BLASTX 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Candida_albicans_chr7-r1-35384-34632-3
         (750 letters)

Database: sptrembl 
           1,070,300 sequences; 339,323,595 total letters

Searching.................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q9P4V6||Q9P4V6 (TrEMBL: Candida boidinii (Yeast)) RNA-binding pr...   137   1e-31
Q7ZXB8||Q7ZXB8 (TrEMBL: Xenopus laevis (African clawed frog)) Si...   136   3e-31
Q9DDY9|PABPII|Q9DDY9 (TrEMBL: Xenopus laevis (African clawed fro...   135   4e-31
O14327|SPBC16E9.12C|O14327 (TrEMBL: Schizosaccharomyces pombe (F...   135   6e-31
Q86U42||Q86U42 (TrEMBL: Homo sapiens (Human)) Human full-length ...   133   2e-30
Q28165|PABII|Q28165 (TrEMBL: Bos taurus (Bovine)) PolyA binding ...   133   2e-30
O43484|PABP2|O43484 (TrEMBL: Homo sapiens (Human)) Poly(A) bindi...   133   2e-30
O35935|PABPN1|O35935 (TrEMBL: Mus musculus (Mouse)) Poly(A) bind...   133   2e-30
Q8CCS6||Q8CCS6 (TrEMBL: Mus musculus (Mouse)) Poly.                   133   2e-30
Q9FJN9|MQN23.20|Q9FJN9 (TrEMBL: Arabidopsis thaliana (Mouse-ear ...   127   2e-28
Q9LU62||Q9LU62 (TrEMBL: Arabidopsis thaliana (Mouse-ear cress)) ...   127   2e-28
Q8LG48||Q8LG48 (TrEMBL: Arabidopsis thaliana (Mouse-ear cress)) ...   127   2e-28
Q93VI4|MWD22.6/AT5G51120|Q93VI4 (TrEMBL: Arabidopsis thaliana (M...   127   2e-28
Q804A5||Q804A5 (TrEMBL: Xenopus laevis (African clawed frog)) Pu...   126   3e-28
Q9V308|PABP2|Q9V308 (TrEMBL: Drosophila melanogaster (Fruit fly)...   124   8e-28
Q9LX90|F12B17_300|Q9LX90 (TrEMBL: Arabidopsis thaliana (Mouse-ea...   124   1e-27
Q27926|PABP2|Q27926 (TrEMBL: Drosophila melanogaster (Fruit fly)...   124   1e-27
Q93233|C17E4.5|Q93233 (TrEMBL: Caenorhabditis elegans) C17E4.5 p...   119   3e-26
Q8SSX6||Q8SSX6 (TrEMBL: Dictyostelium discoideum (Slime mold)) R...   111   1e-23
Q09301|EEED8.12|YQOC_CAEEL (SP: Caenorhabditis elegans) Hypothet...   105   5e-22
Q8I2R8|PFI1175C|Q8I2R8 (TrEMBL: Plasmodium falciparum (isolate 3...   103   2e-21
Q09295|EEED8.4|YQO4_CAEEL (SP: Caenorhabditis elegans) Hypotheti...   102   4e-21
O44530|T08B6.5|O44530 (TrEMBL: Caenorhabditis elegans) Hypotheti...    98   1e-19
Q8J1F4|YIB1|Q8J1F4 (TrEMBL: Ashbya gossypii (Yeast) (Eremotheciu...    93   4e-18
P40561|YIR001C|YIS1_YEAST (SP: Saccharomyces cerevisiae (Baker's...    87   3e-16
Q9LTX1||Q9LTX1 (TrEMBL: Arabidopsis thaliana (Mouse-ear cress)) ...    68   1e-10
Q8LBD4||Q8LBD4 (TrEMBL: Arabidopsis thaliana (Mouse-ear cress)) ...    68   1e-10
Q9C7B4|T2E22.5|Q9C7B4 (TrEMBL: Arabidopsis thaliana (Mouse-ear c...    68   1e-10
O45712|R09B3.2|O45712 (TrEMBL: Caenorhabditis elegans) R09B3.2 p...    67   2e-10
O62337|R06C1.4|O62337 (TrEMBL: Caenorhabditis elegans) R06C1.4 p...    66   4e-10

>Q9P4V6||Q9P4V6 (TrEMBL: Candida boidinii (Yeast)) RNA-binding
           protein.
          Length = 255

 Score =  137 bits (345), Expect = 1e-31
 Identities = 75/149 (50%), Positives = 102/149 (68%), Gaps = 5/149 (3%)
 Frame = +1

Query: 199 QIPVENQQVP--SENSEEV---KNKLEEMEQETAKLRELHSQLSSESTNGVTHPTDEEKR 363
           QI +E QQ    SE+ +E+   K K+EEM+QE   LRE+  Q+ +  T+   H     ++
Sbjct: 62  QIQLEQQQQAGISEDDQELAILKAKMEEMKQEANALREMQEQMGNNGTH--PHLDLAARQ 119

