BLASTX 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Candida_albicans_chr7-r2-5761-3464-45
         (2295 letters)

Database: sptrembl 
           1,070,300 sequences; 339,323,595 total letters

Searching.................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

P06839|RAD3|RAD3_YEAST (SP: Saccharomyces cerevisiae (Baker's ye...  1228   0.0  
Q9P609|B2O8.040|Q9P609 (TrEMBL: Neurospora crassa) Probable exci...  1135   0.0  
P26659|RAD15|RA15_SCHPO (SP: Schizosaccharomyces pombe (Fission ...  1098   0.0  
Q91941|ERCC2/XPD|Q91941 (TrEMBL: Xiphophorus maculatus (Southern...   847   0.0  
O08811|ERCC2|XPD_MOUSE (SP: Mus musculus (Mouse)) TFIIH basal tr...   827   0.0  
Q8C487|ERCC2|Q8C487 (TrEMBL: Mus musculus (Mouse)) Excision repa...   827   0.0  
Q60452|ERCC2|XPD_CRIGR (SP: Cricetulus griseus (Chinese hamster)...   823   0.0  
P18074|ERCC2|XPD_HUMAN (SP: Homo sapiens (Human)) TFIIH basal tr...   822   0.0  
Q9XYZ2|XPD|Q9XYZ2 (TrEMBL: Drosophila melanogaster (Fruit fly)) ...   820   0.0  
Q8K223||Q8K223 (TrEMBL: Mus musculus (Mouse)) Similar to excisio...   792   0.0  
Q8N721|ERCC2|Q8N721 (TrEMBL: Homo sapiens (Human)) Excision repa...   792   0.0  
O00836|REPD|O00836 (TrEMBL: Dictyostelium discoideum (Slime mold...   763   0.0  
Q9SE44||Q9SE44 (TrEMBL: Arabidopsis thaliana (Mouse-ear cress)) ...   759   0.0  
Q8W4M7|AT1G03190,|Q8W4M7 (TrEMBL: Arabidopsis thaliana (Mouse-ea...   758   0.0  
Q9ZVS1|F15K9.20|Q9ZVS1 (TrEMBL: Arabidopsis thaliana (Mouse-ear ...   737   0.0  
Q7ZWH2||Q7ZWH2 (TrEMBL: Brachydanio rerio (Zebrafish) (Danio rer...   690   0.0  
Q8SRT4|ECU06_0200|Q8SRT4 (TrEMBL: Encephalitozoon cuniculi) DNA ...   683   0.0  
Q9N3L2|Y50D7A.2|Q9N3L2 (TrEMBL: Caenorhabditis elegans) Hypothet...   619   e-176
Q8WSK4|RAD3|Q8WSK4 (TrEMBL: Plasmodium falciparum) RAD3-like DNA...   422   e-117
Q8I2H7|PFI1650W|Q8I2H7 (TrEMBL: Plasmodium falciparum (isolate 3...   421   e-116
Q96HN4||Q96HN4 (TrEMBL: Homo sapiens (Human)) Similar to Xerodem...   377   e-103
Q9W484|CG4078|Q9W484 (TrEMBL: Drosophila melanogaster (Fruit fly...   234   3e-60
Q93575|F25H2.13|Q93575 (TrEMBL: Caenorhabditis elegans) Hypothet...   203   9e-51
Q9CA97|F19K16.9|Q9CA97 (TrEMBL: Arabidopsis thaliana (Mouse-ear ...   194   3e-48
Q8IM12|PF14_0081|Q8IM12 (TrEMBL: Plasmodium falciparum (isolate ...   194   4e-48
Q9NZ71|NHL|NHL_HUMAN (SP: Homo sapiens (Human)) Helicase-like pr...   186   1e-45
Q94JB5|P0710A02.18|Q94JB5 (TrEMBL: Oryza sativa (Rice)) P0710A02...   174   4e-42
Q86VQ4||Q86VQ4 (TrEMBL: Homo sapiens (Human)) DDX11 protein.          171   3e-41
Q92770|CHLR1|Q92770 (TrEMBL: Homo sapiens (Human)) Helicase.          171   3e-41
Q92998|CHLR1|Q92998 (TrEMBL: Homo sapiens (Human)) CHL1 potentia...   171   3e-41

>P06839|RAD3|RAD3_YEAST (SP: Saccharomyces cerevisiae (Baker's yeast))
            DNA repair helicase RAD3 (EC 3.6.1.-).
          Length = 778

