BLASTX 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Candida_albicans_chr7-f3-472194-475850-39
         (3654 letters)

Database: sptrembl 
           1,070,300 sequences; 339,323,595 total letters

Searching.................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

P13433|RPO41|RPOM_YEAST (SP: Saccharomyces cerevisiae (Baker's y...   381   e-104
Q8SBD3|RPOT2|Q8SBD3 (TrEMBL: Physcomitrella patens (Moss)) Singl...   320   6e-86
O13993|SPAC26H5.12|RPOM_SCHPO (SP: Schizosaccharomyces pombe (Fi...   320   6e-86
Q8J122||Q8J122 (TrEMBL: Cryptococcus neoformans var. grubii) RPO41.   319   1e-85
Q8L6F8|RPOT2|Q8L6F8 (TrEMBL: Physcomitrella patens (Moss)) RNA p...   319   1e-85
Q8SBD4|RPOT1|Q8SBD4 (TrEMBL: Physcomitrella patens (Moss)) Singl...   319   1e-85
Q8J0Z4||Q8J0Z4 (TrEMBL: Cryptococcus neoformans var. grubii) RPO41.   319   2e-85
Q8J0W4||Q8J0W4 (TrEMBL: Cryptococcus neoformans var. neoformans)...   318   2e-85
Q8J0Y5||Q8J0Y5 (TrEMBL: Cryptococcus neoformans var. neoformans)...   318   2e-85
Q8L6F9|RPOT1|Q8L6F9 (TrEMBL: Physcomitrella patens (Moss)) RNA p...   318   3e-85
P92969|RPOMT|RPOM_ARATH (SP: Arabidopsis thaliana (Mouse-ear cre...   316   1e-84
Q8L4F8|RPOT3|RPO3_NICSY (SP: Nicotiana tabacum (Common tobacco))...   314   4e-84
Q8L6J7|RPOT2-TOM|Q8L6J7 (TrEMBL: Nicotiana tabacum (Common tobac...   314   6e-84
Q8L6K2|RPOT1-TOM|Q8L6K2 (TrEMBL: Nicotiana tabacum (Common tobac...   313   1e-83
Q8L6J5|NICTARPOT1-TOM|Q8L6J5 (TrEMBL: Nicotiana tabacum (Common ...   311   4e-83
Q41524||Q41524 (TrEMBL: Triticum aestivum (Wheat)) Single-subuni...   311   4e-83
Q93Y94|RPOT1|RPO1_NICSY (SP: Nicotiana sylvestris (Wood tobacco)...   309   1e-82
P38671|CYT-5|RPOM_NEUCR (SP: Neurospora crassa) DNA-directed RNA...   309   1e-82
Q8VWF8|RPOT2|RPO2_NICSY (SP: Nicotiana sylvestris (Wood tobacco)...   307   5e-82
Q84LK6|RPOT1|Q84LK6 (TrEMBL: Oryza sativa (japonica cultivar-gro...   306   9e-82
Q95NZ8|RPMA|Q95NZ8 (TrEMBL: Dictyostelium discoideum (Slime mold...   305   2e-81
Q8L6J6|RPOT3-TOM|Q8L6J6 (TrEMBL: Nicotiana tabacum (Common tobac...   305   2e-81
Q9MQV1||Q9MQV1 (TrEMBL: Triticum aestivum (Wheat)) Single-subuni...   305   3e-81
Q9LFV6|F14F8_80|Q9LFV6 (TrEMBL: Arabidopsis thaliana (Mouse-ear ...   304   6e-81
O23644||O23644 (TrEMBL: Arabidopsis thaliana (Mouse-ear cress)) ...   303   8e-81
Q84LK5|RPOT2|Q84LK5 (TrEMBL: Oryza sativa (japonica cultivar-gro...   303   1e-80
Q9PTG7|MTRPO|Q9PTG7 (TrEMBL: Xenopus laevis (African clawed frog...   302   2e-80
O24600|RPOPT|RPOT_ARATH (SP: Arabidopsis thaliana (Mouse-ear cre...   301   5e-80
O82725|RPOT|O82725 (TrEMBL: Zea mays (Maize)) DNA directed RNA p...   294   6e-78
Q9SYW4|RPOT2|Q9SYW4 (TrEMBL: Zea mays (Maize)) T7-like RNA polym...   293   8e-78

>P13433|RPO41|RPOM_YEAST (SP: Saccharomyces cerevisiae (Baker's
            yeast)) DNA-directed RNA polymerase, mitochondrial
            precursor (EC 2.7.7.6).
          Length = 1351

 Score =  381 bits (979), Expect = e-104
 Identities = 242/755 (32%), Positives = 380/755 (50%), Gaps = 45/755 (5%)
 Frame = +1

Query: 1525 IVKMHPYIELKLQSLKL--GTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSI-QV 1695
            ++K+H  +  +L   +L        LPML  PKPWVN +SGGY   +++ + T DS  QV
Sbjct: 648  VLKIHKTLIRQLNGERLIASVQPQLLPMLVEPKPWVNWRSGGYHYTQSTLLRTKDSPEQV 707

Query: 1696 ELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLMGNPDGFLSIP--------- 1848
              L  A   G +D  Y  L+ +G T W +N  + DV +++    +GFL IP         
Sbjct: 708  AYLKAASDNGDIDRVYDGLNVLGRTPWTVNRKVFDVVSQVWNKGEGFLDIPGAQDEMVLP 767

Query: 1849 ---PLVPDETLPQKTKTELKSLRITF--------EIMNKLANAFGENGDLLYHCYSLDFR 1995
               P   D ++ +  K ++K++   F        +   KL  A    G+ LY  ++LDFR
Sbjct: 768  PAPPKNSDPSILRAWKLQVKTIANKFSSDRSNRCDTNYKLEIARAFLGEKLYFPHNLDFR 827

Query: 1996 GRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFG-----QKNCLEFY 2157
            GR YP SP   H G D++R L +FW+ + LGP+G  W+K  L++LFG      K+ + F 
Sbjct: 828  GRAYPLSPHFNHLGNDMSRGLLIFWHGKKLGPSGLKWLKIHLSNLFGFDKLPLKDRVAFT 887

Query: 2158 EENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGKIEDYKCRLPIH 2337
            E +  +I DSA   +TG +WW  ADKP+ ALA CFE+ ++    M     E++    P+H
Sbjct: 888  ESHLQDIKDSAEKSLTGDRWWTTADKPWQALATCFELNEV----MKMDNPEEFISHQPVH 943

Query: 2338 QDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDVYTKVLEIVKKKIEQDILEQNLGTVN 2517
            QDG+CNGLQHYA L  D  G   VNL+  +  QDVY  V  +V+K++E   +    G   
Sbjct: 944  QDGTCNGLQHYAALGGDVEGATQVNLVPSDKPQDVYAHVARLVQKRLE---IAAEKGD-- 998

Query: 2518 LETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSKTTFSNET 2697
             E AK     + RK+VK+ VMT VYGVT  GA+ QI + +  I +D + +          
Sbjct: 999  -ENAKILKDKITRKVVKQTVMTNVYGVTYVGATFQIAKQLSPIFDDRKES---------- 1047

Query: 2698 LHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQNTKRILTSYNIKTIDHLLNNN 2877
                    L  + YL K +  +I ELF  A  I+ WL ++ KRI  S  +   +    N 
Sbjct: 1048 --------LDFSKYLTKHVFSAIRELFHSAHLIQDWLGESAKRISKSIRLDVDEKSFKNG 1099

Query: 2878 PSSFETIFTTPMSFFPMSWISPCGLPVIQAYRKIPTSRFNGAIGKTTWNNSNKLSPMDRR 3057
                      P     + W +P GLP++Q YR+    +    +     ++   ++P++ R
Sbjct: 1100 --------NKPDFMSSVIWTTPLGLPIVQPYREESKKQVETNLQTVFISDPFAVNPVNAR 1151

Query: 3058 KHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSYWTHPNNVEKLSKILREQFVE 3237
            + + G+ PNFIHSLDA+H+ ++     K GL F+++HDSYWTH ++++ ++ +LREQF++
Sbjct: 1152 RQKAGLPPNFIHSLDASHMLLSAAECGKQGLDFASVHDSYWTHASDIDTMNVVLREQFIK 1211

Query: 3238 LYSMDYLKYVRQDFINQVKNSYQLVYFKKKDYPGLANKIAEIRKH--------------- 3372
            L+ +D +  ++++F  + KN  ++   K+     LA KI  IRK                
Sbjct: 1212 LHEVDLVLRLKEEFDQRYKNYVKIGKLKRS--TDLAQKIIRIRKDLSRKLGRSTTLADEI 1269

Query: 3373 YPERKKPHKLAFELREMTEQGEEHIMRKLYQRYKPRVFHIVSD-KCYEYRNDTVVQPEPK 3549
            Y E+K+   L   L E    GE+ +           +F  ++D    E  N         
Sbjct: 1270 YFEKKRQELLNSPLIEDRNVGEKMVT-------TVSLFEDITDLDALELENG------GD 1316

Query: 3550 CKGMMEIFVPVLIINVPPKGNLDISKVLDSPYFFS 3654
                M + +P+ +  +PPKG+ D++ + +S YFFS
Sbjct: 1317 ENSGMSVLLPLRLPEIPPKGDFDVTVLRNSQYFFS 1351


>Q8SBD3|RPOT2|Q8SBD3 (TrEMBL: Physcomitrella patens (Moss))
            Single-subunit RNA polymerase.
          Length = 1065

 Score =  320 bits (821), Expect = 6e-86
 Identities = 201/621 (32%), Positives = 306/621 (49%), Gaps = 28/621 (4%)
 Frame = +1

Query: 1510 NKTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSI 1689
            N+ Y +++    +  ++        + Y+PML  P PW     GGYL +K+S + T  + 
Sbjct: 463  NRIYGVIECDQLVLAEIDQSVKHMVMPYMPMLVKPLPWKGFNEGGYLYLKSSIMRTQGAK 522

Query: 1690 QVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLMGNPDGFLSIP------- 1848
            +  +      R  +      L+ +G T W +N  +L+V  KL     G   +        
Sbjct: 523  EQRMAVIDTPRKHMKVVVEALNVLGETGWRVNKRVLEVVEKLWKAGGGIADLVEADDVPI 582

Query: 1849 PLVPDET-------------LPQKTKTELKSLRITFEIMNKLANAFGENGDLLYHCYSLD 1989
            P  PD +               ++T +E  SLR   E+   +A    +  +  Y+ ++LD
Sbjct: 583  PERPDTSDKEVWHKWKVAVSQAKRTNSERHSLRCDTELKLGVAKKLIDE-EAFYYPHNLD 641

Query: 1990 FRGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFGQK-------NC 2145
            FRGR YP  P L H G DL R L +F   +PLGP+G  WIK QLA+L+G         + 
Sbjct: 642  FRGRAYPMHPHLNHLGNDLCRGLLIFADGKPLGPSGLRWIKIQLANLYGGSVGKMSFDDR 701

Query: 2146 LEFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGKIEDYKCR 2325
              F E+  + I+DSA  P+ G + W+KA+ PF  LA C +++  L    + G  E +   
Sbjct: 702  AAFAEDRMEEILDSAERPLDGSRLWLKAEDPFQFLAACIDLRDAL----ASGNPETFVSH 757

Query: 2326 LPIHQDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDVYTKVLEIVKKKIEQDILEQNL 2505
            LP+HQDGSCNGLQHYA L  D  G  +VNLI  +   DVY+ + E VK  +E+D L+  L
Sbjct: 758  LPVHQDGSCNGLQHYAALGRDRIGAESVNLIAGDKPADVYSGIAERVKIIMEKDALKNPL 817

Query: 2506 GTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSKTTF 2685
             + N  +A+     ++RKLVK+ VMT+VYGVT  GA  QI+  +KE          ++  
Sbjct: 818  TSRNAASARLLQGQIDRKLVKQTVMTSVYGVTFIGARMQILNRLKE----------RSPI 867

Query: 2686 SNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQNTKRILTSYNIKTIDHL 2865
            + + +   ++       Y AK  LD++ E+F  A+ I  WL    K I  + +       
Sbjct: 868  AVDPVDTYRA-----ACYAAKVTLDALGEMFKEARCIMSWLGDCAKIIAAAGH------- 915

Query: 2866 LNNNPSSFETIFTTPMSFFPMSWISPCGLPVIQAYRKIPTSRFNGAIGKTTWNNSNKLSP 3045
                                + W SP GLP++Q YRK        ++      N++   P
Sbjct: 916  -------------------TVRWTSPLGLPIVQPYRKHSRHLVKTSLQVLALRNTDDNHP 956

Query: 3046 MDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSYWTHPNNVEKLSKILRE 3225
            +   +      PNF+HSLD++H+ MT  + +KAGLTF+ +HDSYWTH  +VE ++ ILR+
Sbjct: 957  VLASRQRSAFPPNFVHSLDSSHMMMTALACSKAGLTFAGVHDSYWTHAGDVENMNVILRK 1016

Query: 3226 QFVELYSMDYLKYVRQDFINQ 3288
             FV+LY    L+ +  DF  Q
Sbjct: 1017 NFVKLYKQPILENLLLDFQTQ 1037


>O13993|SPAC26H5.12|RPOM_SCHPO (SP: Schizosaccharomyces pombe (Fission
            yeast)) DNA-directed RNA polymerase, mitochondrial
            precursor (EC 2.7.7.6).
          Length = 1120

 Score =  320 bits (821), Expect = 6e-86
 Identities = 209/648 (32%), Positives = 307/648 (47%), Gaps = 29/648 (4%)
 Frame = +1

Query: 1438 ISSGGNDDEYLAFCKETKRITNTKNKTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPK 1617
            +S+GG   + +A    T + +N +    I+  +  Y  L     K   H   LPML  PK
Sbjct: 463  LSTGGILKQEVAAFVHTYQYSNGRKVGMIVPHVEFYKLLSRDIEKPHLHPQLLPMLVTPK 522

Query: 1618 PWVNPQSGGYLTIKTSFVSTNDSI-QVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLM 1794
            PW +   GGY   +   V    ++ QV+ L +A   GQLD  +  +  +G  +W IN  +
Sbjct: 523  PWTSWIDGGYYYSRQPLVRLKGALEQVDYLMKASENGQLDELFKAVSSLGKVSWRINQRL 582

Query: 1795 LDVFNKLMGNPDGFLSIPPLVPDETLPQKTKTELK----------------------SLR 1908
             +V  ++  + + FLSIPP      +P   K  +                       S R
Sbjct: 583  FNVLIRIWNSGEKFLSIPPREVKCDMPPYPKNSINPRDKVIWHTRRKELAALKTGAHSQR 642

Query: 1909 ITFEIMNKLANAFGENGDLLYHCYSLDFRGRIYPFSP-LTHYGGDLARSLFMFWYSEPLG 2085
              F    ++A AF    +  Y  +SLDFRGR YP S  L H   D+ R L  F   +PLG
Sbjct: 643  CDFNYKLEIARAF--LNEKFYFPHSLDFRGRAYPLSSHLHHVSNDVCRGLLEFSTGKPLG 700

Query: 2086 PNGFYWIKYQLASLFG--QKNCLE---FYEENYDNIIDSARNPMTGKKWWMKADKPFSAL 2250
            P G  W+K  LA+LFG  +K+      F ++N   + DSA  P+ G KWW KAD PF AL
Sbjct: 701  PKGLNWLKVHLANLFGISKKDFATRQAFVDDNMQEVFDSADRPLDGNKWWSKADDPFQAL 760

Query: 2251 AVCFEIKKILDYRMSGGKIEDYKCRLPIHQDGSCNGLQHYAGLAADETGGAAVNLIRLET 2430
            A CFEI + +      G  E Y   +PI QDG+CNGLQHYA L  D  G   VNL   + 
Sbjct: 761  AACFEIAEAV----RSGDHESYISHIPIQQDGTCNGLQHYAALGGDIEGAKQVNLWPSDH 816

Query: 2431 KQDVYTKVLEIVKKKIEQDILEQNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAG 2610
              DVY  V EIV+  +++D           E A F    + R +VK  VMT VYGVT  G
Sbjct: 817  PSDVYEAVAEIVRGFLKKD------AEAGDEMANFLKDKVTRSVVKPTVMTNVYGVTYVG 870