Query: 364 DTDARSIYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVN 543
           D D RS+YIGN+DY +TP ELQ+HF S G +NR+TI TNKFTG PKGFAY+EF+D   V 
Sbjct: 120 DIDNRSVYIGNLDYAATPDELQKHFESCGSINRITIPTNKFTGNPKGFAYIEFSDASYVP 179

Query: 544 KAVATLDGSTFRERQLKVLAKRTNIPGIS 630
           +A+ +L+ S F+ R LK+ AKRTN+PG S
Sbjct: 180 QAL-SLNDSLFKGRNLKISAKRTNVPGFS 207


>Q7ZXB8||Q7ZXB8 (TrEMBL: Xenopus laevis (African clawed frog))
           Similar to poly(A) binding protein, nuclear 1.
          Length = 295

 Score =  136 bits (342), Expect = 3e-31
 Identities = 72/146 (49%), Positives = 97/146 (66%), Gaps = 7/146 (4%)
 Frame = +1

Query: 214 NQQVPSENSEEVKNKLEEMEQETAKLRELHSQLSSE-------STNGVTHPTDEEKRDTD 372
           +Q +     E +K ++ EME+E  KL+EL +++  +          G    + EEK + D
Sbjct: 101 DQTIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEAD 160

Query: 373 ARSIYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAV 552
           ARSIY+GNVDYG+T  EL+ HF   G VNRVTIL +KFTG PKGFAY+EF+D ++V  ++
Sbjct: 161 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFSDKESVRTSL 220

Query: 553 ATLDGSTFRERQLKVLAKRTNIPGIS 630
           A LD S FR RQ+KV+ KRTN PGIS
Sbjct: 221 A-LDESLFRGRQIKVVPKRTNRPGIS 245


>Q9DDY9|PABPII|Q9DDY9 (TrEMBL: Xenopus laevis (African clawed frog))
           Poly(A) binding protein II.
          Length = 296

 Score =  135 bits (341), Expect = 4e-31
 Identities = 72/146 (49%), Positives = 96/146 (65%), Gaps = 7/146 (4%)
 Frame = +1

Query: 214 NQQVPSENSEEVKNKLEEMEQETAKLRELHSQLSSE-------STNGVTHPTDEEKRDTD 372
           +Q +     E +K ++ EME+E  KL+EL +++  +          G    + EEK + D
Sbjct: 102 DQTIEDPELEAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSVEEKMEAD 161

Query: 373 ARSIYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAV 552
           ARSIY+GNVDYG+T  EL+ HF   G VNRVTIL +KFTG PKGFAY+EF D ++V  ++
Sbjct: 162 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFTGHPKGFAYIEFCDKESVRTSL 221

Query: 553 ATLDGSTFRERQLKVLAKRTNIPGIS 630
           A LD S FR RQ+KV+ KRTN PGIS
Sbjct: 222 A-LDESLFRGRQIKVVPKRTNRPGIS 246


>O14327|SPBC16E9.12C|O14327 (TrEMBL: Schizosaccharomyces pombe
           (Fission yeast)) Putative poly(a) binding protein.
          Length = 166

 Score =  135 bits (339), Expect = 6e-31
 Identities = 74/147 (50%), Positives = 96/147 (65%)
 Frame = +1

Query: 190 MSDQIPVENQQVPSENSEEVKNKLEEMEQETAKLRELHSQLSSESTNGVTHPTDEEKRDT 369
           MSDQ  ++ Q+   +   E+K ++ EME E AKLR +  QL +E     T     +K   
Sbjct: 1   MSDQDALDTQE---KELLEMKERVAEMEAEAAKLRAMQEQLDNE-----TEALRNDKESI 52

Query: 370 DARSIYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKA 549
           DA+S+Y+GNVDY  TP ELQ HF+S G VNRVTIL +KFTG PKGFAY+EF++   V  A
Sbjct: 53  DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112

Query: 550 VATLDGSTFRERQLKVLAKRTNIPGIS 630
           +  L+GS   ER LKV  KRTN+PG+S
Sbjct: 113 L-LLNGSMLHERPLKVTPKRTNVPGMS 138


>Q86U42||Q86U42 (TrEMBL: Homo sapiens (Human)) Human full-length
           cDNA clone CS0DF018YN09 of fetal brain of Homo sapiens
           (Human) (Fragment).
          Length = 298

 Score =  133 bits (335), Expect = 2e-30
 Identities = 70/137 (51%), Positives = 94/137 (68%), Gaps = 7/137 (5%)
 Frame = +1

Query: 241 EEVKNKLEEMEQETAKLRELHSQLSSE-------STNGVTHPTDEEKRDTDARSIYIGNV 399
           E +K ++ EME+E  KL+EL +++  +          G    + EEK + DARSIY+GNV
Sbjct: 122 EAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNV 181

Query: 400 DYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTFR 579
           DYG+T  EL+ HF   G VNRVTIL +KF+G PKGFAY+EF+D ++V  ++A LD S FR
Sbjct: 182 DYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA-LDESLFR 240