 Score = 1228 bits (3178), Expect = 0.0
 Identities = 593/742 (79%), Positives = 676/742 (91%), Gaps = 1/742 (0%)
 Frame = +1

Query: 1    MKFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 180
            MKF+IDDLPVLFPYP+IYPEQY+YMCDIKKTLDVGGN ILEMPSGTGKTVSLLSLT+AYQ
Sbjct: 1    MKFYIDDLPVLFPYPKIYPEQYNYMCDIKKTLDVGGNSILEMPSGTGKTVSLLSLTIAYQ 60

Query: 181  MHYPEHRKIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPTI 360
            MHYPEHRKI+YCSRTMSEIEKAL+EL  LM++R  ELG  EDFRGLGLTSRKNLCLHP +
Sbjct: 61   MHYPEHRKIIYCSRTMSEIEKALVELENLMDYRTKELGYQEDFRGLGLTSRKNLCLHPEV 120

Query: 361  SKERKGVVVDEKCRRITNGQLKEKIEKGVPTEDSLCSFHEKLYDLEPHNLVPPGVYSFDA 540
            SKERKG VVDEKCRR+TNGQ K K+E+       LC +HE LY++E  + +P GV+SF+ 
Sbjct: 121  SKERKGTVVDEKCRRMTNGQAKRKLEEDPEANVELCEYHENLYNIEVEDYLPKGVFSFEK 180

Query: 541  LIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAHNI 720
            L+KYC+E+  CPYF VRRMI  CNIIIYSYHYLLDPKIAERVS E+SKDSIVIFDEAHNI
Sbjct: 181  LLKYCEEKTLCPYFIVRRMISLCNIIIYSYHYLLDPKIAERVSNEVSKDSIVIFDEAHNI 240

Query: 721  DNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAEIAR 900
            DNVCIESLSLDLT + L++A+RGAN L E I +++  DS+KLQ+EYE+LV+GL  A+I  
Sbjct: 241  DNVCIESLSLDLTTDALRRATRGANALDERISEVRKVDSQKLQDEYEKLVQGLHSADILT 300

Query: 901  DQEL-FMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSFL 1077
            DQE  F+  PVLPQDLL EAIPGNIR+ EHF++FLKR IEYLKTRMKVLHVISETP SFL
Sbjct: 301  DQEEPFVETPVLPQDLLTEAIPGNIRRAEHFVSFLKRLIEYLKTRMKVLHVISETPKSFL 360

Query: 1078 QHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLIL 1257
            QHLK+LT+IERKPLRFCSERLSLLVRTLEVTE++DF ALKDIATFATL+STY+ GF LI+
Sbjct: 361  QHLKQLTFIERKPLRFCSERLSLLVRTLEVTEVEDFTALKDIATFATLISTYEEGFLLII 420

Query: 1258 EPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVIQ 1437
            EPYE E + VPNPI+ FTCLDASIAIKPVF+RFSSVIITSGTISPLDMYP+ML F+TV+Q
Sbjct: 421  EPYEIENAAVPNPIMRFTCLDASIAIKPVFERFSSVIITSGTISPLDMYPRMLNFKTVLQ 480

Query: 1438 ESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVF 1617
            +SYAMTLA++SFLPMI+TKGSDQV+ISSRFEIRNDPS+VRNYGS+L+EFAKITPDGMVVF
Sbjct: 481  KSYAMTLAKKSFLPMIITKGSDQVAISSRFEIRNDPSIVRNYGSMLVEFAKITPDGMVVF 540

Query: 1618 FPSYLYMESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAVLLS 1797
            FPSYLYMESI+SMWQ+MG+LDEVWKHKLILVETPDAQETSLALETYRKACSNGRGA+LLS
Sbjct: 541  FPSYLYMESIVSMWQTMGILDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAILLS 600

Query: 1798 VARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQIKENDFLSFDAMR 1977
            VARGKVSEGIDFDH YGRTVLMIGIPFQYTESRILKARLEFMR++++I+ENDFLSFDAMR
Sbjct: 601  VARGKVSEGIDFDHQYGRTVLMIGIPFQYTESRILKARLEFMRENYRIRENDFLSFDAMR 660