Query: 2611 ASSQIMQTIKEIVEDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAK 2790
            A  QI + ++ I               + + KLK       +YL KK+ +++  LF  A 
Sbjct: 871  ARKQISEKLENI---------------DGMEKLKVADYA--NYLTKKVFEALRSLFTQAH 913

Query: 2791 QIEKWLLQNTKRILTSYNIKTIDHLLNNNPSSFETIFTTPMSFFPMSWISPCGLPVIQAY 2970
            +I+ WL      I  S     I   + +  +             P+ W +   LP++Q Y
Sbjct: 914  EIQDWLSACCNLITHSLPADYIKEGIKDELT-------------PVVWTTLLNLPIVQPY 960

Query: 2971 RKIPTSRFNGAIGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGL 3150
            R   + +    +        ++ + +   K      PNFIHSLDA H+FMTC   ++  +
Sbjct: 961  RNYKSRQIRTNLQTVFIEERDRTATVQPHKQATAFPPNFIHSLDATHMFMTCLKCSEQNI 1020

Query: 3151 TFSAIHDSYWTHPNNVEKLSKILREQFVELYSMDYLKYVRQDFINQVK 3294
             F+A+HDSYWTH  +V++++ +LRE FV L+S + ++ ++Q+F  + K
Sbjct: 1021 NFAAVHDSYWTHACDVDQMNSLLREAFVLLHSNNIMERLKQEFEERYK 1068



 Score = 36.2 bits (82), Expect = 3.0
 Identities = 23/71 (32%), Positives = 37/71 (52%)
 Frame = +1

Query: 3442 HIMRKLYQRYKPRVFHIVSDKCYEYRNDTVVQPEPKCKGMMEIFVPVLIINVPPKGNLDI 3621
            +IM +L Q ++ R    +  K     ND     + K K   + ++P+    +P +G LD+
Sbjct: 1054 NIMERLKQEFEERYKGFLVSKKAIKANDE----DLKAKFGNKSYIPLEFPPLPARGALDL 1109

Query: 3622 SKVLDSPYFFS 3654
             KVL+S YFFS
Sbjct: 1110 KKVLESKYFFS 1120


>Q8J122||Q8J122 (TrEMBL: Cryptococcus neoformans var. grubii) RPO41.
          Length = 1200

 Score =  319 bits (818), Expect = 1e-85
 Identities = 204/635 (32%), Positives = 311/635 (48%), Gaps = 41/635 (6%)
 Frame = +1

Query: 1507 KNKTYIIVKMHPYIELKLQSLKLGTHLH--YLPMLHPPKPWVNPQSGGYLTIKTSFVSTN 1680
            + K   ++K++P +  +L    +G  +H  +LPML  P+PW     GGYL      +   
Sbjct: 458  RGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYK 517

Query: 1681 DSI-QVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLMGNPDGFLSIPPLV 1857
            +S+ Q + L  A   G L+  +  LD + +T W +N  + DV  +     +    IPP  
Sbjct: 518  ESLEQQKWLKAASEEGHLEPVFHGLDVLSSTPWRVNRRVFDVVLESWNRGEPIADIPPSE 577

Query: 1858 ----------PDET---------LPQKTKTELKSLR------ITFEIMNKLANAFGENGD 1962
                      PD +           +KTK  L   R        F    ++A ++ +  D
Sbjct: 578  DKAHYEFPEKPDSSDQDPQMRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLK--D 635

Query: 1963 LLYHCYSLDFRGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFGQK 2139
            + Y  +++DFRGR YP  P L+  G DL R L  F   +PLG  G  W++  LA+++G  
Sbjct: 636  IFYLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVYGYD 695

Query: 2140 NC-----LEFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGK 2304
                     F +E+  +I DSA +P+ GK+WW+KA+ P+  LA CFE+   L   +    
Sbjct: 696  KASFAERARFAQEHEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAALRSPIPSA- 754

Query: 2305 IEDYKCRLPIHQDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDVYTKVLEIVKKKIEQ 2484
               Y+  LP+HQDG+CNG+QHYA L  D  G  AVNL   +   D+Y+ V++IV K +E+
Sbjct: 755  ---YESSLPVHQDGTCNGMQHYAALGGDVRGAKAVNLEAGDRPADIYSGVVDIVNKVVEE 811

Query: 2485 DILEQNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIK---EIVED 2655
            D           + A      L RK+VK+ VMTTVYGVT  GA  QI + +    +I ++
Sbjct: 812  D------KKAGHDIALLIKEPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE 865

Query: 2656 HRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQNTKRILT 2835
            H                        +SY+AK +L+ I +LF  AK I  WL  + + I  
Sbjct: 866  HI--------------------FAVSSYIAKTVLNCIGDLFSGAKAIMDWLTTSARLISR 905

Query: 2836 SYNIKTIDHLLNNNPSSFETIFTTPMS----FFPMSWISPCGLPVIQAYRKIPTSRFNGA 3003
            S     +     N  S+  T   T  +       + W +P GLPV+Q YRK    +   A
Sbjct: 906  SIPPTRVQEAATNLTSTSRTGKITSRAAKEFMSAVIWTTPLGLPVVQPYRKAHKKQIMTA 965

Query: 3004 IGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSYWT 3183
            +     ++ N  S +  +K      PNFIHSLDA H+ +T     +  L F+++HDSYWT
Sbjct: 966  LQSVYISDPNAPSEVSPQKQATAFPPNFIHSLDATHMLLTALKCKQNNLAFASVHDSYWT 1025

Query: 3184 HPNNVEKLSKILREQFVELYSMDYLKYVRQDFINQ 3288
            H   VEK+S ++R+ FVEL+S D +  +R+DF+++
Sbjct: 1026 HAATVEKMSDLIRDTFVELHSQDLVGKLREDFLDR 1060


>Q8L6F8|RPOT2|Q8L6F8 (TrEMBL: Physcomitrella patens (Moss)) RNA
            polymerase.
          Length = 1065

 Score =  319 bits (818), Expect = 1e-85
 Identities = 200/621 (32%), Positives = 307/621 (49%), Gaps = 28/621 (4%)
 Frame = +1

Query: 1510 NKTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSI 1689
            N+ Y +++    +  ++        + Y+PML  P PW     GGYL +K+S + T  + 
Sbjct: 463  NRIYGVIECDQLVLAEIDQSVKHMVMPYMPMLVKPLPWKGFNEGGYLYLKSSIMRTQGAK 522

Query: 1690 QVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLMGNPDGFLSIP------- 1848
            +  +      R  +      L+ +G T W +N  +L+V  KL     G   +        
Sbjct: 523  EQRMAVIDTPRKHMKVVVEALNVLGETGWRVNKRVLEVVEKLWKAGGGIADLVEADDVPI 582

Query: 1849 PLVPDET-------------LPQKTKTELKSLRITFEIMNKLANAFGENGDLLYHCYSLD 1989
            P  PD +               ++T +E  SLR   E+   +A+   +  +  Y+ ++LD
Sbjct: 583  PERPDTSDKEVWHKWKVAVSQAKRTNSERHSLRCDTELKLGVADKLIDE-EAFYYPHNLD 641

Query: 1990 FRGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFGQK-------NC 2145
            FRGR YP  P L H G DL R L +F   +PLGP+G  WIK QLA+L+G         + 
Sbjct: 642  FRGRAYPMHPHLNHLGNDLCRGLLIFADGKPLGPSGLRWIKIQLANLYGGSVGKMSFDDR 701

Query: 2146 LEFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGKIEDYKCR 2325
              F E+  + I+DSA  P+ G + W+KA+ PF  LA C +++  L    + G  E +   
Sbjct: 702  AAFAEDRMEEILDSAERPLDGSRLWLKAEDPFQFLAACIDLRDAL----ASGNPETFVSH 757

Query: 2326 LPIHQDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDVYTKVLEIVKKKIEQDILEQNL 2505
            LP+HQDGSCNGLQHYA L  D  G  +VNLI  +   DVY+ + E V+  +E+D L+  L
Sbjct: 758  LPVHQDGSCNGLQHYAALGRDRIGAESVNLIAGDKPADVYSGIAERVEIIMEKDALKNPL 817

Query: 2506 GTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSKTTF 2685
             + N  +A+     ++RKLVK+ VMT+VYGVT  GA  QI+  +KE          ++  
Sbjct: 818  TSRNAASARLLQGQIDRKLVKQTVMTSVYGVTFIGARMQILNRLKE----------RSPI 867

Query: 2686 SNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQNTKRILTSYNIKTIDHL 2865
            + + +   ++       Y AK  LD++ E+F  A+ I  WL    K I  + +       
Sbjct: 868  AVDPVDTYRA-----ACYAAKVTLDALGEMFKEARCIMSWLGDCAKIIAAAGH------- 915

Query: 2866 LNNNPSSFETIFTTPMSFFPMSWISPCGLPVIQAYRKIPTSRFNGAIGKTTWNNSNKLSP 3045
                                + W SP GLP++Q YRK        ++      N++   P
Sbjct: 916  -------------------TVRWTSPLGLPIVQPYRKHSRHLVKTSLQVLALRNTDDNHP 956

Query: 3046 MDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSYWTHPNNVEKLSKILRE 3225
            +   +      PNF+HSLD++H+ MT  + +KAGLTF+ +HDSYWTH  +VE ++ ILR+
Sbjct: 957  VLASRQRSAFPPNFVHSLDSSHMMMTALACSKAGLTFAGVHDSYWTHAGDVENMNVILRK 1016

Query: 3226 QFVELYSMDYLKYVRQDFINQ 3288
             FV+LY    L+ +  DF  Q
Sbjct: 1017 NFVKLYKQPILENLLLDFQTQ 1037


>Q8SBD4|RPOT1|Q8SBD4 (TrEMBL: Physcomitrella patens (Moss))
            Single-subunit RNA polymerase.
          Length = 1087

 Score =  319 bits (818), Expect = 1e-85
 Identities = 222/732 (30%), Positives = 337/732 (46%), Gaps = 35/732 (4%)
 Frame = +1

Query: 1189 DGKLTTVIEKMKYSFPSVLSQHASPNLKGEVFQYINDDA------YIKLTHQLVKLIIEN 1350
            D KL    EK+K      L +     L G+V Q  N D        +K+  +L++L++E 
Sbjct: 395  DLKLKLAKEKVKK-----LVKQQKLRLVGKVVQQANGDEPWGPAIQVKVGSRLLELMLET 449

Query: 1351 CKVPITSKQMEQLQNSLKLENKEIADQFLISSGGNDDEYLAFCKETKRITNTKNKTYIIV 1530
              +   + Q  Q    L+   K     + I +                  N  N+ Y ++
Sbjct: 450  SVMRSPADQNAQDMTELRPAFKHTLRNYPIKN-----------------KNNMNRIYGVI 492

Query: 1531 KMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSIQVELLNR 1710
            +  P +   L        + Y+PML  P+ W     GGYL +K++ + T+ + ++     
Sbjct: 493  ECDPAVMSALDKSVQHMVMPYMPMLVKPRAWTGFYDGGYLHLKSTIMRTHGAKELRDTII 552

Query: 1711 AGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLMGNPDGFLSIPPLVPDETLPQK--- 1881
            + +R  +      LD +G+T W IN ++LDV  + M    G L+      D  LP K   
Sbjct: 553  STLRQDMIKIVQALDALGSTQWKINNVVLDVLEQ-MWKDGGRLADLVDAEDVPLPDKPES 611

Query: 1882 ------------------TKTELKSLRITFEIMNKLANAFGENGDLLYHCYSLDFRGRIY 2007
                              T +E  S+R   E+    A    +     Y  ++LDFRGR Y
Sbjct: 612  DDFEEIRNWRRHTASAKRTNSERHSVRCDTELKLAAARKLRDEEGFFYP-HNLDFRGRAY 670

Query: 2008 PFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFGQK-------NCLEFYEE 2163
            P  P L H G D+ R +  F     LGP G  W+K  LA+L+G K         + + +E
Sbjct: 671  PIHPHLNHLGSDMCRGILQFAEGRALGPTGLRWLKIHLANLYGGKVGKMSFDARVAWVDE 730

Query: 2164 NYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGKIEDYKCRLPIHQD 2343
              + + DSA  P+ G +WW+ A+ PF  LA C +I+  +      G  E Y   LP+HQD
Sbjct: 731  VMEKVFDSADRPLDGSRWWLDAEDPFQFLATCLDIRNAI----KSGNPETYVSHLPVHQD 786

Query: 2344 GSCNGLQHYAGLAADETGGAAVNLIRLETKQDVYTKVLEIVKKKIEQDILEQNLGTVNLE 2523
            GSCNGLQHYA L  D  G  +VNL+  +   DVY+ +   V++ +E+D  +    + +  
Sbjct: 787  GSCNGLQHYAALGRDRIGAESVNLVAGDKPADVYSGIAARVREIMERDAQKDPKTSRHAA 846

Query: 2524 TAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSKTTFSNETLH 2703
             AK  LP ++RKLVK+ VMT+VYGVT  GA  QI   +KE          + T   +T  
Sbjct: 847  NAKLLLPEIDRKLVKQTVMTSVYGVTFVGARMQIFNRLKE----------RGTIQEQT-- 894

Query: 2704 KLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQNTKRILTSYNIKTIDHLLNNNPS 2883
                       Y AK  L+++ E+F  A+ I  WL    K I                 S
Sbjct: 895  ----EMYRAACYAAKTTLNALGEMFKEARCIMSWLGDCAKII----------------AS 934

Query: 2884 SFETIFTTPMSFFPMSWISPCGLPVIQAYRKIPTSRFNGAIGKTTWNNSNKLSPMDRRKH 3063
            + ET+           W +P GLPV+Q YRK        ++      N +   P+  ++ 
Sbjct: 935  NGETV----------KWTTPLGLPVVQPYRKPGRHLVKTSLQVLALRNLDADQPVLVQRQ 984

Query: 3064 ELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSYWTHPNNVEKLSKILREQFVELY 3243
            +    PNF+HSLD+ H+ MT  +  +AGLTF+ +HDSYWTH  +VE+++ +LRE+FVELY
Sbjct: 985  KSAFPPNFVHSLDSTHMMMTALACQEAGLTFAGVHDSYWTHAGDVEQMNSLLREKFVELY 1044

Query: 3244 SMDYLKYVRQDF 3279
            S   L+ + + F
Sbjct: 1045 SQPVLENLLKSF 1056


>Q8J0Z4||Q8J0Z4 (TrEMBL: Cryptococcus neoformans var. grubii) RPO41.
          Length = 1180

 Score =  319 bits (817), Expect = 2e-85
 Identities = 204/635 (32%), Positives = 310/635 (48%), Gaps = 41/635 (6%)
 Frame = +1

Query: 1507 KNKTYIIVKMHPYIELKLQSLKLGTHLH--YLPMLHPPKPWVNPQSGGYLTIKTSFVSTN 1680
            + K   ++K++P +  +L    +G  +H  +LPML  P+PW     GGYL      +   
Sbjct: 458  RGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYK 517

Query: 1681 DSI-QVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLMGNPDGFLSIPPLV 1857
            +S+ Q + L  A   G L+  +  LD + +T W +N  + DV  +     +    IPP  
Sbjct: 518  ESLEQQKWLKAASEEGHLEPVFHGLDVLSSTPWRVNRRVFDVVLESWNRGEPIADIPPSE 577

Query: 1858 ----------PDET---------LPQKTKTELKSLR------ITFEIMNKLANAFGENGD 1962
                      PD +           +KTK  L   R        F    ++A ++ +  D
Sbjct: 578  DKAHYEFPEKPDSSDQDPQMRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLK--D 635

Query: 1963 LLYHCYSLDFRGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFGQK 2139
            + Y  +++DFRGR YP  P L+  G DL R L  F   +PLG  G  W++  LA+++G  
Sbjct: 636  IFYLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVYGYD 695

Query: 2140 NC-----LEFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGK 2304
                     F +E+  +I DSA +P+ GK+WW+KA+ P+  LA CFE+   L        
Sbjct: 696  KASFAERARFAQEHEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELAAAL----RSPN 751

Query: 2305 IEDYKCRLPIHQDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDVYTKVLEIVKKKIEQ 2484
               Y+  LP+HQDG+CNG+QHYA L  D  G  AVNL   +   D+YT V++IV K +E+
Sbjct: 752  PSAYESSLPVHQDGTCNGMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEE 811

Query: 2485 DILEQNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIK---EIVED 2655
            D           + A      L RK+VK+ VMTTVYGVT  GA  QI + +    +I ++
Sbjct: 812  D------KKAGHDIALLIKEPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE 865

Query: 2656 HRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQNTKRILT 2835
            H                        +SY+AK +L+ I +LF  AK I  WL  + + I  
Sbjct: 866  HI--------------------FAVSSYIAKTVLNCIGDLFSGAKAIMDWLTTSARLISR 905

Query: 2836 SYNIKTIDHLLNNNPSSFETIFTTPMS----FFPMSWISPCGLPVIQAYRKIPTSRFNGA 3003
            S     +     N  S+  T   T  +       + W +P GLPV+Q YRK    +   A
Sbjct: 906  SIPPTRVQEAATNLTSTSRTGKITSRAAKEFMSAVIWTTPLGLPVVQPYRKAHKKQIMTA 965

Query: 3004 IGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSYWT 3183
            +     ++ N  S +  +K      PNFIHSLDA H+ +T     +  + F+++HDSYWT
Sbjct: 966  LQSVYISDPNAPSEVSPQKQATAFPPNFIHSLDATHMLLTALKCKQNNVAFASVHDSYWT 1025

Query: 3184 HPNNVEKLSKILREQFVELYSMDYLKYVRQDFINQ 3288
            H   VEK+S ++R+ FVEL+S D +  +R+DF+++
Sbjct: 1026 HAATVEKMSDLIRDTFVELHSQDLVGKLREDFLDR 1060


>Q8J0W4||Q8J0W4 (TrEMBL: Cryptococcus neoformans var. neoformans)
            RPO41.
          Length = 1180

 Score =  318 bits (816), Expect = 2e-85
 Identities = 204/635 (32%), Positives = 309/635 (48%), Gaps = 41/635 (6%)
 Frame = +1

Query: 1507 KNKTYIIVKMHPYIELKLQSLKLGTHLH--YLPMLHPPKPWVNPQSGGYLTIKTSFVSTN 1680
            + K   ++K++P +  +L    +G  +H  +LPML  P+PW     GGYL      +   
Sbjct: 458  RGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYK 517

Query: 1681 DSI-QVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLMGNPDGFLSIPPLV 1857
            +S+ Q + L  A   G L+  +  LD + +T W +N  + DV  +     +    IPP  
Sbjct: 518  ESLEQQKWLKAASEEGHLEPVFHGLDVLSSTPWRVNRRVFDVVLESWNRGEPIADIPPSE 577

Query: 1858 ----------PDET---------LPQKTKTELKSLR------ITFEIMNKLANAFGENGD 1962
                      PD +           +KTK  L   R        F    ++A ++ +  D
Sbjct: 578  DKAHYEFPEKPDSSDQDPQMRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLK--D 635

Query: 1963 LLYHCYSLDFRGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFGQK 2139
              Y  +++DFRGR YP  P L+  G DL R L  F   +PLG  G  W++  LA+++G  
Sbjct: 636  TFYLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTFGTKKPLGETGLKWLQIHLANVYGYD 695

Query: 2140 NC-----LEFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGK 2304
                     F +E+  +I DSA +P+ GK+WW+KA+ P+  LA CFE+   L        
Sbjct: 696  KASFAERARFAQEHEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELASAL----RSPN 751

Query: 2305 IEDYKCRLPIHQDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDVYTKVLEIVKKKIEQ 2484
               Y+  LP+HQDG+CNG+QHYA L  D  G  AVNL   +   D+YT V++IV K +E+
Sbjct: 752  PSAYESSLPVHQDGTCNGMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEE 811

Query: 2485 DILEQNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIK---EIVED 2655
            D           + A      L RK+VK+ VMTTVYGVT  GA  QI + +    +I ++
Sbjct: 812  D------KKAGHDIALLIKEPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE 865

Query: 2656 HRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQNTKRILT 2835
            H                        +SY+AK +L+ I +LF  AK I  WL  + + I  
Sbjct: 866  HI--------------------FAVSSYIAKTVLNCIGDLFSGAKAIMDWLTTSARLISR 905

Query: 2836 SYNIKTIDHLLNNNPSSFETIFTTPMS----FFPMSWISPCGLPVIQAYRKIPTSRFNGA 3003
            S     +     N  ++  T   T  +       + W +P GLPV+Q YRK    +   A
Sbjct: 906  SIPPARVQEAATNLTNTSRTGKVTSRAAKEFMSAVIWTTPLGLPVVQPYRKAHKKQIMTA 965

Query: 3004 IGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSYWT 3183
            +     ++ N  S +  +K      PNFIHSLDA H+ +T     +  L F+++HDSYWT
Sbjct: 966  LQSVYISDPNAPSEVSPQKQATAFPPNFIHSLDATHMLLTALKCKQNNLAFASVHDSYWT 1025

Query: 3184 HPNNVEKLSKILREQFVELYSMDYLKYVRQDFINQ 3288
            H   VEK+S ++R+ FVEL+S D +  +R+DF+++
Sbjct: 1026 HAATVEKMSDLIRDTFVELHSQDLVGKLREDFLDR 1060


>Q8J0Y5||Q8J0Y5 (TrEMBL: Cryptococcus neoformans var. neoformans)
            RPO41.
          Length = 1202

 Score =  318 bits (816), Expect = 2e-85
 Identities = 204/635 (32%), Positives = 309/635 (48%), Gaps = 41/635 (6%)
 Frame = +1

Query: 1507 KNKTYIIVKMHPYIELKLQSLKLGTHLH--YLPMLHPPKPWVNPQSGGYLTIKTSFVSTN 1680
            + K   ++K++P +  +L    +G  +H  +LPML  P+PW     GGYL      +   
Sbjct: 458  RGKKLGVIKLNPVVAARLAKDDIGVVIHPKHLPMLVEPRPWTAHNKGGYLLHSVPVMRYK 517

Query: 1681 DSI-QVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLMGNPDGFLSIPPLV 1857
            +S+ Q + L  A   G L+  +  LD + +T W +N  + DV  +     +    IPP  
Sbjct: 518  ESLEQQKWLKAASEEGHLEPVFHGLDVLSSTPWRVNRRVFDVVLESWNRGEPIADIPPSE 577

Query: 1858 ----------PDET---------LPQKTKTELKSLR------ITFEIMNKLANAFGENGD 1962
                      PD +           +KTK  L   R        F    ++A ++ +  D
Sbjct: 578  DKAHYEFPEKPDSSDQDPQMRVQYVEKTKAVLAQQRKDHAERCKFNYNIEIARSYLK--D 635

Query: 1963 LLYHCYSLDFRGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFGQK 2139
              Y  +++DFRGR YP  P L+  G DL R L  F   +PLG  G  W++  LA+++G  
Sbjct: 636  TFYLPHNMDFRGRAYPIPPHLSPVGDDLCRGLLTFGNQKPLGETGLKWLQIHLANVYGYD 695

Query: 2140 NC-----LEFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGK 2304
                     F +E+  +I DSA +P+ GK+WW+KA+ P+  LA CFE+   L        
Sbjct: 696  KASFAERARFAQEHEADIFDSADHPLDGKRWWLKAEDPWQCLATCFELASAL----RSPN 751

Query: 2305 IEDYKCRLPIHQDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDVYTKVLEIVKKKIEQ 2484
               Y+  LP+HQDG+CNG+QHYA L  D  G  AVNL   +   D+YT V++IV K +E+
Sbjct: 752  PSAYESSLPVHQDGTCNGMQHYAALGGDVRGAKAVNLEAGDRPADIYTGVVDIVNKVVEE 811

Query: 2485 DILEQNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIK---EIVED 2655
            D           + A      L RK+VK+ VMTTVYGVT  GA  QI + +    +I ++
Sbjct: 812  D------KKAGHDIALLIKEPLGRKVVKQTVMTTVYGVTFVGARDQIAKQLHARGDIAQE 865

Query: 2656 HRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQNTKRILT 2835
            H                        +SY+AK +L+ I +LF  AK I  WL  + + I  
Sbjct: 866  HI--------------------FAVSSYIAKTVLNCIGDLFSGAKAIMDWLTTSARLISR 905

Query: 2836 SYNIKTIDHLLNNNPSSFETIFTTPMS----FFPMSWISPCGLPVIQAYRKIPTSRFNGA 3003
            S     +     N  ++  T   T  +       + W +P GLPV+Q YRK    +   A
Sbjct: 906  SIPPTRVQEAATNLTNTSRTGKVTSRAAKEFMSAVIWTTPLGLPVVQPYRKAHKKQIMTA 965

Query: 3004 IGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSYWT 3183
            +     ++ N  S +  +K      PNFIHSLDA H+ +T     +  L F+++HDSYWT
Sbjct: 966  LQSVYISDPNAPSEVSPQKQATAFPPNFIHSLDATHMLLTALKCKQNNLAFASVHDSYWT 1025

Query: 3184 HPNNVEKLSKILREQFVELYSMDYLKYVRQDFINQ 3288
            H   VEK+S ++R+ FVEL+S D +  +R+DF+++
Sbjct: 1026 HAATVEKMSDLIRDTFVELHSQDLVGKLREDFLDR 1060


>Q8L6F9|RPOT1|Q8L6F9 (TrEMBL: Physcomitrella patens (Moss)) RNA
            polymerase.
          Length = 1087

 Score =  318 bits (815), Expect = 3e-85
 Identities = 221/732 (30%), Positives = 338/732 (46%), Gaps = 35/732 (4%)
 Frame = +1

Query: 1189 DGKLTTVIEKMKYSFPSVLSQHASPNLKGEVFQYINDDA------YIKLTHQLVKLIIEN 1350
            D KL    EK+K      L +     L G+V Q  N D        +K+  +L++L++E 
Sbjct: 395  DLKLKLAKEKVKK-----LVKQQKLRLVGKVVQQANGDEPWGPAIQVKVGSRLLELMLET 449

Query: 1351 CKVPITSKQMEQLQNSLKLENKEIADQFLISSGGNDDEYLAFCKETKRITNTKNKTYIIV 1530
              +   + Q  Q    L+   K     + I +                  N  N+ Y ++
Sbjct: 450  SVMRSPADQNAQDMTELRPAFKHTLRNYPIKN-----------------KNNMNRIYGVI 492

Query: 1531 KMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSIQVELLNR 1710
            +  P +   L        + Y+PML  P+ W     GGYL +K++ + T+ + ++     
Sbjct: 493  ECDPAVMSALDKSVQHMVMPYMPMLVKPRAWTGFYDGGYLHLKSTIMRTHGAKELRDTII 552

Query: 1711 AGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLMGNPDGFLSIPPLVPDETLPQK--- 1881
            + +R  +      LD +G+T W IN ++LDV  ++  +  G L+      D  LP K   
Sbjct: 553  STLRQDMIKIVQALDALGSTQWKINNVVLDVLEQVWKD-GGRLADLVDAEDVPLPDKPES 611

Query: 1882 ------------------TKTELKSLRITFEIMNKLANAFGENGDLLYHCYSLDFRGRIY 2007
                              T +E  S+R   E+    A    +     Y  ++LDFRGR Y
Sbjct: 612  DDFEEIRNWRRHTASAKRTNSERHSVRCDTELKLAAARKLRDEEGFFYP-HNLDFRGRAY 670

Query: 2008 PFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFGQK-------NCLEFYEE 2163
            P  P L H G D+ R +  F     LGP G  W+K  LA+L+G K         + + +E
Sbjct: 671  PIHPHLNHLGSDMCRGILQFAEGRALGPTGLRWLKIHLANLYGGKVGKMSFDARVAWVDE 730

Query: 2164 NYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGKIEDYKCRLPIHQD 2343
              + + DSA  P+ G +WW+ A+ PF  LA C +I+  +      G  E Y   LP+HQD
Sbjct: 731  VMEKVFDSADRPLDGSRWWLDAEDPFQFLATCLDIRNAI----KSGNPETYVSHLPVHQD 786

Query: 2344 GSCNGLQHYAGLAADETGGAAVNLIRLETKQDVYTKVLEIVKKKIEQDILEQNLGTVNLE 2523
            GSCNGLQHYA L  D  G  +VNL+  +   DVY+ +   V++ +E+D  +    + +  
Sbjct: 787  GSCNGLQHYAALGRDRIGAESVNLVAGDKPADVYSGIAARVREIMERDAQKDPKTSRHAA 846

Query: 2524 TAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSKTTFSNETLH 2703
             AK  LP ++RKLVK+ VMT+VYGVT  GA  QI   +KE          + T   +T  
Sbjct: 847  NAKLLLPEIDRKLVKQTVMTSVYGVTFVGARMQIFNRLKE----------RGTIQEQT-- 894

Query: 2704 KLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQNTKRILTSYNIKTIDHLLNNNPS 2883
                       Y AK  L+++ E+F  A+ I  WL    K I                 S
Sbjct: 895  ----EMYRAACYAAKTTLNALGEMFKEARCIMSWLGDCAKII----------------AS 934

Query: 2884 SFETIFTTPMSFFPMSWISPCGLPVIQAYRKIPTSRFNGAIGKTTWNNSNKLSPMDRRKH 3063
            + ET+           W +P GLPV+Q YRK        ++      N +   P+  ++ 
Sbjct: 935  NGETV----------KWTTPLGLPVVQPYRKPGRHLVKTSLQVLALRNLDADQPVLVQRQ 984

Query: 3064 ELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSYWTHPNNVEKLSKILREQFVELY 3243
            +    PNF+HSLD+ H+ MT  +  +AGLTF+ +HDSYWTH  +VE+++ +LRE+FVELY
Sbjct: 985  KSAFPPNFVHSLDSTHMMMTALACQEAGLTFAGVHDSYWTHAGDVEQMNSLLREKFVELY 1044

Query: 3244 SMDYLKYVRQDF 3279
            S   L+ + + F
Sbjct: 1045 SQPVLENLLKSF 1056


>P92969|RPOMT|RPOM_ARATH (SP: Arabidopsis thaliana (Mouse-ear cress))
            DNA-directed RNA polymerase, mitochondrial precursor (EC
            2.7.7.6).
          Length = 976

 Score =  316 bits (810), Expect = 1e-84
 Identities = 221/729 (30%), Positives = 345/729 (47%), Gaps = 34/729 (4%)
 Frame = +1

Query: 1195 KLTTVIEKMKYSFPSVLSQHASPNLKGEVFQYINDDAYIKLTHQLVKLIIENCKVPITSK 1374
            ++T ++EK K      L Q  +   K + F+    +A +K+  +L++L++EN  +   ++
Sbjct: 296  QVTVLMEKNK------LRQVKALVRKHDSFKPWGQEAQVKVGARLIQLLMENAYIQPPAE 349

Query: 1375 QMEQLQNSLKLENKEIADQFLISSGGNDDEYLAFCKETKRIT--NTK-NKTYIIVKMHPY 1545
            Q +                      G  D   AF +  + +T  NTK ++ Y  ++  P 
Sbjct: 350  QFDD---------------------GPPDIRPAFKQNFRTVTLENTKTSRRYGCIECDPL 388

Query: 1546 IELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSIQVELLNRAGVRG 1725
            +   L        + YLPML PP+ W     G +  + +  + T+ + Q   + +   + 
Sbjct: 389  VLKGLDKSARHMVIPYLPMLIPPQNWTGYDQGAHFFLPSYVMRTHGAKQQRTVMKRTPKE 448

Query: 1726 QLDNAYSCLDQMGNTAWAINPLMLDVFNKLMGNPDGFLSIPPLVPDETLPQ--------- 1878
            QL+  Y  LD +GNT W IN  +L + +++  N      I  LV  E +P          
Sbjct: 449  QLEPVYEALDTLGNTKWKINKKVLSLVDRIWANGG---RIGGLVDREDVPIPEEPEREDQ 505