Query: 580 ERQLKVLAKRTNIPGIS 630
            RQ+KV+ KRTN PGIS
Sbjct: 241 GRQIKVIPKRTNRPGIS 257


>Q28165|PABII|Q28165 (TrEMBL: Bos taurus (Bovine)) PolyA binding
           protein II.
          Length = 306

 Score =  133 bits (335), Expect = 2e-30
 Identities = 70/137 (51%), Positives = 94/137 (68%), Gaps = 7/137 (5%)
 Frame = +1

Query: 241 EEVKNKLEEMEQETAKLRELHSQLSSE-------STNGVTHPTDEEKRDTDARSIYIGNV 399
           E +K ++ EME+E  KL+EL +++  +          G    + EEK + DARSIY+GNV
Sbjct: 120 EAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNV 179

Query: 400 DYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTFR 579
           DYG+T  EL+ HF   G VNRVTIL +KF+G PKGFAY+EF+D ++V  ++A LD S FR
Sbjct: 180 DYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA-LDESLFR 238

Query: 580 ERQLKVLAKRTNIPGIS 630
            RQ+KV+ KRTN PGIS
Sbjct: 239 GRQIKVIPKRTNRPGIS 255


>O43484|PABP2|O43484 (TrEMBL: Homo sapiens (Human)) Poly(A) binding
           protein II (Similar to poly(A)-binding protein, nuclear
           1).
          Length = 306

 Score =  133 bits (335), Expect = 2e-30
 Identities = 70/137 (51%), Positives = 94/137 (68%), Gaps = 7/137 (5%)
 Frame = +1

Query: 241 EEVKNKLEEMEQETAKLRELHSQLSSE-------STNGVTHPTDEEKRDTDARSIYIGNV 399
           E +K ++ EME+E  KL+EL +++  +          G    + EEK + DARSIY+GNV
Sbjct: 120 EAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSIEEKMEADARSIYVGNV 179

Query: 400 DYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTFR 579
           DYG+T  EL+ HF   G VNRVTIL +KF+G PKGFAY+EF+D ++V  ++A LD S FR
Sbjct: 180 DYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA-LDESLFR 238

Query: 580 ERQLKVLAKRTNIPGIS 630
            RQ+KV+ KRTN PGIS
Sbjct: 239 GRQIKVIPKRTNRPGIS 255


>O35935|PABPN1|O35935 (TrEMBL: Mus musculus (Mouse)) Poly(A) binding
           protein II.
          Length = 302

 Score =  133 bits (334), Expect = 2e-30
 Identities = 70/137 (51%), Positives = 94/137 (68%), Gaps = 7/137 (5%)
 Frame = +1

Query: 241 EEVKNKLEEMEQETAKLRELHSQLSSE-------STNGVTHPTDEEKRDTDARSIYIGNV 399
           E +K ++ EME+E  KL+EL +++  +          G    + EEK + DARSIY+GNV
Sbjct: 116 EAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNV 175

Query: 400 DYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTFR 579
           DYG+T  EL+ HF   G VNRVTIL +KF+G PKGFAY+EF+D ++V  ++A LD S FR
Sbjct: 176 DYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA-LDESLFR 234

Query: 580 ERQLKVLAKRTNIPGIS 630
            RQ+KV+ KRTN PGIS
Sbjct: 235 GRQIKVIPKRTNRPGIS 251


>Q8CCS6||Q8CCS6 (TrEMBL: Mus musculus (Mouse)) Poly.
          Length = 292

 Score =  133 bits (334), Expect = 2e-30
 Identities = 70/137 (51%), Positives = 94/137 (68%), Gaps = 7/137 (5%)
 Frame = +1

Query: 241 EEVKNKLEEMEQETAKLRELHSQLSSE-------STNGVTHPTDEEKRDTDARSIYIGNV 399
           E +K ++ EME+E  KL+EL +++  +          G    + EEK + DARSIY+GNV
Sbjct: 116 EAIKARVREMEEEAEKLKELQNEVEKQMNMSPPPGNAGPVIMSLEEKMEADARSIYVGNV 175

Query: 400 DYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTFR 579
           DYG+T  EL+ HF   G VNRVTIL +KF+G PKGFAY+EF+D ++V  ++A LD S FR
Sbjct: 176 DYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSLA-LDESLFR 234

Query: 580 ERQLKVLAKRTNIPGIS 630
            RQ+KV+ KRTN PGIS
Sbjct: 235 GRQIKVIPKRTNRPGIS 251


>Q9FJN9|MQN23.20|Q9FJN9 (TrEMBL: Arabidopsis thaliana (Mouse-ear
           cress)) Poly(A)-binding protein II-like.
          Length = 220

 Score =  127 bits (318), Expect = 2e-28
 Identities = 68/134 (50%), Positives = 92/134 (68%), Gaps = 5/134 (3%)
 Frame = +1