Query: 1978 HAAQCLGRVLRGKDDYGIMVLADRRFARKKNQLPKWIAQALNDSDTNLSTDMALATAKKF 2157
            HAAQCLGRVLRGKDDYG+MVLADRRF+RK++QLPKWIAQ L+D+D NLSTDMA++  K+F
Sbjct: 661  HAAQCLGRVLRGKDDYGVMVLADRRFSRKRSQLPKWIAQGLSDADLNLSTDMAISNTKQF 720

Query: 2158 LRSLAQPTNPKDLEGVSIWNIE 2223
            LR++AQPT+PKD EGVS+W+ E
Sbjct: 721  LRTMAQPTDPKDQEGVSVWSYE 742


>Q9P609|B2O8.040|Q9P609 (TrEMBL: Neurospora crassa) Probable excision
            repair protein rhp3.
          Length = 806

 Score = 1135 bits (2936), Expect = 0.0
 Identities = 546/741 (73%), Positives = 642/741 (86%)
 Frame = +1

Query: 1    MKFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 180
            M+F IDDLPVLFPYPRIYPEQY+YM D+KKTLD GGNC+LEMPSGTGKTV+LLSL VAYQ
Sbjct: 1    MEFNIDDLPVLFPYPRIYPEQYAYMVDLKKTLDAGGNCVLEMPSGTGKTVTLLSLIVAYQ 60

Query: 181  MHYPEHRKIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPTI 360
             +YPEHRK++YCSRTMSEIEKAL+EL  LM+FRA  LG  E+FRGLGLTSRKNLCLHP++
Sbjct: 61   QYYPEHRKLIYCSRTMSEIEKALVELRALMKFRAERLGHEEEFRGLGLTSRKNLCLHPSV 120

Query: 361  SKERKGVVVDEKCRRITNGQLKEKIEKGVPTEDSLCSFHEKLYDLEPHNLVPPGVYSFDA 540
             +E+ G +VD +CR +T G +KEK EKG   E   C +H+ L  LEPHNL+P G+++ D 
Sbjct: 121  KREKSGAIVDARCRSLTAGFVKEKREKGENVET--CVYHDNLDLLEPHNLIPNGIWTLDG 178

Query: 541  LIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAHNI 720
            L++Y +E+  CPYFT RRM+  CN+IIYSYHYLLDPKIAERVS++LSKD IV+FDEAHNI
Sbjct: 179  LMRYGEEKKQCPYFTARRMMQHCNVIIYSYHYLLDPKIAERVSKDLSKDCIVVFDEAHNI 238

Query: 721  DNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAEIAR 900
            DNVCIESLS D+T ++L +A+RGA  L   I +MK  D EKLQ+EYE+LVEGL+  +  R
Sbjct: 239  DNVCIESLSTDITQDSLMRATRGAQNLEAKISEMKDSDQEKLQSEYEKLVEGLKGLDEGR 298

Query: 901  DQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSFLQ 1080
             ++ FMANP LP DLL EA+PGNIR+ EHF+AFL+RFIEYLKTRMKV  VISETP SFL 
Sbjct: 299  QEDAFMANPTLPDDLLKEAVPGNIRRAEHFVAFLRRFIEYLKTRMKVRQVISETPPSFLA 358

Query: 1081 HLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLILE 1260
            HLKE T+IE+KPLRFC+ERL+ LVRTLE+T I+D+  L+++ATFATLV+TY+ GF LILE
Sbjct: 359  HLKEYTFIEKKPLRFCAERLTSLVRTLELTNIEDYRPLQEVATFATLVATYEKGFLLILE 418

Query: 1261 PYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVIQE 1440
            PYE++ +  PNP+LHFTCLDA+IAIKPVFDRFSSVIITSGTISPL+MYPKML FETV+QE
Sbjct: 419  PYESDTAKTPNPVLHFTCLDAAIAIKPVFDRFSSVIITSGTISPLEMYPKMLNFETVVQE 478

Query: 1441 SYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVFF 1620
            SYAMTLARRSFLPMIVT+GSDQ SIS+ F++RN+PSVVRNYG+LL EFA+ITPDGMVVFF
Sbjct: 479  SYAMTLARRSFLPMIVTRGSDQASISTSFQVRNEPSVVRNYGNLLTEFARITPDGMVVFF 538

Query: 1621 PSYLYMESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAVLLSV 1800
            PSYLYMESIISMWQ MG+LDEVWKHKLILVETPDAQETSLALETYR AC NGRGA+LL V
Sbjct: 539  PSYLYMESIISMWQGMGILDEVWKHKLILVETPDAQETSLALETYRTACCNGRGAILLCV 598