Query: 1879 --------------KTKTELKSLRITFEIMNKLANAFGENGDLLYHCYSLDFRGRIYPFS 2016
                          K   E  S R   E+  ++A    +  +  Y+ +++DFRGR YP  
Sbjct: 506  EKFKNWRWESKKAIKQNNERHSQRCDIELKLEVARKMKDE-EGFYYPHNVDFRGRAYPIH 564

Query: 2017 P-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFG-------QKNCLEFYEENYD 2172
            P L H G DL R +  F   +PLG +G  W+K  +A+L+         ++ + F E + +
Sbjct: 565  PYLNHLGSDLCRGILEFCEGKPLGKSGLRWLKIHIANLYAGGVDKLAYEDRIAFTESHLE 624

Query: 2173 NIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGKIEDYKCRLPIHQDGSC 2352
            +I DS+  P+ GK+WW+ A+ PF  LA C  + + L        I      +PIHQDGSC
Sbjct: 625  DIFDSSDRPLEGKRWWLNAEDPFQCLAACINLSEALRSPFPEAAIS----HIPIHQDGSC 680

Query: 2353 NGLQHYAGLAADETGGAAVNLIRLETKQDVYTKVLEIVKKKIEQDILEQNLGTVNLETAK 2532
            NGLQHYA L  D+ G  AVNL+  E   DVYT++   V K ++QD  E      N   AK
Sbjct: 681  NGLQHYAALGRDKLGADAVNLVTGEKPADVYTEIAARVLKIMQQDAEEDPETFPNATYAK 740

Query: 2533 FFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSKTTFSNETLHKLK 2712
              L  ++RKLVK+ VMT+VYGVT +GA  QI + +KE          + TF ++      
Sbjct: 741  LMLDQVDRKLVKQTVMTSVYGVTYSGARDQIKKRLKE----------RGTFEDD------ 784

Query: 2713 SVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQNTKRILTSYNIKTIDHLLNNNPSSFE 2892
            S+    + Y AK  L +++E+F  A+ I+ W     K I +  N                
Sbjct: 785  SLTFHASCYAAKITLKALEEMFEAARAIKSWFGDCAKIIASENN---------------- 828

Query: 2893 TIFTTPMSFFPMSWISPCGLPVIQAYRKIPTSRFNGAIGKTTWNNSNKLSPMDRRKHELG 3072
                       + W +P GLPV+Q YRK         +   T   S +   +  R+    
Sbjct: 829  ----------AVCWTTPLGLPVVQPYRKPGRHLVKTTLQVLTL--SRETDKVMARRQMTA 876

Query: 3073 IAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSYWTHPNNVEKLSKILREQFVELYSMD 3252
             APNFIHSLD +H+ MT  + N+AGL+F+ +HDS+WTH  +V+ ++ ILRE+FVELY   
Sbjct: 877  FAPNFIHSLDGSHMMMTAVACNRAGLSFAGVHDSFWTHACDVDVMNTILREKFVELYEKP 936

Query: 3253 YLKYVRQDF 3279
             L+ + + F
Sbjct: 937  ILENLLESF 945


>Q8L4F8|RPOT3|RPO3_NICSY (SP: Nicotiana tabacum (Common tobacco))
            DNA-directed RNA polymerase 3, chloroplast precursor (EC
            2.7.7.6) (T7 bacteriophage-type single subunit RNA
            polymerase 3) (NsRpoT-C).
          Length = 977

 Score =  314 bits (805), Expect = 4e-84
 Identities = 208/631 (32%), Positives = 303/631 (48%), Gaps = 29/631 (4%)
 Frame = +1

Query: 1513 KTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSIQ 1692
            K Y +++  P +   +        + Y+PML PPK W     GGYL + +  + T+ S +
Sbjct: 380  KKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRR 439

Query: 1693 VELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLM---GNPDGFLS-----IP 1848
             +   R+    Q+   Y  LD +G+T W +N  +L V   +    GN  G +      IP
Sbjct: 440  QQDAVRSVPTKQMQQVYEALDTLGSTKWRVNKRILSVVESIWAGGGNIAGLVDRKDVPIP 499

Query: 1849 PLVPDETLP-----------QKTKTELKSLRITFEIMNKLANAFGENGDLLYHCYSLDFR 1995
             L  D+ +            +K   EL S R   E+   +A    +  +  Y+ ++LDFR
Sbjct: 500  ELHSDDIMEVKKWKWRVRKSKKINQELHSQRCDTELKLSVARKLKDE-EGFYYPHNLDFR 558

Query: 1996 GRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFG---QKNC----LE 2151
            GR YP  P L H   DL R +  F    PLG +G  W+K  LASL+    +K C    L 
Sbjct: 559  GRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGIEKLCYDARLA 618

Query: 2152 FYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGKIEDYKCRLP 2331
            F E + D+I+DSA NP+ G +WW+ A+ PF  LA C  + + L               LP
Sbjct: 619  FVENHIDDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEAL----KSSSPHTVFSHLP 674

Query: 2332 IHQDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDVYTKVLEIVKKKIEQDILEQNLGT 2511
            IHQDGSCNGLQHYA L  D    AAVNL+  +   DVYT++   V   I  D ++     
Sbjct: 675  IHQDGSCNGLQHYAALGRDSMEAAAVNLVAGDKPADVYTEIALRVDHIIRGDSIKDPATD 734

Query: 2512 VNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKE--IVEDHRTNPSKTTF 2685
             N   AK  +  ++RKLVK+ VMT+VYGVT  GA  QI + ++E  +++D R        
Sbjct: 735  PNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDR-------- 786

Query: 2686 SNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQNTKRILTSYNIKTIDHL 2865
                      +  T + Y AK  L ++ ELF  A+    W L +  +++ S N       
Sbjct: 787  ----------LLFTASCYAAKVTLAALGELFQAARGTMTW-LGDCAKVIASEN------- 828

Query: 2866 LNNNPSSFETIFTTPMSFFPMSWISPCGLPVIQAYRKIPTSRFNGAIGKTTWNNSNKLSP 3045
                               P+ W +P GLPV+Q Y K  T R              +   
Sbjct: 829  ------------------QPVRWTTPLGLPVVQPYFK--TQRHVIRTSLQVLALQREGDT 868

Query: 3046 MDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSYWTHPNNVEKLSKILRE 3225
            ++ RK      PNF+HSLD +H+ MT  +   AGL F+ +HDS+WTH  +V+++++ILRE
Sbjct: 869  VEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILRE 928

Query: 3226 QFVELYSMDYLKYVRQDFINQVKNSYQLVYF 3318
            +FVELYSM  L    +D +   +NSY  + F
Sbjct: 929  KFVELYSMPIL----EDLLESFQNSYPALTF 955


>Q8L6J7|RPOT2-TOM|Q8L6J7 (TrEMBL: Nicotiana tabacum (Common tobacco))
            Mitochondrial and chloroplast RNA polymerase.
          Length = 1021

 Score =  314 bits (804), Expect = 6e-84
 Identities = 225/708 (31%), Positives = 338/708 (47%), Gaps = 35/708 (4%)
 Frame = +1

Query: 1300 DAYIKLTHQLVKLIIENCKVPITSKQMEQLQNSLKLENKEIADQFLISSGGNDDEYLAFC 1479
            DA  K+  +L++L+++   +       +   N L ++  +I   FL S            
Sbjct: 370  DAKAKVGSRLIELLLQTAYI-------QPPANQLAVDPPDIRPAFLHS-------VRTVA 415

Query: 1480 KETKRITNTKNKTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIK 1659
            KETK    + ++ Y I++    +   L+       + Y+PML PP  W     GG+L + 
Sbjct: 416  KETK----SASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLP 471

Query: 1660 TSFVSTNDSIQVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNK--------- 1812
            +  + T+ + Q     +   R QL   +  LD +G+T W IN  +L V ++         
Sbjct: 472  SYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSVIDRIWAGGGRLA 531

Query: 1813 -LMGNPDGFLSIPPLVPDETLPQKTKTELKSL----------RITFEIMNKLANAFGENG 1959
             L+   D  L   P   DE L  K + ++KS+          R   E+   +A    +  
Sbjct: 532  DLVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEE 591

Query: 1960 DLLYHCYSLDFRGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFG- 2133
               Y  +++DFRGR YP  P L H G D+ R + +F    PLG +G  W+K  LA+LF  
Sbjct: 592  GFFYP-HNVDFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGLRWLKIHLANLFAG 650

Query: 2134 --QKNCLE----FYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMS 2295
              +K  LE    F E + D+I DSA  P+ G++WW+ A+ PF  LAVC  + + +     
Sbjct: 651  GVEKLSLEGRIAFTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAVCINLSEAV----R 706

Query: 2296 GGKIEDYKCRLPIHQDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDVYT----KVLEI 2463
                E     +P+HQDGSCNGLQHYA L  DE G AAVNL+  E   DVY+    +VL+I
Sbjct: 707  SSSPETSISHIPVHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAARVLDI 766

Query: 2464 VKKKIEQDILEQNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKE 2643
            +K+  ++D  E      +   A+  +  ++RKLVK+ VMT+VYGVT  GA  QI + +KE
Sbjct: 767  MKRDAQRDPAE----FPDAVRARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 822

Query: 2644 ---IVEDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQ 2814
               I +D                   S       Y AK  L ++ E+F  A+ I  WL +
Sbjct: 823  RGAIADD-------------------SELFGAACYAAKVTLTALGEMFEAARSIMTWLGE 863

Query: 2815 NTKRILTSYNIKTIDHLLNNNPSSFETIFTTPMSFFPMSWISPCGLPVIQAYRKIPTSRF 2994
              K I+ S N                          P+ W +P GLPV+Q YRKI     
Sbjct: 864  CAK-IIASEN-------------------------EPVRWTTPLGLPVVQPYRKIGRHLI 897

Query: 2995 NGAIGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDS 3174
              ++   T     +   + R++      PNFIHSLD +H+ MT  +  +AGL F+ +HDS
Sbjct: 898  KTSLQILTLQQETEKVMVKRQR--TAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDS 955

Query: 3175 YWTHPNNVEKLSKILREQFVELYSMDYLKYVRQDFINQVKNSYQLVYF 3318
            YWTH  +V+KL++ILRE+FVELY    L+ + + F    + SY  + F
Sbjct: 956  YWTHACDVDKLNRILREKFVELYETPILEKLLESF----QTSYPTLLF 999


>Q8L6K2|RPOT1-TOM|Q8L6K2 (TrEMBL: Nicotiana tabacum (Common tobacco))
            Phage-type RNA polymerase.
          Length = 1002

 Score =  313 bits (802), Expect = 1e-83
 Identities = 205/641 (31%), Positives = 308/641 (48%), Gaps = 31/641 (4%)
 Frame = +1

Query: 1450 GNDDEYLAFCKETKRITNTK-NKTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWV 1626
            G  D   AF    K +   K ++ Y +++  P +   L        + Y+PML PP+ W+
Sbjct: 382  GPPDIRPAFVHTLKTVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWL 441

Query: 1627 NPQSGGYLTIKTSFVSTNDSIQVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVF 1806
                GGYL + +  + T+ + Q     +   + QL+  +  LD +GNT W +N  +L + 
Sbjct: 442  GYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIV 501

Query: 1807 NK----------LMGNPDGFLSIPPLVPDETLPQKTKTELK----------SLRITFEIM 1926
            N+          L+   D  L   P   DE   +K K ++K          S R   E+ 
Sbjct: 502  NRIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELK 561

Query: 1927 NKLANAFGENGDLLYHCYSLDFRGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYW 2103
              +A    +  D  Y+ ++LDFRGR YP  P L H G DL R +  F    PLG +G  W
Sbjct: 562  LAVARKMKDE-DGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRW 620

Query: 2104 IKYQLASLFG-------QKNCLEFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCF 2262
            +K  LA+++G        +  + F E + ++I DSA  P+ GK+WW+ A+ PF  LA C 
Sbjct: 621  LKIHLANVYGGGVDKLSYEGRVAFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCI 680

Query: 2263 EIKKILDYRMSGGKIEDYKCRLPIHQDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDV 2442
             I + L         E     +PIHQDGSCNGLQHYA L  D+ G AAVNL+  +   DV
Sbjct: 681  NIAEAL----RSPSPETAISYMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADV 736

Query: 2443 YTKVLEIVKKKIEQDILEQNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQ 2622
            Y+ +   V   +++D  +      N+  A+  +  ++RKLVK+ VMT+VYGVT  GA  Q
Sbjct: 737  YSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQ 796

Query: 2623 IMQTIKE--IVEDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQI 2796
            I + +KE  ++ED           NE              Y AK  L ++ E+F  A+ I
Sbjct: 797  IKKRLKERGVIED----------DNEL--------FAAACYAAKTTLTALGEMFEAARSI 838

Query: 2797 EKWLLQNTKRILTSYNIKTIDHLLNNNPSSFETIFTTPMSFFPMSWISPCGLPVIQAYRK 2976
              WL    K I                           M   P+ W +P GLPV+Q YRK
Sbjct: 839  MSWLGDCAKII--------------------------AMENHPVRWTTPLGLPVVQPYRK 872

Query: 2977 IPTSRFNGAIGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTF 3156
            +       ++   T         + R++      PNF+HSLD +H+ MT  +  ++GL+F
Sbjct: 873  LGRHLIKTSLQILTLQRETDKVMVKRQR--TAFPPNFVHSLDGSHMMMTAIACKESGLSF 930

Query: 3157 SAIHDSYWTHPNNVEKLSKILREQFVELYSMDYLKYVRQDF 3279
            + +HDSYWTH  +V++++KILRE+FVELY    L+ + + F
Sbjct: 931  AGVHDSYWTHACDVDQMNKILREKFVELYDAPILENLLESF 971


>Q8L6J5|NICTARPOT1-TOM|Q8L6J5 (TrEMBL: Nicotiana tabacum (Common
            tobacco)) Mitochondrial RNA polymerase (Fragment).
          Length = 715

 Score =  311 bits (797), Expect = 4e-83
 Identities = 204/641 (31%), Positives = 308/641 (48%), Gaps = 31/641 (4%)
 Frame = +1

Query: 1450 GNDDEYLAFCKETKRITNTK-NKTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWV 1626
            G  D   AF    K +   K ++ Y +++  P +   L        + Y+PML PP+ W+
Sbjct: 95   GPPDIRPAFVHTLKTVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWL 154

Query: 1627 NPQSGGYLTIKTSFVSTNDSIQVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVF 1806
                GGYL + +  + T+ + Q     +   + QL+  +  LD +GNT W +N  +L + 
Sbjct: 155  GYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRVNRKVLGIV 214

Query: 1807 NK----------LMGNPDGFLSIPPLVPDETLPQKTKTELK----------SLRITFEIM 1926
            ++          L+   D  L   P   DE   +K K ++K          S R   E+ 
Sbjct: 215  DRIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKWKWKVKGVKKENCERHSQRCDIELK 274

Query: 1927 NKLANAFGENGDLLYHCYSLDFRGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYW 2103
              +A    +  D  Y+ ++LDFRGR YP  P L H G DL R +  F    PLG +G  W
Sbjct: 275  LAVARKMKDE-DGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGTSGLRW 333

Query: 2104 IKYQLASLFG-------QKNCLEFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCF 2262
            +K  LA+++G        +  + F E + ++I DSA  P+ GK+WW+ A+ PF  LA C 
Sbjct: 334  LKIHLANVYGGGVDKLSYEGRVAFSENHLEDIFDSAERPLEGKRWWLGAEDPFQCLATCI 393

Query: 2263 EIKKILDYRMSGGKIEDYKCRLPIHQDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDV 2442
             I + L         E     +PIHQDGSCNGLQHYA L  D+ G AAVNL+  +   DV
Sbjct: 394  NIAEAL----RSPSPETAISYMPIHQDGSCNGLQHYAALGRDKLGAAAVNLVAGDKPADV 449

Query: 2443 YTKVLEIVKKKIEQDILEQNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQ 2622
            Y+ +   V   +++D  +      N+  A+  +  ++RKLVK+ VMT+VYGVT  GA  Q
Sbjct: 450  YSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQ 509

Query: 2623 IMQTIKE--IVEDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQI 2796
            I + +KE  ++ED           NE              Y AK  L ++ E+F  A+ I
Sbjct: 510  IKKRLKERGVIED----------DNEL--------FAAACYAAKTTLTALGEMFEAARSI 551