Query: 241 EEVKNKLEEMEQETAKLRELHSQLSSESTNGVTHPTD-----EEKRDTDARSIYIGNVDY 405
           +E+K +L+EME E A LRE+ +++  E   G   P         K + DARS+++GNVDY
Sbjct: 44  DEMKKRLKEMEDEAAALREMQAKVEKEM--GAQDPASIAANQAGKEEVDARSVFVGNVDY 101

Query: 406 GSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTFRER 585
             TP E+QQHF + G V+RVTILT+KF GQPKGFAY+EF + +AV +A+  L+ S    R
Sbjct: 102 ACTPEEVQQHFQTCGTVHRVTILTDKF-GQPKGFAYVEFVEVEAVQEAL-QLNESELHGR 159

Query: 586 QLKVLAKRTNIPGI 627
           QLKVL KRTN+PG+
Sbjct: 160 QLKVLQKRTNVPGL 173


>Q9LU62||Q9LU62 (TrEMBL: Arabidopsis thaliana (Mouse-ear cress))
           Similarity to poly(A)-binding protein II.
          Length = 267

 Score =  127 bits (318), Expect = 2e-28
 Identities = 68/139 (48%), Positives = 96/139 (69%), Gaps = 6/139 (4%)
 Frame = +1

Query: 229 SENSEEVKNKLEEMEQETAKLRELHSQL------SSESTNGVTHPTDEEKRDTDARSIYI 390
           S + E++K +++E+E+E   LRE+ ++       S + + GV+     EK + D+RSIY+
Sbjct: 51  SRDLEDMKKRIKEIEEEAGALREMQAKAEKDMGASQDPSGGVSAA---EKEEVDSRSIYV 107

Query: 391 GNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLDGS 570
           GNVDY  TP E+QQHF S G VNRVTILT+KF GQPKGFAY+EF + +AV  ++  L+ S
Sbjct: 108 GNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEVEAVQNSL-ILNES 165

Query: 571 TFRERQLKVLAKRTNIPGI 627
               RQ+KV AKRTN+PG+
Sbjct: 166 ELHGRQIKVSAKRTNVPGM 184


>Q8LG48||Q8LG48 (TrEMBL: Arabidopsis thaliana (Mouse-ear cress))
           Contains similarity to poly(A)-binding protein II.
          Length = 227

 Score =  127 bits (318), Expect = 2e-28
 Identities = 68/139 (48%), Positives = 96/139 (69%), Gaps = 6/139 (4%)
 Frame = +1

Query: 229 SENSEEVKNKLEEMEQETAKLRELHSQL------SSESTNGVTHPTDEEKRDTDARSIYI 390
           S + E++K +++E+E+E   LRE+ ++       S + + GV+     EK + D+RSIY+
Sbjct: 51  SRDLEDMKKRIKEIEEEAGALREMQAKAEKDMGASQDPSGGVSAA---EKEEVDSRSIYV 107

Query: 391 GNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLDGS 570
           GNVDY  TP E+QQHF S G VNRVTILT+KF GQPKGFAY+EF + +AV  ++  L+ S
Sbjct: 108 GNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEVEAVQNSL-ILNES 165

Query: 571 TFRERQLKVLAKRTNIPGI 627
               RQ+KV AKRTN+PG+
Sbjct: 166 ELHGRQIKVSAKRTNVPGM 184


>Q93VI4|MWD22.6/AT5G51120|Q93VI4 (TrEMBL: Arabidopsis thaliana
           (Mouse-ear cress)) Putative polyA-binding protein II
           (AT5g51120/MWD22_6) (Hypothetical protein).
          Length = 227

 Score =  127 bits (318), Expect = 2e-28
 Identities = 68/139 (48%), Positives = 96/139 (69%), Gaps = 6/139 (4%)
 Frame = +1

Query: 229 SENSEEVKNKLEEMEQETAKLRELHSQL------SSESTNGVTHPTDEEKRDTDARSIYI 390
           S + E++K +++E+E+E   LRE+ ++       S + + GV+     EK + D+RSIY+
Sbjct: 51  SRDLEDMKKRIKEIEEEAGALREMQAKAEKDMGASQDPSGGVSAA---EKEEVDSRSIYV 107

Query: 391 GNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLDGS 570
           GNVDY  TP E+QQHF S G VNRVTILT+KF GQPKGFAY+EF + +AV  ++  L+ S
Sbjct: 108 GNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFVEVEAVQNSL-ILNES 165

Query: 571 TFRERQLKVLAKRTNIPGI 627
               RQ+KV AKRTN+PG+
Sbjct: 166 ELHGRQIKVSAKRTNVPGM 184


>Q804A5||Q804A5 (TrEMBL: Xenopus laevis (African clawed frog))
           Putative polyA-binding protein PABPN2/ePABP2.
          Length = 218

 Score =  126 bits (316), Expect = 3e-28
 Identities = 68/160 (42%), Positives = 102/160 (63%), Gaps = 20/160 (12%)
 Frame = +1