Query: 1801 ARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQIKENDFLSFDAMRH 1980
            ARGKVSEGIDFDH YGRTVL IG+PFQYTESRILKARLEF+R+ ++I+ENDFLSFDAMRH
Sbjct: 599  ARGKVSEGIDFDHQYGRTVLCIGVPFQYTESRILKARLEFLRETYRIRENDFLSFDAMRH 658

Query: 1981 AAQCLGRVLRGKDDYGIMVLADRRFARKKNQLPKWIAQALNDSDTNLSTDMALATAKKFL 2160
            AAQCLGRVLRGKDDYG+MVLADRRF +K+ QLPKWI QA  +++TNLSTDMA+  A+ FL
Sbjct: 659  AAQCLGRVLRGKDDYGVMVLADRRFMKKRAQLPKWINQAFLEANTNLSTDMAVGNARAFL 718

Query: 2161 RSLAQPTNPKDLEGVSIWNIE 2223
            + +AQP + KD EGVSIW +E
Sbjct: 719  KQMAQPFSAKDQEGVSIWGME 739


>P26659|RAD15|RA15_SCHPO (SP: Schizosaccharomyces pombe (Fission
            yeast)) DNA repair helicase rad15 (EC 3.6.1.-) (RAD3
            homolog) (Protein rhp3).
          Length = 772

 Score = 1098 bits (2839), Expect = 0.0
 Identities = 522/745 (70%), Positives = 642/745 (86%), Gaps = 4/745 (0%)
 Frame = +1

Query: 1    MKFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 180
            MKF+IDDLP+LFPYPRIYPEQY YMCD+K +LD GG  +LEMPSGTGKT+SLLSL V+YQ
Sbjct: 1    MKFYIDDLPILFPYPRIYPEQYQYMCDLKHSLDAGGIALLEMPSGTGKTISLLSLIVSYQ 60

Query: 181  MHYPEHRKIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPTI 360
             HYPEHRK++YCSRTMSEI+KAL EL +LM +R ++LG  E F GLGLTSRKNLCLHP++
Sbjct: 61   QHYPEHRKLIYCSRTMSEIDKALAELKRLMAYRTSQLGYEEPFLGLGLTSRKNLCLHPSV 120

Query: 361  SKERKGVVVDEKCRRITNGQLKEKIEKG--VPTEDSLCSFHEKLYDLEPHNLVPPGVYSF 534
             +E+ G VVD +CR +T G ++E+   G  VPT    C FH+ L DLEPH+L+  GV++ 
Sbjct: 121  RREKNGNVVDARCRSLTAGFVREQRLAGMDVPT----CEFHDNLEDLEPHSLISNGVWTL 176

Query: 535  DALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAH 714
            D + +Y ++   CPYFTVRRM+PFCN+IIYSYHYLLDPKIAERVSRELSKD IV+FDEAH
Sbjct: 177  DDITEYGEKTTRCPYFTVRRMLPFCNVIIYSYHYLLDPKIAERVSRELSKDCIVVFDEAH 236

Query: 715  NIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAEI 894
            NIDNVCIESLS+DLT+ +L+KAS+    L + + ++K  DS+KLQ+EY++LV GL+ A  
Sbjct: 237  NIDNVCIESLSIDLTESSLRKASKSILSLEQKVNEVKQSDSKKLQDEYQKLVRGLQDANA 296

Query: 895  ARDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSF 1074
            A D++ FMANPVLP+D+L EA+PGNIR+ EHFIAFLKRF+EYLKTRMKVLHVI+ETPTSF
Sbjct: 297  ANDEDQFMANPVLPEDVLKEAVPGNIRRAEHFIAFLKRFVEYLKTRMKVLHVIAETPTSF 356

Query: 1075 LQHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLI 1254
            LQH+K++T+I++KPLRFC+ERL+ LVR L+++ ++DF++L+ +  FATLV+TY+ GF LI
Sbjct: 357  LQHVKDITFIDKKPLRFCAERLTSLVRALQISLVEDFHSLQQVVAFATLVATYERGFILI 416

Query: 1255 LEPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVI 1434
            LEP+ETE +TVPNPIL F+CLDASIAIKPVF+RF SVIITSGT+SPLDMYPKML+F TV+
Sbjct: 417  LEPFETENATVPNPILRFSCLDASIAIKPVFERFRSVIITSGTLSPLDMYPKMLQFNTVM 476