Query: 2797 EKWLLQNTKRILTSYNIKTIDHLLNNNPSSFETIFTTPMSFFPMSWISPCGLPVIQAYRK 2976
              WL    K I                           M   P+ W +P GLPV+Q YRK
Sbjct: 552  MSWLGDCAKII--------------------------AMENHPVRWTTPLGLPVVQPYRK 585

Query: 2977 IPTSRFNGAIGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTF 3156
            +       ++   T         + R++      PNF+HSLD +H+ MT  +  ++GL+F
Sbjct: 586  LGRHLIKTSLQILTLQRETDKVMVKRQR--TAFPPNFVHSLDGSHMMMTAIACKESGLSF 643

Query: 3157 SAIHDSYWTHPNNVEKLSKILREQFVELYSMDYLKYVRQDF 3279
            + +HDSYWTH  +V++++KILRE+FVELY    L+ + + F
Sbjct: 644  AGVHDSYWTHACDVDQMNKILREKFVELYDAPILENLLESF 684


>Q41524||Q41524 (TrEMBL: Triticum aestivum (Wheat)) Single-subunit RNA
            polymerase C.
          Length = 949

 Score =  311 bits (797), Expect = 4e-83
 Identities = 205/688 (29%), Positives = 326/688 (47%), Gaps = 28/688 (4%)
 Frame = +1

Query: 1300 DAYIKLTHQLVKLIIENCKVPITSKQMEQLQNSLKLENKEIADQFLISSGGNDDEYLAFC 1479
            +A +KL  +L++L++++  V   + Q        +   K +  + ++ +G          
Sbjct: 298  EAQVKLGTRLIELLLDSAFVQSPADQTPDSSPDFRPAFKHVLRKPIVENG---------- 347

Query: 1480 KETKRITNTKNKTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIK 1659
                       K + +++  P +    +S      + YLPML PP  W     GG+L + 
Sbjct: 348  --------RLKKKHFVIECDPLVHEGFESTARHVEIPYLPMLVPPTKWKGYDKGGHLFLP 399

Query: 1660 TSFVSTNDSIQVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLMGNPDGFL 1839
            +  + T+     +   ++  R QL   +  LD +G T W +N  + DV   +     G  
Sbjct: 400  SYVMRTHGVKDQKEAIKSVPRKQLRKVFEALDILGGTKWRVNRRVHDVVETIWSRGGGIA 459

Query: 1840 ------SIP-PLVPDETLP-------------QKTKTELKSLRITFEIMNKLANAFGENG 1959
                  +IP P  P+   P             +K   EL + R   E+   +A    E  
Sbjct: 460  GLVDKGNIPLPEQPETEDPDEIQKWKWSVKKTKKANRELHAERCDTELKLSVARKMREE- 518

Query: 1960 DLLYHCYSLDFRGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFG- 2133
            D  Y+ ++LDFRGR YP  P L+H G DL R +  +    PLG +G  W+K  LA+ +G 
Sbjct: 519  DGFYYPHNLDFRGRAYPMHPHLSHLGSDLCRGVLEYAEGRPLGKSGLRWLKIHLANKYGG 578

Query: 2134 ------QKNCLEFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMS 2295
                   ++ L F E++  +I DSA NP+ G  WW+ A+ PF  LA C ++   L+    
Sbjct: 579  GIEKLSHESKLTFVEDHLPDIFDSAANPVDGNCWWINAEDPFQCLAACMDLSNALESSSP 638

Query: 2296 GGKIEDYKCRLPIHQDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDVYTKVLEIVKKK 2475
             G +      LPIHQDGSCNGLQHYA L  D  G AAVNL+  E   D+Y+++   V   
Sbjct: 639  HGAVS----HLPIHQDGSCNGLQHYAALGRDYMGAAAVNLVPGEKPADIYSEIAARVLDV 694

Query: 2476 IEQDILEQNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKEIVED 2655
            + +D ++      ++  AK  +  ++RKLVK+ VMT+VYGVT  GA  QIM+ ++E  + 
Sbjct: 695  VREDSMKDPATDPSVPLAKVLVDEVDRKLVKQTVMTSVYGVTFIGARQQIMKRLQE--KG 752

Query: 2656 HRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQNTKRILT 2835
            H T+       ++ L+ +       + Y  +  LD++ ++F  A+ I  WL    K I +
Sbjct: 753  HITD-------DKLLYDV-------SCYATRVTLDALGQMFQSARAIMAWLGDCAKMIAS 798

Query: 2836 SYNIKTIDHLLNNNPSSFETIFTTPMSFFPMSWISPCGLPVIQAYRKIPTSRFNGAIGKT 3015
                                         P+ W SP GLPV+Q Y+K        ++   
Sbjct: 799  KNQ--------------------------PVRWTSPVGLPVVQPYKKYKNYMIRTSLQCL 832

Query: 3016 TWNNSNKLSPMDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSYWTHPNN 3195
                        R+K      PNF+HSLD++H+ MT  +  +AGL F+ +HDS+W H  +
Sbjct: 833  ALRREGDAIATQRQK--AAFPPNFVHSLDSSHMMMTAITCKEAGLHFAGVHDSFWVHACD 890

Query: 3196 VEKLSKILREQFVELYSMDYLKYVRQDF 3279
            V+K+++ILREQFVELYSM  L+ + ++F
Sbjct: 891  VDKMNQILREQFVELYSMPILENLLEEF 918


>Q93Y94|RPOT1|RPO1_NICSY (SP: Nicotiana sylvestris (Wood tobacco))
            DNA-directed RNA polymerase 1, mitochondrial precursor
            (EC 2.7.7.6) (T7 bacteriophage-type single subunit RNA
            polymerase 1) (NsRpoT-A).
          Length = 1002

 Score =  309 bits (792), Expect = 1e-82
 Identities = 201/634 (31%), Positives = 305/634 (48%), Gaps = 31/634 (4%)
 Frame = +1

Query: 1471 AFCKETKRITNTK-NKTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGY 1647
            AF    K +   K ++ Y +++  P +   L        + Y+PML PP+ W+    G Y
Sbjct: 389  AFVHTLKTVETMKGSRRYGVIQCDPLVRKGLDKTARHMVIPYMPMLVPPQSWLGYDKGAY 448

Query: 1648 LTIKTSFVSTNDSIQVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNK----- 1812
            L + +  + T+ + Q     +   + QL+  +  LD +GNT W +N  +L + ++     
Sbjct: 449  LFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLGNTKWRLNRKVLGIVDRIWASG 508

Query: 1813 -----LMGNPDGFLSIPPLVPDETLPQKTKTELK----------SLRITFEIMNKLANAF 1947
                 L+   D  L   P   DE   +K K ++K          S R   E+   +A   
Sbjct: 509  GRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKENCERHSQRCDIELKLAVARKM 568

Query: 1948 GENGDLLYHCYSLDFRGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLAS 2124
             +  D  Y+ ++LDFRGR YP  P L H G DL R +  F    PLG +G  W+K  LA+
Sbjct: 569  KDE-DGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLAN 627

Query: 2125 LFG-------QKNCLEFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILD 2283
            ++G        +  + F E + ++I DSA  P+ GK+WW+ A+ PF  LA C  I + L 
Sbjct: 628  VYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWLGAEDPFQCLATCINIAEAL- 686

Query: 2284 YRMSGGKIEDYKCRLPIHQDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDVYTKVLEI 2463
                    E     +PIHQDGSCNGLQHYA L  D  G AAVNL+  +   DVY+ +   
Sbjct: 687  ---RSPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNLVAGDKPADVYSGIAAR 743

Query: 2464 VKKKIEQDILEQNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKE 2643
            V   +++D  +      N+  A+  +  ++RKLVK+ VMT+VYGVT  GA  QI + +KE
Sbjct: 744  VLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 803

Query: 2644 --IVEDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQN 2817
              ++ED           NE              Y AK  L ++ E+F  A+ I  WL   
Sbjct: 804  RGVIED----------DNEL--------FAAACYAAKTTLTALGEMFEAARSIMSWLGDC 845

Query: 2818 TKRILTSYNIKTIDHLLNNNPSSFETIFTTPMSFFPMSWISPCGLPVIQAYRKIPTSRFN 2997
             K I                           M   P+ W +P GLPV+Q YRK+      
Sbjct: 846  AKII--------------------------AMENHPVRWTTPLGLPVVQPYRKLGRHLIK 879

Query: 2998 GAIGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSY 3177
             ++   T         + R++      PNF+HSLD +H+ MT  +  ++GL+F+ +HDSY
Sbjct: 880  TSLQILTLQRETDKVMVKRQR--TAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSY 937

Query: 3178 WTHPNNVEKLSKILREQFVELYSMDYLKYVRQDF 3279
            WTH ++V++++KILRE+FVELY    L+ + + F
Sbjct: 938  WTHASDVDQMNKILREKFVELYDAPILENLLESF 971


>P38671|CYT-5|RPOM_NEUCR (SP: Neurospora crassa) DNA-directed RNA
            polymerase, mitochondrial precursor (EC 2.7.7.6).
          Length = 1422

 Score =  309 bits (792), Expect = 1e-82
 Identities = 213/692 (30%), Positives = 329/692 (47%), Gaps = 65/692 (9%)
 Frame = +1

Query: 1591 YLPMLHPPKPWVNPQSGGYLTIKTSFVST-NDSIQVELLNRAGV-RGQLDNAYSCLDQMG 1764
            +LPM+ PP PWV+ + G YL  KT  +   N   +  L   A + RG +D  +  LD +G
Sbjct: 626  HLPMVTPPDPWVSFEKGAYLETKTPVLRLKNGEREQRLYTEAAIARGDMDQVFKGLDVLG 685

Query: 1765 NTAWAINPLMLDVFNKLMGNPDGFLSIPPLVP------------DETLPQKTKTELK--- 1899
             T W IN  +  V   +  +     +IPPL P            D T+ +    E+K   
Sbjct: 686  KTGWKINSPVFKVMLDVWNSGKQVANIPPLDPIFDLPPEPASTEDPTVKRAWLKEIKVIE 745

Query: 1900 -------SLRITFEIMNKLANAFGENGDLLYHCYSLDFRGRIYPFSP-LTHYGGDLARSL 2055
                   S R       ++A A+ +     Y  +++DFRGR YP  P L H G D  R L
Sbjct: 746  NERSGFDSQRCFMNFQLEIARAYRDQ--TFYFPHNVDFRGRAYPIPPYLNHMGADHVRGL 803

Query: 2056 FMFWYSEPLGPNGFYWIKYQLASLFG-QKNCLE----FYEENYDNIIDSARNPMTGKKWW 2220
             +F   +PLG +G  W+K  LA+++G  K  L+    F +EN +NI DS  NP+ G +WW
Sbjct: 804  MLFAKGKPLGESGLRWLKVHLANVYGFDKASLQERQDFADENIENIRDSVNNPLNGNQWW 863

Query: 2221 MKADKPFSALAVCFEIKKILDYRMSGGKIED---YKCRLPIHQDGSCNGLQHYAGLAADE 2391
            ++A+ P+  LA CFE+   L+       +ED   Y   LPIHQDG+CNGLQHYA L  D 
Sbjct: 864  LQAEDPWQCLATCFELAAALE-------LEDPTKYVSHLPIHQDGTCNGLQHYAALGGDT 916

Query: 2392 TGGAAVNLIRLETKQDVYTKVLEIVKKKIEQDILEQNLGTVNLETAKFFLPILNRKLVKR 2571
             G   VNL+  +   DVY+ V ++V K IE D+ + N      E AK     + RK+VK+
Sbjct: 917  WGAQQVNLVPGDRPADVYSAVAKLVIKGIEDDLAKDN------EFAKAMHGKITRKVVKQ 970

Query: 2572 PVMTTVYGVTLAGASSQIMQTIKEIVEDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAKK 2751
             VMT VYGVT  GA  Q+++ I            +  + N T        L   SY+ + 
Sbjct: 971  TVMTNVYGVTYVGARKQVLKQI------------EAAYPNITAESGIEAALL-ASYVTQH 1017

Query: 2752 ILDSIDELFVHAKQIEKWLLQNTKRILTSYNIKTIDHL-------------------LNN 2874
            I  ++  +F  A  I+ WL +   R+  +   + +D                     L  
Sbjct: 1018 IFRAMSTMFKGAHDIQNWLGEIGGRVCRALTPEQLDEFERSERSPHGDGTASGENITLAG 1077

Query: 2875 NPSSF-----ETIFTTPMSFFPMSWISPCGLPVIQAYRKIPTSRFNGAIGKTTWNNSNKL 3039
            NP        + I     S   + W +P  +PV+Q YRK  T   +  +         + 
Sbjct: 1078 NPRKSSAHKNDEILNNFQS--TIIWTTPLRMPVVQPYRKHGTKTVSTCMQDLVMTIPERS 1135

Query: 3040 SPMDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSYWTHPNNVEKLSKIL 3219
             P++RRK      PNFIHSLDA+H+ ++    ++ GLTF+A+HDS+WTH ++++ ++ +L
Sbjct: 1136 DPVNRRKQLQAFPPNFIHSLDASHMILSALHCDELGLTFAAVHDSFWTHASDIDSMNAVL 1195

Query: 3220 REQFVELYSMDYLKYVRQDFINQVKNSYQLVYFKKKDYPG-------LANKIAEIRKHYP 3378
            R+ F+ ++S D +  +  +F  + KNS  L   +             + NK+   ++   
Sbjct: 1196 RDAFIRIHSEDVIGRLAAEFQARYKNSLYLAKIETGTKVAQEIQRWRVRNKLGPRKELLL 1255

Query: 3379 ERKKPHKLAFELREMTEQGEEHIM-RKLYQRY 3471
            E+++   L     E  E+G++ I    LY+ Y
Sbjct: 1256 EKERQELLRSSNPEDVERGKKMISPASLYELY 1287



 Score = 34.7 bits (78), Expect = 8.8
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = +1

Query: 3547 KCKGMMEIFVPVLIINVPPKGNLDISKVLDSPYFFS 3654
            K K  ++I++P++   +P KG+ D+  + DS YFFS
Sbjct: 1387 KQKHYLDIWLPLVFPPIPEKGDFDVRSLKDSTYFFS 1422


>Q8VWF8|RPOT2|RPO2_NICSY (SP: Nicotiana sylvestris (Wood tobacco))
            DNA-directed RNA polymerase 2, chloroplast/mitochondrial
            precursor (EC 2.7.7.6) (T7 bacteriophage-type single
            subunit RNA polymerase 2) (NsRpoT-B).
          Length = 1020

 Score =  307 bits (787), Expect = 5e-82
 Identities = 221/708 (31%), Positives = 335/708 (47%), Gaps = 35/708 (4%)
 Frame = +1

Query: 1300 DAYIKLTHQLVKLIIENCKVPITSKQMEQLQNSLKLENKEIADQFLISSGGNDDEYLAFC 1479
            DA  K+  +L+ L+++   +       +   N L ++  +I   F+ S            
Sbjct: 369  DARAKVGSRLIDLLLQTAYI-------QPPANQLAVDPPDIPPAFVHS-------VRTVA 414

Query: 1480 KETKRITNTKNKTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIK 1659
            KETK    + ++ Y I++    +   L+       + Y+PML PP  W     GG+L + 
Sbjct: 415  KETK----SASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLP 470

Query: 1660 TSFVSTNDSIQVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNK--------- 1812
            +  + T+ + Q     +   R QL   +  LD +GNT W IN  +L V ++         
Sbjct: 471  SYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLA 530

Query: 1813 -LMGNPDGFLSIPPLVPDETLPQKTKTELKSL----------RITFEIMNKLANAFGENG 1959
             L+   D  L   P   DE L  K + ++KS+          R   E+   +A    +  
Sbjct: 531  DLVDRDDAPLPEEPDTEDEALLPKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEE 590

Query: 1960 DLLYHCYSLDFRGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFG- 2133
               Y  +++DFRGR YP  P L H G D+ R +  F    PLG +G  W+K  LA+LF  
Sbjct: 591  SFFYP-HNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFAG 649

Query: 2134 --QKNCLE----FYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMS 2295
              +K  LE    F E + D+I DS+  P+ G++WW+ A+ PF  LAVC  + + +     
Sbjct: 650  GVEKLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAV----R 705