Query: 211 ENQQVPSENSEEVKNKLEEMEQETAKLREL------------------HSQLSS-ESTNG 333
           E  ++     + ++ ++ EME+E  +L+ L                  HS++++ E T G
Sbjct: 18  EECELDDPELKAIRMRVREMEEEAERLKGLSGQDKSIGVSPRPCMKLIHSKMTAGEYTEG 77

Query: 334 VTHPTD-EEKRDTDARSIYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFA 510
              P   EEK++ D RS+Y+GNVDYG T  +L+ HFSS G +NR+TIL +KF+G PKG+A
Sbjct: 78  PPRPLSAEEKKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYA 137

Query: 511 YLEFADTDAVNKAVATLDGSTFRERQLKVLAKRTNIPGIS 630
           Y+EFA+ ++V+ AV T+D + FR R +KVL KRTN+PGIS
Sbjct: 138 YIEFAERNSVDAAV-TMDETVFRGRTIKVLPKRTNMPGIS 176


>Q9V308|PABP2|Q9V308 (TrEMBL: Drosophila melanogaster (Fruit fly))
           PABP2 protein (RE69521p) (RE74211p).
          Length = 224

 Score =  124 bits (312), Expect = 8e-28
 Identities = 65/136 (47%), Positives = 95/136 (69%), Gaps = 6/136 (4%)
 Frame = +1

Query: 241 EEVKNKLEEMEQETAKLRELHS----QLSSESTNGV-THPTD-EEKRDTDARSIYIGNVD 402
           E +K +++EME+E  K++++ S    Q++  ST G+ T P   EEK++ D RS+Y+GNVD
Sbjct: 45  EAIKARVKEMEEEAEKIKQMQSEVDKQMAGGSTTGLATVPLSLEEKQEIDTRSVYVGNVD 104

Query: 403 YGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTFRE 582
           YG++  EL+ HF   G +NRVTIL NK  G PKGFAY+EF   + V  A+A ++ + FR 
Sbjct: 105 YGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALA-MNETLFRG 163

Query: 583 RQLKVLAKRTNIPGIS 630
           RQ+KV++KRTN PG+S
Sbjct: 164 RQIKVMSKRTNRPGLS 179


>Q9LX90|F12B17_300|Q9LX90 (TrEMBL: Arabidopsis thaliana (Mouse-ear
           cress)) RNA binding protein-like (Putative
           polyadenylate-binding protein II) (PAB2).
          Length = 217

 Score =  124 bits (311), Expect = 1e-27
 Identities = 68/134 (50%), Positives = 90/134 (67%), Gaps = 6/134 (4%)
 Frame = +1

Query: 244 EVKNKLEEMEQETAKLRELHSQLSSESTNGVTHP------TDEEKRDTDARSIYIGNVDY 405
           E+K +L+EME+E A LRE+ +++  E   G T          E K + DARS+Y+GNVDY
Sbjct: 41  EMKRRLKEMEEEAAALREMQAKVEKEM--GATQDPASMAANQEGKEEVDARSVYVGNVDY 98

Query: 406 GSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTFRER 585
             TP E+Q HF + G VNRVTIL +KF GQPKGFAY+EF + +AV +A+  L+ S    R
Sbjct: 99  ACTPEEVQLHFQTCGTVNRVTILMDKF-GQPKGFAYVEFVEVEAVQEAL-QLNESELHGR 156

Query: 586 QLKVLAKRTNIPGI 627
           QLKV  KRTN+PG+
Sbjct: 157 QLKVSPKRTNVPGM 170


>Q27926|PABP2|Q27926 (TrEMBL: Drosophila melanogaster (Fruit fly))
           RNA binding protein.
          Length = 224

 Score =  124 bits (311), Expect = 1e-27
 Identities = 64/136 (47%), Positives = 95/136 (69%), Gaps = 6/136 (4%)
 Frame = +1

Query: 241 EEVKNKLEEMEQETAKLRELHSQLSSE----STNGV-THPTD-EEKRDTDARSIYIGNVD 402
           E +K +++EME+E  K++++ S++  +    ST G+ T P   EEK++ D RS+Y+GNVD
Sbjct: 45  EAIKARVKEMEEEAEKIKQMQSEVDKQMRGGSTTGLATVPLSLEEKQEIDTRSVYVGNVD 104

Query: 403 YGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTFRE 582
           YG++  EL+ HF   G +NRVTIL NK  G PKGFAY+EF   + V  A+A ++ + FR 
Sbjct: 105 YGASAEELEAHFHGCGTINRVTILCNKADGHPKGFAYIEFGSKEFVETALA-MNETLFRG 163

Query: 583 RQLKVLAKRTNIPGIS 630
           RQ+KV++KRTN PG+S
Sbjct: 164 RQIKVMSKRTNRPGLS 179


>Q93233|C17E4.5|Q93233 (TrEMBL: Caenorhabditis elegans) C17E4.5
           protein.
          Length = 205

