDDLQEKEVAYCSTYTHCEIHPSMILGVCA 701

Query: 2038 NLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRLQTGQTPIVKANLYDDYG 2217
            ++ PF D NQSPRN YQ  MGKQ MG   T    R D   + L   Q P+V     +   
Sbjct: 702  SIIPFPDHNQSPRNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLR 761

Query: 2218 MDNFPNGMNAIVAVISYTGYDMDDAMIINKSADERGFGYGTVYKTEKVDLSQSRRRGDPI 2397
                P G+N+IVA+ SYTGY+ +D++I+N+SA +RGF     Y++ K    Q  ++G   
Sbjct: 762  FRELPAGINSIVAIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYK---EQESKKGFDQ 818

Query: 2398 TQHFGFGSDEWPEAWK----EKLDADGLPLIGVKVEEGDPIVAYY------DDTLGKTKV 2547
             + F   + E  +  +    EKLD DGL   GV+V   D I+         +D L  T  
Sbjct: 819  EEVFEKPTRETCQGMRHAIYEKLDDDGLIAPGVRVSGDDVIIGKTVTLPENEDELESTNR 878

Query: 2548 KT--------YHSSEPAYIEEVKLLGDDSNEQEGQQIT-IKYRITRQPLIGDKFSSRHGQ 2700
            +           +SE   +++V +    +  QEG +   I+ R  R P IGDKF+SRHGQ
Sbjct: 879  RYTKRDCSTFLRTSETGIVDQVMV----TLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQ 934

Query: 2701 KGVCSRKWPQIDMPFTESGMQPDVIINPHAFPSRMTIGMFVESLAGKAGALHGIAQDSTP 2880
            KG C  ++ Q DMPFT  G+ PD+IINPHA PSRMTIG  +E L GK  A  G   D+TP
Sbjct: 935  KGTCGIQYRQEDMPFTCEGITPDIIINPHAIPSRMTIGHLIECLQGKVSANKGEIGDATP 994

Query: 2881 WKFNEQDTPADYFGEQLLKAGYNYHGNEPMYSGATGEELRCDIYIGCVYYQRLRHMVNDK 3060
              FN+           L   GY+  GNE +Y+G TG ++   I+IG  YYQRL+HMV+DK
Sbjct: 995  --FNDA-VNVQKISNLLSDYGYHLRGNEVLYNGFTGRKITSQIFIGPTYYQRLKHMVDDK 1051

Query: 3061 FQVRSTGPVNSLTMQPVKGRKRSGGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPV 3240
               R+ GP+  L  QP++GR R GG+R GEMERD  I HG +  L++RL   SD  Q  V
Sbjct: 1052 IHSRARGPIQILNRQPMEGRSRDGGLRFGEMERDCQIAHGAAQFLRERLFEASDPYQVHV 1111

Query: 3241 CRSCGSILTTQTSVPRIGSMASIRCRRC 3324
            C  CG +    T         +  CR C
Sbjct: 1112 CNLCGIMAIANTRT------HTYECRGC 1133


  Database: sptrembl
    Posted date:  Oct 14, 2003  6:47 PM
  Number of letters in database: 339,323,595
  Number of sequences in database:  1,070,300
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,156,519,754
Number of Sequences: 1070300
Number of extensions: 27236103
Number of successful extensions: 74869
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 68211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74111
length of database: 339,323,595
effective HSP length: 133
effective length of database: 196,973,695
effective search space used: 203867774325
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)