Query: 2296 GGKIEDYKCRLPIHQDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDVYT----KVLEI 2463
                E     +P+HQDGSCNGLQHYA L  D+ G AAVNL+  E   + Y+    +VL+I
Sbjct: 706  SSSPETSVSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPAEAYSGIAARVLDI 765

Query: 2464 VKKKIEQDILEQNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKE 2643
            +K+  ++D  E      +   A+  +  ++RKLVK+ VMT+VYGVT  GA  QI + +KE
Sbjct: 766  MKRDAQRDPAE----FPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 821

Query: 2644 ---IVEDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQ 2814
               I +D                   S       Y AK  L ++ E+F  A+ I  WL +
Sbjct: 822  RGAIADD-------------------SELFGAACYAAKVTLTALGEMFEAARSIMTWLGE 862

Query: 2815 NTKRILTSYNIKTIDHLLNNNPSSFETIFTTPMSFFPMSWISPCGLPVIQAYRKIPTSRF 2994
              K I+ S N                          P+ W +P GLPV+Q YRKI     
Sbjct: 863  CAK-IIASEN-------------------------EPVRWTTPLGLPVVQPYRKIGRHLI 896

Query: 2995 NGAIGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDS 3174
              ++   T     +   + R++      PNFIHSLD +H+ MT  +  +AGL F+ +HDS
Sbjct: 897  KTSLQILTLQRETEKVMVKRQR--TAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVHDS 954

Query: 3175 YWTHPNNVEKLSKILREQFVELYSMDYLKYVRQDFINQVKNSYQLVYF 3318
            YWTH  +V+KL++ILRE+FVELY    L+ + + F    + SY  + F
Sbjct: 955  YWTHACDVDKLNRILREKFVELYEAPILEKLLESF----QTSYPTLLF 998


>Q84LK6|RPOT1|Q84LK6 (TrEMBL: Oryza sativa (japonica cultivar-group))
            RpoT1.
          Length = 1017

 Score =  306 bits (785), Expect = 9e-82
 Identities = 211/694 (30%), Positives = 320/694 (46%), Gaps = 34/694 (4%)
 Frame = +1

Query: 1300 DAYIKLTHQLVKLIIENCKVPITSKQMEQLQNSLKLENKEIADQFLISSGGNDDEYLAFC 1479
            DA+ K+  +L++L+IE   +   + Q                     S+ G  D   AF 
Sbjct: 366  DAHAKVGSRLIELMIETAYIQPPASQ---------------------SADGPPDIRPAFT 404

Query: 1480 KETKRITNTKNKT---YIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYL 1650
             E + +   + K+   Y ++K  P +   L        + Y+PML PP  W     G +L
Sbjct: 405  HEMRTVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHL 464

Query: 1651 TIKTSFVSTNDSIQVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLMGNPD 1830
             + +  + T+ + Q     R   R Q+ + +  L+ +G+T W +N  +L + +++  +  
Sbjct: 465  FLPSYVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGG 524

Query: 1831 GFLSIPPLVPDETLPQKTKTE----LKSLRITF---------------EIMNKLANAFG- 1950
                +     D  LP+K  TE    LK  R T                ++  KLA A   
Sbjct: 525  RLADLVDRT-DVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKM 583

Query: 1951 ENGDLLYHCYSLDFRGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASL 2127
            ++ D  Y+ ++LDFRGR YP  P L H G DL R +  F    PLG +G  W+K  LA+L
Sbjct: 584  KDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANL 643

Query: 2128 FG-------QKNCLEFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDY 2286
            +            + F E + ++I DSA  P+ GK+WW+ A+ PF  LAVC  + + L  
Sbjct: 644  YAGGVDKLSYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEAL-- 701

Query: 2287 RMSGGKIEDYKCRLPIHQDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDVYTKVLEIV 2466
                   E     +P+HQDGSCNGLQHYA L  D+ G  AVNL+  E   DVYT +   V
Sbjct: 702  --RSPSPETMISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRV 759

Query: 2467 KKKIEQDILEQNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKE- 2643
             + ++ D L+      +   A+  L  ++RKLVK+ VMT+VYGVT  GA  QI + +KE 
Sbjct: 760  VEIMKNDALKDPATDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKER 819

Query: 2644 --IVEDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQN 2817
              I +D                   S   + + Y AK  L ++ E+F  A+ I  WL   
Sbjct: 820  DMICDD-------------------SELFSASCYAAKVTLTALGEMFQAARSIMNWLGDC 860

Query: 2818 TKRILTSYNIKTIDHLLNNNPSSFETIFTTPMSFFPMSWISPCGLPVIQAYRKIPTSRFN 2997
             K I                               P+ W +P GLPV+Q YRK+      
Sbjct: 861  AKVIACENE--------------------------PVRWTTPLGLPVVQPYRKLGRHLIK 894

Query: 2998 GAIGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSY 3177
             ++   T         + R++      PNF+HSLD +H+ MT  +  + GL F+ +HDSY
Sbjct: 895  TSLQVLTLQRETDKVMVKRQR--TAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSY 952

Query: 3178 WTHPNNVEKLSKILREQFVELYSMDYLKYVRQDF 3279
            WTH  +V+ ++KILRE+FVELY    L+ + + F
Sbjct: 953  WTHACDVDTMNKILREKFVELYDTPILENLLESF 986


>Q95NZ8|RPMA|Q95NZ8 (TrEMBL: Dictyostelium discoideum (Slime mold))
            T3/T7 bacteriophage-like mitochondrial RNA polymerase
            (DNA-dependent RNA polymerase RpmA).
          Length = 950

 Score =  305 bits (782), Expect = 2e-81
 Identities = 208/620 (33%), Positives = 297/620 (47%), Gaps = 30/620 (4%)
 Frame = +1

Query: 1597 PMLHPPKPWVNPQSGGYLTIKTSFVSTNDSIQVELLNRAGVRGQLDNAYSCLDQMGNTAW 1776
            PM+  P PW+ P  G YL  K   + TN S    +  R  V   +   Y  L+ +G T W
Sbjct: 386  PMVIKPLPWITPTEGPYLHYKVPIMRTNGSA---MQLRTLVDSDMSLIYRALNILGETPW 442

Query: 1777 AINPLMLDVFNKLMGNPDGFLSIP-------PLVPDETL------------PQKTKT--- 1890
             IN  + +V  +   N      IP       P + D+ L             Q+ K+   
Sbjct: 443  VINRDLYNVILEAWANGGNIGDIPKRTDFEYPEISDDMLFDHEARKELYKKEQRIKSLNF 502

Query: 1891 ELKSLRITFEIMNKLANAFGENGDLLYHCYSLDFRGRIYPFSP-LTHYGGDLARSLFMFW 2067
             L SLR       ++A  F ++   LY  +++DFRGR YP  P L H G D  RSL  F 
Sbjct: 503  NLHSLRCDTNYKLEVARKFLDH--TLYFPHNIDFRGRSYPIPPHLNHLGSDFCRSLLKFE 560

Query: 2068 YSEPLGPNGFYWIKYQLASLFGQKNC-----LEFYEENYDNIIDSARNPMTGKKWWMKAD 2232
             S PLG  G  W+K  +A+L+G         L F E N +NI DS  +P+ G KWW+KAD
Sbjct: 561  KSLPLGEKGLEWLKIHVANLYGVDKIPLNERLAFTERNMENIFDSVDSPLNGNKWWLKAD 620

Query: 2233 KPFSALAVCFEIKKILDYRMSGGKIEDYKCRLPIHQDGSCNGLQHYAGLAADETGGAAVN 2412
             P+  LA C E+ K +      GK  ++   LPIHQDG+CNGLQHYA L  D  G   VN
Sbjct: 621  NPWQTLAACMELTKAI----RSGKPAEFLSNLPIHQDGTCNGLQHYAALGGDVWGAEKVN 676

Query: 2413 LIRLETKQDVYTKVLEIVKKKIEQDILEQNLGTVNLETAKFFLPILNRKLVKRPVMTTVY 2592
            L+  +  QDVY+ V ++V++ +E+D    +      E A+FFL  ++RKLVK+ VMT+VY
Sbjct: 677  LLPSDCPQDVYSSVAQLVEQIVEEDAKNGD------EIAQFFLGKVDRKLVKQTVMTSVY 730

Query: 2593 GVTLAGASSQIMQTIKEIVEDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKILDSIDE 2772
            GVT  GA  QI   I E   D              L   +      ++Y+ K    S++ 
Sbjct: 731  GVTYIGAREQIENAILEKFSD--------------LDLDEDFIFKSSTYITKNTFASLNN 776

Query: 2773 LFVHAKQIEKWLLQNTKRILTSYNIKTIDHLLNNNPSSFETIFTTPMSFFPMSWISPCGL 2952
            +FV A+ I KW+      I  S +  T                          W +P GL
Sbjct: 777  MFVGARSIMKWMSDCATLIAKSGHCVT--------------------------WNTPLGL 810

Query: 2953 PVIQAYRKIPTSRFNGAIGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLDAAHLFMTCDS 3132
            PV+Q Y+K                +++ L  +D  +      PNFIHSLD+ H+F+T  +
Sbjct: 811  PVVQPYKKGGKYNIRTLECDFIVVHNDDLLQVDSNRQRSAFPPNFIHSLDSTHMFLTAMT 870

Query: 3133 ANKAGLTFSAIHDSYWTHPNNVEKLSKILREQFVELYSMDYLKYVRQDFINQVKNSYQLV 3312
                G+T+S++HDSYWTH + V++++ ILR +FVEL+    L+ + + F  QV+  Y  +
Sbjct: 871  CYDQGITYSSVHDSYWTHASTVDRMNDILRNEFVELHKQPILERLLEWF--QVR--YPDI 926

Query: 3313 YFKKKDYPGL--ANKIAEIR 3366
             F K    G    NK+ E R
Sbjct: 927  KFPKLPKKGELDINKVKESR 946


>Q8L6J6|RPOT3-TOM|Q8L6J6 (TrEMBL: Nicotiana tabacum (Common tobacco))
            Chloroplast RNA polymerase.
          Length = 977

 Score =  305 bits (782), Expect = 2e-81
 Identities = 208/632 (32%), Positives = 299/632 (47%), Gaps = 30/632 (4%)
 Frame = +1

Query: 1513 KTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSIQ 1692
            K Y +++  P +   +        + Y+PML PPK W     GGYL + +  + T+ S +
Sbjct: 379  KKYGVIECDPLVVAGVDRTVKQMMIPYVPMLVPPKKWRGYDKGGYLFLPSYLMRTHGSRR 438

Query: 1693 VELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLM---GNPDGFLS-----IP 1848
             +   R     Q+   Y  LD +G+T W +N  +L+V   +    GN  G +      IP
Sbjct: 439  QQDAVRGVPTKQMQQVYEALDTLGSTKWRVNKRILNVVESIWAGGGNIAGLVDRKDVPIP 498

Query: 1849 PLVPDETLPQ------------KTKTELKSLRITFEIMNKLANAFGENGDLLYHCYSLDF 1992
             L   + + +            K   EL S R   E+   +A    +  +  Y+ ++LDF
Sbjct: 499  ELSNSDDIMEVKKWKWKVRKSKKINQELHSQRCDTELKLSVARKLKDE-EGFYYPHNLDF 557

Query: 1993 RGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFG---QKNC----L 2148
            RGR YP  P L H   DL R +  F    PLG +G  W+K  LASL+    +K C    L
Sbjct: 558  RGRAYPMHPHLNHLSSDLCRGILEFAEGRPLGKSGLRWLKIHLASLYAGGVEKLCYDARL 617

Query: 2149 EFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGKIEDYKCRL 2328
             F E +  +I+DSA NP+ G +WW+ A+ PF  LA C  + + L        I      L
Sbjct: 618  AFVENHIHDILDSANNPLNGNRWWLNAEDPFQCLAACINLSEALKSSSPHTVIS----HL 673

Query: 2329 PIHQDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDVYTKVLEIVKKKIEQDILEQNLG 2508
            PIHQDGSCNGLQHYA L  D    AAVNL+  E   DVYT++   V   I  D ++    
Sbjct: 674  PIHQDGSCNGLQHYAALGRDSMEAAAVNLVAGEKPADVYTEIALRVDHIIRGDSIKDPAI 733

Query: 2509 TVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKE--IVEDHRTNPSKTT 2682
              N   AK  +  ++RKLVK+ VMT+VYGVT  GA  QI + ++E  +++D R       
Sbjct: 734  DPNALLAKLLIDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLEEKGLIDDDR------- 786

Query: 2683 FSNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQNTKRILTSYNIKTIDH 2862
                       +  T + Y AK  L ++ ELF  A+    WL    K I           
Sbjct: 787  -----------LLFTASCYAAKVTLAALGELFQAARGTMTWLGDCAKVI----------- 824

Query: 2863 LLNNNPSSFETIFTTPMSFFPMSWISPCGLPVIQAYRKIPTSRFNGAIGKTTWNNSNKLS 3042
             L N                P+ W +P GLPV+Q Y K  T R              +  
Sbjct: 825  ALENQ---------------PVRWTTPLGLPVVQPYFK--TQRHVIRTSLQILALQREGD 867

Query: 3043 PMDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSYWTHPNNVEKLSKILR 3222
             ++ RK      PNF+HSLD +H+ MT  +   AGL F+ +HDS+WTH  +V+++++ILR
Sbjct: 868  AVEVRKQRTAFPPNFVHSLDGSHMMMTAVACRDAGLQFAGVHDSFWTHACDVDQMNRILR 927

Query: 3223 EQFVELYSMDYLKYVRQDFINQVKNSYQLVYF 3318
            E+FVELYS+  L    +D +   + SY  + F
Sbjct: 928  EKFVELYSLPIL----EDLLENFQKSYPALTF 955


>Q9MQV1||Q9MQV1 (TrEMBL: Triticum aestivum (Wheat)) Single-subunit RNA
            polymerase G.
          Length = 1005

 Score =  305 bits (780), Expect = 3e-81
 Identities = 210/697 (30%), Positives = 319/697 (45%), Gaps = 37/697 (5%)
 Frame = +1

Query: 1300 DAYIKLTHQLVKLIIENCKVPITSKQMEQLQNSLKLENKEIADQFLISSGGNDDEYL-AF 1476
            DA+ K+  +L++L IE   +   + Q                      SG +  E   AF
Sbjct: 355  DAHAKVGSRLIELFIETAHIQPPASQ----------------------SGDSTPEIRPAF 392

Query: 1477 CKETKRITNTKNKT--YIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYL 1650
              E + +   + K+  Y ++K  P +   L        + Y+PML PP  W     G +L
Sbjct: 393  THEMRTVAREQRKSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDKGAHL 452

Query: 1651 TIKTSFVSTNDSIQVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNK------ 1812
             + +  + T+ + Q     +   + Q+   +  LD +G+T W +N  +L + ++      
Sbjct: 453  FLPSYVMRTHGARQQREAVKKAPKEQMQTIFEALDNLGSTKWRVNKEVLSIVDRIWSSGG 512

Query: 1813 ----LMGNPDGFLSIPPLVPDET----------LPQKTKTELKSLRITFEIMNKLANAFG 1950
                L+   D  L   P   DE             +K  +E  S R   E+   +A    
Sbjct: 513  RLADLVDRADVSLPEKPDTEDEAELKKWRWSMRSAEKENSERHSQRCDVELKLAVARKMK 572

Query: 1951 ENGDLLYHCYSLDFRGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASL 2127
            E     Y+ ++LDFRGR YP  P L H G DL R +  F    PLG +G  W+K  LA+L
Sbjct: 573  EEAGF-YYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFSEGRPLGESGLRWLKIHLANL 631

Query: 2128 FG-------QKNCLEFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDY 2286
            +G           + F E + D+I DSA  P+ GK+WW++A+ PF  LAVC ++ + L  
Sbjct: 632  YGGGVDKLSYDGRIAFTENHLDDIFDSANRPLEGKRWWLEAEDPFQCLAVCMDLNEAL-- 689

Query: 2287 RMSGGKIEDYKCRLPIHQDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDVYT----KV 2454
                   E     +P+HQDGSCNGLQHYA L  D+ G  AVNL+  E   DVY+    +V
Sbjct: 690  --RSPSPETVISHIPVHQDGSCNGLQHYAALGRDKLGAVAVNLVSGEKPADVYSGIAARV 747