 Score =  119 bits (299), Expect = 3e-26
 Identities = 64/160 (40%), Positives = 99/160 (61%), Gaps = 8/160 (5%)
 Frame = +1

Query: 175 NNLSIMSDQIPVENQQVPSENSEEVKNKLEEMEQETAKLRELHSQL--------SSESTN 330
           +N  I  D + +E+      +   ++  L E+E+E  KL+ + +++        SS+S +
Sbjct: 3   DNDIIDDDVLNIEDMTGDDADLSAIEGDLNEIEEEQKKLKAIQNEMVGHMNLNTSSQSNS 62

Query: 331 GVTHPTDEEKRDTDARSIYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFA 510
             +  T EEK + DA+S+Y+GNVDYG+T  E++QHF   G V+RVTI  ++F+G PKGFA
Sbjct: 63  SQSLLTPEEKAEADAKSVYVGNVDYGATAEEIEQHFHGCGSVSRVTIQCDRFSGHPKGFA 122

Query: 511 YLEFADTDAVNKAVATLDGSTFRERQLKVLAKRTNIPGIS 630
           Y+EF + + +  A+A  D S  R RQ+KV  KRTN PG+S
Sbjct: 123 YVEFTEKEGMQNALAMTD-SLLRGRQIKVDPKRTNKPGMS 161


>Q8SSX6||Q8SSX6 (TrEMBL: Dictyostelium discoideum (Slime mold)) RNA
           binding protein (Hypothetical protein).
          Length = 246

 Score =  111 bits (277), Expect = 1e-23
 Identities = 64/140 (45%), Positives = 88/140 (62%), Gaps = 13/140 (9%)
 Frame = +1

Query: 241 EEVKNKLEEMEQETAKLRELHSQLSSEST--NGV-----------THPTDEEKRDTDARS 381
           EE+K +  EME+E  KL EL + L S  T  NGV              TD+E  + D+RS
Sbjct: 69  EEMKKRFREMEEEAKKLTELQNNLESNITGNNGVGIGGNIGGGGGLMNTDQE--EIDSRS 126

Query: 382 IYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATL 561
           +Y+GNVDY ST  ++  +F S G VNR+TIL++K TG PKG  Y+EF + +++  A+A L
Sbjct: 127 VYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMA-L 185

Query: 562 DGSTFRERQLKVLAKRTNIP 621
           + S F ERQLK+  KRTN+P
Sbjct: 186 NDSFFNERQLKITPKRTNLP 205


>Q09301|EEED8.12|YQOC_CAEEL (SP: Caenorhabditis elegans)
           Hypothetical RNA-binding protein EEED8.12 in chromosome
           II.
          Length = 197

 Score =  105 bits (262), Expect = 5e-22
 Identities = 55/132 (41%), Positives = 87/132 (65%), Gaps = 2/132 (1%)
 Frame = +1

Query: 238 SEEVKNKLE-EMEQETAKLRELHSQLSSESTNGV-THPTDEEKRDTDARSIYIGNVDYGS 411
           +EE  N  E E+E E+A L ++ ++++    +     PT+EE++  DA+S++IGNVD+ S
Sbjct: 13  NEESSNSFEMEIEAESAILEQIQNKMAKNLESAAYVPPTEEEQKAIDAKSVFIGNVDFNS 72

Query: 412 TPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTFRERQL 591
           T  E+++HF   G + R TI  +KFT + K FAY+EF D+ ++  A+  ++GS FR R +
Sbjct: 73  TIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENAL-VMNGSLFRSRPI 131

Query: 592 KVLAKRTNIPGI 627
            V AKRTNIPG+
Sbjct: 132 VVTAKRTNIPGM 143


>Q8I2R8|PFI1175C|Q8I2R8 (TrEMBL: Plasmodium falciparum (isolate
           3D7)) RNA-binding protein, putative.
          Length = 202

 Score =  103 bits (258), Expect = 2e-21
 Identities = 57/149 (38%), Positives = 89/149 (59%), Gaps = 4/149 (2%)
 Frame = +1

Query: 196 DQIPVENQQVPSENSEEVKNKLEEMEQETAKLRELHSQLSSE----STNGVTHPTDEEKR 363
           DQ+  E  +    N +   + +  +++E + L++L           +  G     ++E+ 
Sbjct: 7   DQMNAEKAKGDGANFKVQVDDINNIDKEFSDLQKLKMMNEGAEIQMNQGGNVDSHEQEQE 66

Query: 364 DTDARSIYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVN 543
           + + RSI++GNVDY + P ELQ  FS  G++NRVTIL NK TG  KG+AY+EFAD  +V 
Sbjct: 67  EINNRSIFVGNVDYSTQPEELQSLFSECGLINRVTILVNKNTGHSKGYAYIEFADASSVR 126

Query: 544 KAVATLDGSTFRERQLKVLAKRTNIPGIS 630
            A+ +L  S F++RQ+KV +KR NIPG +
Sbjct: 127 TAL-SLSESFFKKRQIKVCSKRRNIPGFN 154