Query: 2455 LEIVKKKIEQDILEQNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQT 2634
            +EI+K+  ++D  +      +   A+  +  ++RKLVK+ VMT+VYGVT  GA  QI + 
Sbjct: 748  VEIMKRDAQKDPAKD----ADAARARLLVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRR 803

Query: 2635 IKE--IVEDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWL 2808
            +KE  ++ D                   S     + Y AK  L ++ E+F  A+ I  WL
Sbjct: 804  LKERGVIAD------------------DSELFGASCYAAKVTLTALGEMFEAARSIMTWL 845

Query: 2809 LQNTKRILTSYNIKTIDHLLNNNPSSFETIFTTPMSFFPMSWISPCGLPVIQAYRKIPTS 2988
                K I                               P+ W +P GLPV+Q YRK+   
Sbjct: 846  GDCAKVIACENE--------------------------PVRWTTPLGLPVVQPYRKLGRH 879

Query: 2989 RFNGAIGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIH 3168
                ++   T         + R++      PNF+HSLD +H+ MT  +  K GL F+ +H
Sbjct: 880  LIKTSLQVLTLQRETDKVMVKRQR--TAFPPNFVHSLDGSHMMMTAVACKKQGLYFAGVH 937

Query: 3169 DSYWTHPNNVEKLSKILREQFVELYSMDYLKYVRQDF 3279
            DSYWTH  +V+ ++KILRE+FVELY    L+ + + F
Sbjct: 938  DSYWTHACDVDTMNKILREKFVELYDAPILENLLESF 974


>Q9LFV6|F14F8_80|Q9LFV6 (TrEMBL: Arabidopsis thaliana (Mouse-ear
            cress)) DNA-directed RNA polymerase (Mitochondrial)
            (Phage-type RNA polymerase rpoT2).
          Length = 1011

 Score =  304 bits (778), Expect = 6e-81
 Identities = 218/690 (31%), Positives = 334/690 (48%), Gaps = 36/690 (5%)
 Frame = +1

Query: 1318 THQLVKLIIENCKVPITSKQMEQLQNSLKLENKEIADQFLISSGGNDDEYLAFCKETKRI 1497
            +H   K  I + +  + S+ +E L  +  +++   ADQ         D   AF    K  
Sbjct: 351  SHDYTKPWIADVRAKVGSRLIELLVRTAYIQSP--ADQ---QDNDLPDVRPAFVHTFKVA 405

Query: 1498 TNTKN--KTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFV 1671
              + N  + Y +++  P +   L+       + Y+PML PP  W     G YL + +  +
Sbjct: 406  KGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYDKGAYLFLTSYIM 465

Query: 1672 STNDSIQVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLMGN--------- 1824
             T+ + Q     ++  +GQL   +  LD +G+T W +N  +L V +++  +         
Sbjct: 466  KTHGAKQQREALKSAPKGQLQPVFEALDTLGSTKWRVNKRVLTVVDRIWSSGGCVADMVD 525

Query: 1825 -PDGFLSIPPLVPDETLPQKTKTELKSL----------RITFEIMNKLANAFGENGDLLY 1971
              D  L   P   DE + +K K E+KS           R   E+   +A    +  +  Y
Sbjct: 526  RSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKLSVARKMKDE-EAFY 584

Query: 1972 HCYSLDFRGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFGQ---- 2136
            + +++DFRGR YP  P L H G DL R +  F    P+G +G  W+K  LA+L+      
Sbjct: 585  YPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPMGISGLRWLKIHLANLYAGGVDK 644

Query: 2137 ---KNCLEFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGKI 2307
                  L F E + D+I DSA  P+ G +WW++A+ PF  LAVC  + + L         
Sbjct: 645  LSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQAEDPFQCLAVCISLTEAL----RSPSP 700

Query: 2308 EDYKCRLPIHQDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDVY----TKVLEIVKKK 2475
            E     +PIHQDGSCNGLQHYA L  D  G  AVNL+  E   DVY    T+VL+I+++ 
Sbjct: 701  ETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYSGIATRVLDIMRRD 760

Query: 2476 IEQD--ILEQNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKEIV 2649
             ++D  +  + L       A+  L  ++RKLVK+ VMT+VYGVT  GA  QI + +KE  
Sbjct: 761  ADRDPEVFPEAL------RARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE-- 812

Query: 2650 EDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQNTKRI 2829
                    ++ F +E     K V      Y AK  L +IDE+F  A+ I +W  +  K I
Sbjct: 813  --------RSDFGDE-----KEV-FGAACYAAKVTLAAIDEMFQAARAIMRWFGECAK-I 857

Query: 2830 LTSYNIKTIDHLLNNNPSSFETIFTTPMSFFPMSWISPCGLPVIQAYRKIPTSRFNGAIG 3009
            + S N               ET+           W +P GLPV+Q Y ++ T     ++ 
Sbjct: 858  IASEN---------------ETV----------RWTTPLGLPVVQPYHQMGTKLVKTSL- 891

Query: 3010 KTTWNNSNKLSPMDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSYWTHP 3189
              T +  ++   +  R+      PNFIHSLD +H+ MT  +  +AG+ F+ +HDS+WTH 
Sbjct: 892  -QTLSLQHETDQVIVRRQRTAFPPNFIHSLDGSHMMMTAVACKRAGVCFAGVHDSFWTHA 950

Query: 3190 NNVEKLSKILREQFVELYSMDYLKYVRQDF 3279
             +V+KL+ ILRE+FVELYS   L+ + + F
Sbjct: 951  CDVDKLNIILREKFVELYSQPILENLLESF 980


>O23644||O23644 (TrEMBL: Arabidopsis thaliana (Mouse-ear cress))
            DNA-directed RNA polymerase precursor.
          Length = 1011

 Score =  303 bits (777), Expect = 8e-81
 Identities = 218/690 (31%), Positives = 334/690 (48%), Gaps = 36/690 (5%)
 Frame = +1

Query: 1318 THQLVKLIIENCKVPITSKQMEQLQNSLKLENKEIADQFLISSGGNDDEYLAFCKETKRI 1497
            +H   K  I + +  + S+ +E L  +  +++   ADQ         D   AF    K  
Sbjct: 351  SHDYTKPWIADVRAKVGSRLIELLVRTAYIQSP--ADQ---QDNDLPDVRPAFVHTFKVA 405

Query: 1498 TNTKN--KTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFV 1671
              + N  + Y +++  P +   L+       + Y+PML PP  W     G YL + +  +
Sbjct: 406  KGSMNSGRKYGVIECDPLVRKGLEKSGRYAVMPYMPMLVPPLKWSGYDKGAYLFLTSYIM 465

Query: 1672 STNDSIQVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLMGN--------- 1824
             T+ + Q     ++  +GQL   +  LD +G+T W +N  +L V +++  +         
Sbjct: 466  RTHGAKQQREALKSAPKGQLQPVFEALDTLGSTKWRVNKRVLTVVDRIWSSGGCVADMVD 525

Query: 1825 -PDGFLSIPPLVPDETLPQKTKTELKSL----------RITFEIMNKLANAFGENGDLLY 1971
              D  L   P   DE + +K K E+KS           R   E+   +A    +  +  Y
Sbjct: 526  RSDVPLPEKPDTEDEGILKKWKWEVKSAKKVNSERHSQRCDTELKLSVARKMKDE-EAFY 584

Query: 1972 HCYSLDFRGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFGQ---- 2136
            + +++DFRGR YP  P L H G DL R +  F    P+G +G  W+K  LA+L+      
Sbjct: 585  YPHNMDFRGRAYPMPPHLNHLGSDLCRGVLEFAEGRPMGISGLRWLKIHLANLYAGGVDK 644

Query: 2137 ---KNCLEFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGKI 2307
                  L F E + D+I DSA  P+ G +WW++A+ PF  LAVC  + + L         
Sbjct: 645  LSLDGRLAFTENHLDDIFDSADRPLEGSRWWLQAEDPFQCLAVCISLTEAL----RSPSP 700

Query: 2308 EDYKCRLPIHQDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDVY----TKVLEIVKKK 2475
            E     +PIHQDGSCNGLQHYA L  D  G  AVNL+  E   DVY    T+VL+I+++ 
Sbjct: 701  ETVLSHIPIHQDGSCNGLQHYAALGRDTLGAEAVNLVAGEKPADVYSEIATRVLDIMRRD 760

Query: 2476 IEQD--ILEQNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKEIV 2649
             ++D  +  + L       A+  L  ++RKLVK+ VMT+VYGVT  GA  QI + +KE  
Sbjct: 761  ADRDPEVFPEAL------RARKLLNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE-- 812

Query: 2650 EDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQNTKRI 2829
                    ++ F +E     K V      Y AK  L +IDE+F  A+ I +W  +  K I
Sbjct: 813  --------RSDFGDE-----KEV-FGAACYAAKVTLAAIDEMFQAARAIMRWFGECAK-I 857

Query: 2830 LTSYNIKTIDHLLNNNPSSFETIFTTPMSFFPMSWISPCGLPVIQAYRKIPTSRFNGAIG 3009
            + S N               ET+           W +P GLPV+Q Y ++ T     ++ 
Sbjct: 858  IASEN---------------ETV----------RWTTPLGLPVVQPYHQMGTKLVKTSL- 891

Query: 3010 KTTWNNSNKLSPMDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSYWTHP 3189
              T +  ++   +  R+      PNFIHSLD +H+ MT  +  +AG+ F+ +HDS+WTH 
Sbjct: 892  -QTLSLQHETDQVIVRRQRTAFPPNFIHSLDGSHMMMTAVACKRAGVCFAGVHDSFWTHA 950

Query: 3190 NNVEKLSKILREQFVELYSMDYLKYVRQDF 3279
             +V+KL+ ILRE+FVELYS   L+ + + F
Sbjct: 951  CDVDKLNIILREKFVELYSQPILENLLESF 980


>Q84LK5|RPOT2|Q84LK5 (TrEMBL: Oryza sativa (japonica cultivar-group))
            RpoT2.
          Length = 953

 Score =  303 bits (775), Expect = 1e-80
 Identities = 202/696 (29%), Positives = 325/696 (46%), Gaps = 36/696 (5%)
 Frame = +1

Query: 1300 DAYIKLTHQLVKLIIENCKVPITSKQMEQLQNSLKLENKEIADQFLISSGGNDDEYLAFC 1479
            ++ +KL  +L++L++++  V   + Q  +    ++   K +  Q ++ +G          
Sbjct: 302  ESQVKLGTRLIELLLDSAFVQSPADQTPESSPDIRPAFKHVLRQPIVENG---------- 351

Query: 1480 KETKRITNTKNKTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIK 1659
                       K + +++  P +    +S      + YLPML  PK W    +GGYL + 
Sbjct: 352  --------RLKKKHWVIECDPLVHEGFESTARHVEIPYLPMLVTPKKWKGYDTGGYLFLP 403

Query: 1660 TSFVSTNDSIQVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLMGNPDGFL 1839
            +  + T+     +   ++  R QL   +  LD +G+T W +N  + +    +     G  
Sbjct: 404  SYIMRTHGVKDQKEAIKSVPRKQLRKVFEALDTLGSTKWRVNRRVHNAVETIWSRGGG-- 461

Query: 1840 SIPPLVPDETLP-----------------------QKTKTELKSLRITFEIMNKLANAFG 1950
             I  LV  E +P                       +K   EL + R   E+   +A    
Sbjct: 462  -IAGLVDKENIPLPERPETEDPDEIQKWKWSLKKAKKANRELHAERCDTELKLSVARKMR 520

Query: 1951 ENGDLLYHCYSLDFRGRIYPF-SPLTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASL 2127
            E  D  Y+ ++LDFRGR YP  + L+H G DL R +  +    PLG +G  W+K  LA+ 
Sbjct: 521  EE-DGFYYPHNLDFRGRAYPMHAHLSHLGSDLCRGVLEYAEGRPLGKSGLRWLKIHLANK 579

Query: 2128 FG-------QKNCLEFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDY 2286
            +G        ++ + F E    +I DSA NP+ G  WWM A+ PF  LA C ++   L  
Sbjct: 580  YGGGIEKLSHEDKVAFVENQLPDIFDSATNPVDGNCWWMNAEDPFQCLAACMDLSDAL-- 637

Query: 2287 RMSGGKIEDYKC---RLPIHQDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDVYTKVL 2457
                 K    +C    LPIHQDGSCNGLQHYA L  D  G AAVNL+  +   D+Y+++ 
Sbjct: 638  -----KSSSPQCAVSHLPIHQDGSCNGLQHYAALGRDYMGAAAVNLVPGDKPADIYSEIA 692

Query: 2458 EIVKKKIEQDILEQNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTI 2637
              V   + +D +E          A+  +  ++RKLVK+ VMT+VYGVT  GA  QI + +
Sbjct: 693  ARVLDVVREDSMEDPATNPTASLARVLVDQVDRKLVKQTVMTSVYGVTYIGARQQITKRL 752

Query: 2638 KE--IVEDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLL 2811
            +E  ++ D           ++ L+++       + Y  +  LD++ ++F  A+ I  WL 
Sbjct: 753  QEKGLITD-----------DKLLYEV-------SCYATRVTLDALGQMFQSARGIMAWLG 794

Query: 2812 QNTKRILTSYNIKTIDHLLNNNPSSFETIFTTPMSFFPMSWISPCGLPVIQAYRKIPTSR 2991
               K I +  +                          P+ W SP GLPV+Q Y+K     
Sbjct: 795  DCAKMIASENH--------------------------PVKWTSPVGLPVVQPYKKYKNYM 828

Query: 2992 FNGAIGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHD 3171
               ++             + R+K      PNF+HSLD++H+ MT  +  KAGL F+ +HD
Sbjct: 829  IRTSLQCLALRREGDAIALQRQK--AAFPPNFVHSLDSSHMMMTAIACKKAGLHFAGVHD 886

Query: 3172 SYWTHPNNVEKLSKILREQFVELYSMDYLKYVRQDF 3279
            S+W H  +V+K+++ILREQFVELYSM  L+ + ++F
Sbjct: 887  SFWVHACDVDKMNQILREQFVELYSMPILENLLKEF 922


>Q9PTG7|MTRPO|Q9PTG7 (TrEMBL: Xenopus laevis (African clawed frog))
            RNA polymerase precursor.
          Length = 1235

 Score =  302 bits (773), Expect = 2e-80
 Identities = 203/622 (32%), Positives = 308/622 (49%), Gaps = 39/622 (6%)
 Frame = +1

Query: 1525 IVKMHPY---IELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIKTSFVSTND-SIQ 1692
            ++K HP    I+L  +   L      +PML PP PW++P+ G YL      +   + ++Q
Sbjct: 621  LIKPHPIFSQIQLDARESCLTFESSVMPMLCPPVPWMSPRFGAYLLSPAKLMRCMEGAVQ 680

Query: 1693 VELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDV----FNKLMGNPDGFLSIPPLVP 1860
             +LL      GQL      L+Q+G  AW IN  +LD+    FN L GN    L IPP + 
Sbjct: 681  HQLLLEKSPPGQLYPVLDSLNQLGMCAWRINQTILDIIVSIFN-LKGNEK--LDIPPPIS 737

Query: 1861 DET-LPQ----------------------KTKTELKSLRITFEIMNKLANAFGENGDLLY 1971
            +   +P+                      K  +E+ SLR+  + + KL+ A      + +
Sbjct: 738  EAPKMPEQPHGDVNSKDKLMHQRELARCRKKSSEMHSLRM--DALYKLSIASHLRDKIFW 795

Query: 1972 HCYSLDFRGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFGQK--N 2142
              +++DFRGR YP  P   H G D+ R+L +F    PLGP G  W+K  L +L G K  N
Sbjct: 796  FPHNMDFRGRTYPCPPYFNHLGSDVTRALLLFAEGRPLGPKGLEWLKIHLINLTGLKKRN 855

Query: 2143 CL----EFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMSGGKIE 2310
             L    E+ +   D+I+DSA NP+ GK+WWM+AD+P+ ALA C EI K            
Sbjct: 856  SLKERKEYADAIMDDILDSADNPLKGKRWWMEADEPWQALACCMEIAKA----SRSPDPT 911