>Q09295|EEED8.4|YQO4_CAEEL (SP: Caenorhabditis elegans) Hypothetical
           RNA-binding protein EEED8.4 in chromosome II.
          Length = 237

 Score =  102 bits (254), Expect = 4e-21
 Identities = 50/122 (40%), Positives = 83/122 (68%), Gaps = 1/122 (0%)
 Frame = +1

Query: 265 EMEQETAKLRELHSQLSSESTNGV-THPTDEEKRDTDARSIYIGNVDYGSTPLELQQHFS 441
           E+E E+A L+++ ++++    +     PT+EE++  DA+S++IGNVD+ ST  E+++HF 
Sbjct: 63  EIEAESAILQQIQNKMAKHLESAAYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFK 122

Query: 442 SAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTFRERQLKVLAKRTNIP 621
             G + + TI  +KFT + K FAY+EF D+ ++  A+  ++GS FR R + V AKRTNIP
Sbjct: 123 GCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENAL-VMNGSLFRSRPIVVTAKRTNIP 181

Query: 622 GI 627
           G+
Sbjct: 182 GM 183


>O44530|T08B6.5|O44530 (TrEMBL: Caenorhabditis elegans) Hypothetical
           protein T08B6.5.
          Length = 177

 Score = 97.8 bits (242), Expect = 1e-19
 Identities = 55/116 (47%), Positives = 75/116 (64%)
 Frame = +1

Query: 280 TAKLRELHSQLSSESTNGVTHPTDEEKRDTDARSIYIGNVDYGSTPLELQQHFSSAGVVN 459
           TA+  EL  Q  S S   +  PT EE+  TDARS+Y+GNVD+ ST  E+++HF+  G V 
Sbjct: 15  TAEEMELLKQALSASKKYMA-PTAEEQEKTDARSVYVGNVDWKSTVSEIEEHFAVCGKVA 73

Query: 460 RVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTFRERQLKVLAKRTNIPGI 627
           RVTI  +KFTG  K FA++EF   ++V  A+  L G+ FR R++ V  KRTN PG+
Sbjct: 74  RVTIPKDKFTGYQKNFAFVEFQKLESVQLAL-VLSGTMFRNRKIMVTLKRTNKPGM 128


>Q8J1F4|YIB1|Q8J1F4 (TrEMBL: Ashbya gossypii (Yeast) (Eremothecium
           gossypii)) Yib1.
          Length = 324

 Score = 92.8 bits (229), Expect = 4e-18
 Identities = 54/161 (33%), Positives = 92/161 (57%), Gaps = 7/161 (4%)
 Frame = +1

Query: 169 VPNNLSIMSDQIPVENQQVPSENSEEVKNKLEEMEQETAK--LRELHSQLSSESTNGVTH 342
           VP N    S  IP+E+ +   + ++   +  E+     +K    E  S  S +ST  V+ 
Sbjct: 11  VPGN----SAAIPIESPRSDEQLADTEDSSWEQDMSSDSKGDQDEQSSYNSLDSTTPVSQ 66

Query: 343 PTDEEKR-----DTDARSIYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGF 507
           P  ++++     + D+RS+++ ++   +T   L++HF   GV++R+TIL NK TG+PKG+
Sbjct: 67  PLSKDRKHAKQVELDSRSVFVSSITPEATAEMLEEHFKDVGVISRITILYNKKTGEPKGY 126

Query: 508 AYLEFADTDAVNKAVATLDGSTFRERQLKVLAKRTNIPGIS 630
           AY++F    +V KA+  LDGS+F    + V  KRTN+PG +
Sbjct: 127 AYIQFESISSVEKAL-QLDGSSFNGNTISVAKKRTNLPGFN 166


>P40561|YIR001C|YIS1_YEAST (SP: Saccharomyces cerevisiae (Baker's
           yeast)) Hypothetical 29.0 kDa protein in BET1-PAN1
           intergenic region.
          Length = 250

 Score = 86.7 bits (213), Expect = 3e-16
 Identities = 48/139 (34%), Positives = 80/139 (57%), Gaps = 5/139 (3%)
 Frame = +1

Query: 229 SENSEEVKNKLEEMEQETAKLRELHSQLSSESTNGVTHPTDEEKR-----DTDARSIYIG 393
           +E S   KN  +E+E     L EL  +LS E T  V+    +E++     + D+RSI++G
Sbjct: 15  TEISNNKKNDKQELE-----LDELVGKLSIEGTPQVSQKLSKEEKHAHQLEADSRSIFVG 69

Query: 394 NVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVATLDGST 573
           N+    TP +++ HF   G + R+T+L ++ TG PKG+ Y+EF ++ A  +    L+G  
Sbjct: 70  NITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEF-ESPAYREKALQLNGGE 128