Query: 2311 DYKCRLPIHQDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDVYTKVLEIVKKKIEQDI 2490
             Y    P+HQDGSCNGLQHYA L  DE G  +VNL+  +T QDVY+ V + V++  ++D 
Sbjct: 912  KYISHFPVHQDGSCNGLQHYAALGRDEIGAKSVNLMPCDTPQDVYSGVAQQVEEFCKRDA 971

Query: 2491 LEQNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKEIVEDHRTNP 2670
                     ++ A+     + RK+VK+ VMT VYGVT  G   QI + ++E+        
Sbjct: 972  QR------GVKIAQILDGFIGRKVVKQTVMTVVYGVTRYGGRLQIEKRLREM-------- 1017

Query: 2671 SKTTFSNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQNTKRILTSYNIK 2850
                F  E + +        + YL +++  S+ E+F   ++I+ WL ++ + I  S N  
Sbjct: 1018 --DNFPKEYVWEA-------SHYLVQQVFSSLKEMFSGTREIQLWLTESARMISKSGNT- 1067

Query: 2851 TIDHLLNNNPSSFETIFTTPMSFFPMSWISPCGLPVIQAYRKIPTSRFNGAIGKTTWNNS 3030
                                     + W +P GLP+IQ Y +     F+  +      +S
Sbjct: 1068 -------------------------VEWQTPLGLPIIQPYHRAKPVLFHSNLQVVNLQSS 1102

Query: 3031 NKLSPM-DRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSYWTHPNNVEKL 3207
            + ++   D  K +    PNFIHSLD+ H+ +T       GLTF ++HD +WTHP+ V+ +
Sbjct: 1103 HDVNERPDTMKQKNAFPPNFIHSLDSTHMMLTALHCYSHGLTFVSVHDCFWTHPDTVDVM 1162

Query: 3208 SKILREQFVELYSMDYLKYVRQ 3273
            +K+ REQFV L+S   L+ + Q
Sbjct: 1163 NKVCREQFVALHSQPILQNLSQ 1184


>O24600|RPOPT|RPOT_ARATH (SP: Arabidopsis thaliana (Mouse-ear cress))
            DNA-directed RNA polymerase, chloroplast precursor (EC
            2.7.7.6).
          Length = 993

 Score =  301 bits (770), Expect = 5e-80
 Identities = 199/599 (33%), Positives = 286/599 (47%), Gaps = 30/599 (5%)
 Frame = +1

Query: 1591 YLPMLHPPKPWVNPQSGGYLTIKTSFVSTNDSIQVELLNRAGVRGQLDNAYSCLDQMGNT 1770
            Y+PML PPK W     GGYL + +  + T+ S + +   +          +  LD +GNT
Sbjct: 421  YVPMLVPPKRWKGYDKGGYLFLPSYIMRTHGSKKQQDALKDISHKTAHRVFEALDTLGNT 480

Query: 1771 AWAINPLMLDVFNKLM---GNPDGFLS---IP-PLVPDETLPQ-------------KTKT 1890
             W +N  +LDV  +L    GN  G ++   +P P  P    P+             K   
Sbjct: 481  KWRVNRNILDVVERLWADGGNIAGLVNREDVPIPEKPSSEDPEELQSWKWSARKANKINR 540

Query: 1891 ELKSLRITFEIMNKLANAFGENGDLLYHCYSLDFRGRIYPFSP-LTHYGGDLARSLFMFW 2067
            E  SLR   E+   +A    +  +  Y+ ++LDFRGR YP  P L H   DL R    F 
Sbjct: 541  ERHSLRCDVELKLSVARKMKDE-EGFYYPHNLDFRGRAYPMHPHLNHLSSDLCRGTLEFA 599

Query: 2068 YSEPLGPNGFYWIKYQLASLFG-------QKNCLEFYEENYDNIIDSARNPMTGKKWWMK 2226
               PLG +G +W+K  LA+L+            L F E + D+I+DSA NP+ GK+WW+K
Sbjct: 600  EGRPLGKSGLHWLKIHLANLYAGGVEKLSHDARLAFVENHLDDIMDSAENPIHGKRWWLK 659

Query: 2227 ADKPFSALAVCFEIKKILDYRMSGGKIEDYKCRLPIHQDGSCNGLQHYAGLAADETGGAA 2406
            A+ PF  LA C     IL   +           LPIHQDGSCNGLQHYA L  D    AA
Sbjct: 660  AEDPFQCLAACV----ILTQALKSPSPYSVISHLPIHQDGSCNGLQHYAALGRDSFEAAA 715

Query: 2407 VNLIRLETKQDVYTKVLEIVKKKIEQDILEQNLGTVNLETAKFFLPILNRKLVKRPVMTT 2586
            VNL+  E   DVY+++   V + +++D  +          AK  +  ++RKLVK+ VMT+
Sbjct: 716  VNLVAGEKPADVYSEISRRVHEIMKKDSSKDPESNPTAALAKILITQVDRKLVKQTVMTS 775

Query: 2587 VYGVTLAGASSQIMQTIKE--IVEDHRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKILD 2760
            VYGVT  GA  QI + ++E  ++ D R                  +      Y AK  L 
Sbjct: 776  VYGVTYVGAREQIKRRLEEKGVITDER------------------MLFAAACYSAKVTLA 817

Query: 2761 SIDELFVHAKQIEKWLLQNTKRILTSYNIKTIDHLLNNNPSSFETIFTTPMSFFPMSWIS 2940
            ++ E+F  A+ I  W L +  +I+ S N                          P+ WI+
Sbjct: 818  ALGEIFEAARAIMSW-LGDCAKIIASDN-------------------------HPVRWIT 851

Query: 2941 PCGLPVIQAYRKIPTSRFNGAIGKTTWNNSNKLSPMDRRKHELGIAPNFIHSLDAAHLFM 3120
            P GLPV+Q Y +        ++           + +D RK      PNF+HSLD  H+ M
Sbjct: 852  PLGLPVVQPYCRSERHLIRTSLQVLALQREG--NTVDVRKQRTAFPPNFVHSLDGTHMMM 909

Query: 3121 TCDSANKAGLTFSAIHDSYWTHPNNVEKLSKILREQFVELYSMDYLKYVRQDFINQVKN 3297
            T  +  +AGL F+ +HDSYWTH  +V+ +++ILRE+FVELY+   L+ + Q F     N
Sbjct: 910  TAVACREAGLNFAGVHDSYWTHACDVDTMNRILREKFVELYNTPILEDLLQSFQESYPN 968


>O82725|RPOT|O82725 (TrEMBL: Zea mays (Maize)) DNA directed RNA
            polymerase (EC 2.7.7.6).
          Length = 952

 Score =  294 bits (752), Expect = 6e-78
 Identities = 205/688 (29%), Positives = 318/688 (46%), Gaps = 28/688 (4%)
 Frame = +1

Query: 1300 DAYIKLTHQLVKLIIENCKVPITSKQMEQLQNSLKLENKEIADQFLISSGGNDDEYLAFC 1479
            +A +KL  +L++L++++  V   + Q       ++   K +  Q +I +G          
Sbjct: 301  EAQVKLGSRLIELLLDSAFVQPPADQTPDSSPDIRPAFKHVLRQPIIENG---------- 350

Query: 1480 KETKRITNTKNKTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIK 1659
                     K K ++I   H  +    +S      + YLPML PPK W     GG+L + 
Sbjct: 351  -------RLKKKHWVIECDH-LVHEGFESTARHVDIPYLPMLVPPKKWKGYDKGGHLFLP 402

Query: 1660 TSFVSTNDSIQVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLMGNPDGFL 1839
            +  + T+     +    +  R QL   +  LD +G+T W +N  + DV   +     G  
Sbjct: 403  SYIMRTHGVKDQKDAINSVPRKQLRKVFEALDILGSTKWRVNRRVHDVVETIWSQGGGIA 462

Query: 1840 ------SIP-PLVPDETLP-------------QKTKTELKSLRITFEIMNKLANAFGENG 1959
                  +IP P  P+   P             +KT  EL + R   E+   +A    E  
Sbjct: 463  GLVDKANIPLPERPESEDPDEMQKWKWSLKKAKKTNRELHAERCDTELKLSVARKMREE- 521

Query: 1960 DLLYHCYSLDFRGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFG- 2133
            D  Y+ ++LDFRGR YP  P L+H G DL R +  +    PLG +G  W+K  LA+ +G 
Sbjct: 522  DGFYYPHNLDFRGRAYPMHPHLSHLGSDLCRGVLEYAEGRPLGKSGLCWLKIHLANKYGG 581

Query: 2134 ------QKNCLEFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMS 2295
                   +  L F E    +I DSA NP+ G  WW  A+ PF  LA C ++   L     
Sbjct: 582  GIEKLSHEGKLAFVENQLFDIFDSAANPVDGNCWWTNAEDPFQCLAACMDLSDALRSPSP 641

Query: 2296 GGKIEDYKCRLPIHQDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDVYTKVLEIVKKK 2475
               +      LPIHQDGSCNGLQHYA L  D  G  AVNL+  E   D+Y+++   V   
Sbjct: 642  YHAVS----HLPIHQDGSCNGLQHYAALGRDYMGAVAVNLVPGEKPADIYSEIASRVLNV 697

Query: 2476 IEQDILEQNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKEIVED 2655
            + +D ++          A+  +  ++RKLVK+ VMT+VYGVT  GA  QI + ++E    
Sbjct: 698  VCEDSMKDPATNPTASLARVLVDQVDRKLVKQTVMTSVYGVTYIGARQQITKRLQE---- 753

Query: 2656 HRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQNTKRILT 2835
                  K   +++ L  L  V    + Y  +  LD++ ++F  A+ I  WL    K I +
Sbjct: 754  ------KGLITDDKL--LYDV----SCYATRVTLDALGQMFQSARGIMAWLGDCAKMIAS 801

Query: 2836 SYNIKTIDHLLNNNPSSFETIFTTPMSFFPMSWISPCGLPVIQAYRKIPTSRFNGAIGKT 3015
                                         P+ W SP GLPV+Q Y+K        ++   
Sbjct: 802  KNQ--------------------------PVKWTSPVGLPVVQPYKKYKNYMIRTSLQCL 835

Query: 3016 TWNNSNKLSPMDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSYWTHPNN 3195
                      + R+K      PNF+HSLD++H+ MT  +  ++GL F+ +HDS+W H  +
Sbjct: 836  ALRREGDAIAIQRQK--AAFPPNFVHSLDSSHMMMTAIACKESGLHFAGVHDSFWVHACD 893

Query: 3196 VEKLSKILREQFVELYSMDYLKYVRQDF 3279
            V+++++ILR+QFVELYSM  L+ + ++F
Sbjct: 894  VDQMNQILRQQFVELYSMPILENLLEEF 921


>Q9SYW4|RPOT2|Q9SYW4 (TrEMBL: Zea mays (Maize)) T7-like RNA
            polymerase.
          Length = 952

 Score =  293 bits (751), Expect = 8e-78
 Identities = 205/688 (29%), Positives = 318/688 (46%), Gaps = 28/688 (4%)
 Frame = +1

Query: 1300 DAYIKLTHQLVKLIIENCKVPITSKQMEQLQNSLKLENKEIADQFLISSGGNDDEYLAFC 1479
            +A +KL  +L++L++++  V   + Q       ++   K +  Q +I +G          
Sbjct: 301  EAQVKLGSRLIELLLDSAFVQPPADQTPDSSPDIRPAFKHVLRQPIIENG---------- 350

Query: 1480 KETKRITNTKNKTYIIVKMHPYIELKLQSLKLGTHLHYLPMLHPPKPWVNPQSGGYLTIK 1659
                     K K ++I   H  +    +S      + YLPML PPK W     GG+L + 
Sbjct: 351  -------RLKKKHWVIECDH-LVHEGFESTARHVDIPYLPMLVPPKKWKGYDKGGHLFLP 402

Query: 1660 TSFVSTNDSIQVELLNRAGVRGQLDNAYSCLDQMGNTAWAINPLMLDVFNKLMGNPDGFL 1839
            +  + T+     +    +  R QL   +  LD +G+T W +N  + DV   +     G  
Sbjct: 403  SYIMRTHGVKDQKDAINSVPRKQLRKVFEALDILGSTKWRVNRRVHDVVETIWSQGGGIA 462

Query: 1840 ------SIP-PLVPDETLP-------------QKTKTELKSLRITFEIMNKLANAFGENG 1959
                  +IP P  P+   P             +KT  EL + R   E+   +A    E  
Sbjct: 463  GLVDKANIPLPERPESEDPDEMQKWKWSLKKAKKTNRELHAERCDTELKLSVARKMREE- 521

Query: 1960 DLLYHCYSLDFRGRIYPFSP-LTHYGGDLARSLFMFWYSEPLGPNGFYWIKYQLASLFG- 2133
            D  Y+ ++LDFRGR YP  P L+H G DL R +  +    PLG +G  W+K  LA+ +G 
Sbjct: 522  DGFYYPHNLDFRGRAYPMHPHLSHLGSDLCRGVLEYAEGRPLGKSGLCWLKIHLANKYGG 581

Query: 2134 ------QKNCLEFYEENYDNIIDSARNPMTGKKWWMKADKPFSALAVCFEIKKILDYRMS 2295
                   +  L F E    +I DSA NP+ G  WW  A+ PF  LA C ++   L     
Sbjct: 582  GIEKLSHEGKLAFVENQLFDIFDSAANPVDGNCWWTNAEDPFQCLAACMDLSDALRSPSP 641

Query: 2296 GGKIEDYKCRLPIHQDGSCNGLQHYAGLAADETGGAAVNLIRLETKQDVYTKVLEIVKKK 2475
               +      LPIHQDGSCNGLQHYA L  D  G  AVNL+  E   D+Y+++   V   
Sbjct: 642  YHAVS----HLPIHQDGSCNGLQHYAALGRDYMGAVAVNLVPGEKPADIYSEIASRVLNV 697

Query: 2476 IEQDILEQNLGTVNLETAKFFLPILNRKLVKRPVMTTVYGVTLAGASSQIMQTIKEIVED 2655
            + +D ++          A+  +  ++RKLVK+ VMT+VYGVT  GA  QI + ++E    
Sbjct: 698  VCEDSMKDPATNPTASLARALVDQVDRKLVKQTVMTSVYGVTYIGARQQITKRLQE---- 753

Query: 2656 HRTNPSKTTFSNETLHKLKSVQLTQTSYLAKKILDSIDELFVHAKQIEKWLLQNTKRILT 2835
                  K   +++ L  L  V    + Y  +  LD++ ++F  A+ I  WL    K I +
Sbjct: 754  ------KGLITDDKL--LYDV----SCYATRVTLDALGQMFQSARGIMAWLGDCAKMIAS 801

Query: 2836 SYNIKTIDHLLNNNPSSFETIFTTPMSFFPMSWISPCGLPVIQAYRKIPTSRFNGAIGKT 3015
                                         P+ W SP GLPV+Q Y+K        ++   
Sbjct: 802  KNQ--------------------------PVKWTSPVGLPVVQPYKKYKNYMIRTSLQCL 835

Query: 3016 TWNNSNKLSPMDRRKHELGIAPNFIHSLDAAHLFMTCDSANKAGLTFSAIHDSYWTHPNN 3195
                      + R+K      PNF+HSLD++H+ MT  +  ++GL F+ +HDS+W H  +
Sbjct: 836  ALRREGDAIAIQRQK--AAFPPNFVHSLDSSHMMMTAIACKESGLHFAGVHDSFWVHACD 893

Query: 3196 VEKLSKILREQFVELYSMDYLKYVRQDF 3279
            V+++++ILR+QFVELYSM  L+ + ++F
Sbjct: 894  VDQMNQILRQQFVELYSMPILENLLEEF 921


  Database: sptrembl
    Posted date:  Oct 14, 2003  6:47 PM
  Number of letters in database: 339,323,595
  Number of sequences in database:  1,070,300
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,111,863,921
Number of Sequences: 1070300
Number of extensions: 24972856
Number of successful extensions: 77613
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 69383
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77065
length of database: 339,323,595
effective HSP length: 133
effective length of database: 196,973,695
effective search space used: 213519485380
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)