Query: 574 FRERQLKVLAKRTNIPGIS 630
            + +++ V  KRTNIPG +
Sbjct: 129 LKGKKIAVSRKRTNIPGFN 147


>Q9LTX1||Q9LTX1 (TrEMBL: Arabidopsis thaliana (Mouse-ear cress))
           Similarity to poly(A)-binding protein.
          Length = 662

 Score = 67.8 bits (164), Expect = 1e-10
 Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
 Frame = +1

Query: 304 SQLSSESTNGVTHP----TDEEKRDTDARSIYIGNVDYGSTPLELQQHFSSAGVVNRVTI 471
           + +  EST   + P    T     D  +R+I++ NV +G+T   L +HF+  G V +  I
Sbjct: 476 ASVKEESTTNKSVPGTLSTTRPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFI 535

Query: 472 LTNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTFRERQLKVL 600
           +T+  TGQP G AY+EF   +A   A+ +LDG++F  R LK++
Sbjct: 536 VTDPATGQPSGSAYIEFTRKEAAENAL-SLDGTSFMSRILKIV 577


>Q8LBD4||Q8LBD4 (TrEMBL: Arabidopsis thaliana (Mouse-ear cress))
           Hypothetical protein.
          Length = 320

 Score = 67.8 bits (164), Expect = 1e-10
 Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
 Frame = +1

Query: 304 SQLSSESTNGVTHP----TDEEKRDTDARSIYIGNVDYGSTPLELQQHFSSAGVVNRVTI 471
           + +  EST   + P    T     D  +R+I++ NV +G+T   L +HF+  G V +  I
Sbjct: 134 ASVKEESTTNKSVPGTLSTTRPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFI 193

Query: 472 LTNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTFRERQLKVL 600
           +T+  TGQP G AY+EF   +A   A+ +LDG++F  R LK++
Sbjct: 194 VTDPATGQPSGSAYIEFTRKEAAENAL-SLDGTSFMSRILKIV 235


>Q9C7B4|T2E22.5|Q9C7B4 (TrEMBL: Arabidopsis thaliana (Mouse-ear
           cress)) Hypothetical protein.
          Length = 674

 Score = 67.8 bits (164), Expect = 1e-10
 Identities = 37/103 (35%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
 Frame = +1

Query: 304 SQLSSESTNGVTHP----TDEEKRDTDARSIYIGNVDYGSTPLELQQHFSSAGVVNRVTI 471
           + +  EST   + P    T     D  +R+I++ NV +G+T   L +HF+  G V +  I
Sbjct: 488 ASVKEESTTNKSVPGTLSTTRPLEDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFI 547

Query: 472 LTNKFTGQPKGFAYLEFADTDAVNKAVATLDGSTFRERQLKVL 600
           +T+  TGQP G AY+EF   +A   A+ +LDG++F  R LK++
Sbjct: 548 VTDPATGQPSGSAYIEFTRKEAAENAL-SLDGTSFMSRILKIV 589


>O45712|R09B3.2|O45712 (TrEMBL: Caenorhabditis elegans) R09B3.2
           protein.
          Length = 83

 Score = 67.4 bits (163), Expect = 2e-10
 Identities = 30/73 (41%), Positives = 49/73 (67%)
 Frame = +1

Query: 379 SIYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVAT 558
           S+Y+GN  + +T  EL   FSS G +N V I+ ++ TG+P+GFA++EFA+  +  +AV  
Sbjct: 6   SVYVGNAPFQTTEEELGNFFSSIGQINNVRIVCDRETGRPRGFAFIEFAEEGSAQRAVEQ 65

Query: 559 LDGSTFRERQLKV 597
           ++G+ F  R L+V
Sbjct: 66  MNGAEFNGRPLRV 78


>O62337|R06C1.4|O62337 (TrEMBL: Caenorhabditis elegans) R06C1.4
           protein.
          Length = 84

 Score = 66.2 bits (160), Expect = 4e-10
 Identities = 30/73 (41%), Positives = 48/73 (65%)
 Frame = +1

Query: 379 SIYIGNVDYGSTPLELQQHFSSAGVVNRVTILTNKFTGQPKGFAYLEFADTDAVNKAVAT 558
           S+Y+GNV Y  T  E+  +F++ G VN V I+ ++ TG+P+GFA++EF++     +AV  
Sbjct: 7   SVYVGNVPYQGTEEEIGNYFAAVGHVNNVRIVYDRETGRPRGFAFVEFSEEAGAQRAVEQ 66

Query: 559 LDGSTFRERQLKV 597
           L+G  F  R L+V
Sbjct: 67  LNGVAFNGRNLRV 79


  Database: sptrembl
    Posted date:  Oct 14, 2003  6:47 PM
  Number of letters in database: 339,323,595
  Number of sequences in database:  1,070,300
  
Lambda     K      H
   0.313    0.131    0.364 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 181,465,505
Number of Sequences: 1070300
Number of extensions: 3419987
Number of successful extensions: 13291
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13053
length of database: 339,323,595
effective HSP length: 118
effective length of database: 213,028,195
effective search space used: 27906693545
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)