Query: 1435 QESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVV 1614
            QESY M+LAR  FLPM+VT+GSDQV+ISS+FE RNDPSVVRNYG++L+EF+KITPDG+V 
Sbjct: 477  QESYGMSLARNCFLPMVVTRGSDQVAISSKFEARNDPSVVRNYGNILVEFSKITPDGLVA 536

Query: 1615 FFPSYLYMESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAVLL 1794
            FFPSYLY+ESI+S WQSMG+LDEVWK+KLILVETPD  ET+LALETYR ACSNGRGAVLL
Sbjct: 537  FFPSYLYLESIVSSWQSMGILDEVWKYKLILVETPDPHETTLALETYRAACSNGRGAVLL 596

Query: 1795 SVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQIKENDFLSFDAM 1974
            SVARGKVSEG+DFDHHYGR V+M GIP+QYTESR+LKARLEF+RD +QI+E DFL+FDAM
Sbjct: 597  SVARGKVSEGVDFDHHYGRAVIMFGIPYQYTESRVLKARLEFLRDTYQIREADFLTFDAM 656

Query: 1975 RHAAQCLGRVLRGKDDYGIMVLADRRFAR--KKNQLPKWIAQALNDSDTNLSTDMALATA 2148
            RHAAQCLGRVLRGKDD+GIMVLAD+R+ R  K+ +LPKWI Q + +  TNLSTDM+LA A
Sbjct: 657  RHAAQCLGRVLRGKDDHGIMVLADKRYGRSDKRTKLPKWIQQYITEGATNLSTDMSLALA 716

Query: 2149 KKFLRSLAQPTNPKDLEGVSIWNIE 2223
            KKFLR++AQP    D EG+S W+++
Sbjct: 717  KKFLRTMAQPFTASDQEGISWWSLD 741


>Q91941|ERCC2/XPD|Q91941 (TrEMBL: Xiphophorus maculatus (Southern
            platyfish)) ERCC2/XPD protein.
          Length = 760

 Score =  847 bits (2188), Expect = 0.0
 Identities = 406/744 (54%), Positives = 552/744 (74%), Gaps = 3/744 (0%)
 Frame = +1

Query: 1    MKFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 180
            MK  I+ L V FPY  IYPEQYSYM ++K+TLD  G+ +LEMPSGTGKT+SLLSL VAYQ
Sbjct: 1    MKLNIEGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ 60

Query: 181  MHYP-EHRKIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPT 357
              +P +  K++YCSRT+ EIEK + EL KLMEF A E GEV +F  L L+SRKNLC+HP 
Sbjct: 61   RAFPLDVTKLIYCSRTVPEIEKVVEELRKLMEFYAKETGEVNNFLALSLSSRKNLCIHPE 120

Query: 358  ISKERKGVVVDEKCRRITNGQLKEKIEKGVPTEDSLCSFHEKLYDLEPHNLVPPGVYSFD 537
            +S  R G  VD KC  +T   ++ +          +C F+E+   +     +P G+Y+ D
Sbjct: 121  VSSLRFGKEVDGKCHSLTASYIRAQRHSN--PNQPVCRFYEEFDAVGRQVPLPAGIYNLD 178

Query: 538  ALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAHN 717
             L  + + +G CPY+  R  I   NI++YSYHYLLDPKIA+ VS+EL+K S+V+FDEAHN
Sbjct: 179  DLKDFGRRKGWCPYYLARYSILHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHN 238

Query: 718  IDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAEIA 897
            IDNVCI+S+S+++T  T+ +     + L   I  +K  D+ KL+ EY +LVEGL++A +A
Sbjct: 239  IDNVCIDSMSVNITRRTVDRCQNNVDTLQNTIHKIKETDAAKLREEYRRLVEGLKEANVA 298

Query: 898  RDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSFL 1077
            R+ ++++ANPVLP ++L EA+PG+IR  EHF+ FL+RF+EYLK R++V HV+ E+   FL
Sbjct: 299  RETDIYLANPVLPDEVLQEAVPGSIRTAEHFVGFLRRFLEYLKARLRVQHVVQESAPQFL 358

Query: 1078 QHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLIL 1257
            + + +   I+RKPLRFC+ERL  L+RTLE+ +I DF+A+  I+ FATLVSTY  GF +I+
Sbjct: 359  KDIFDKVCIDRKPLRFCAERLQCLLRTLEIADIADFSAVTLISNFATLVSTYSQGFTIII 418

Query: 1258 EPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVIQ 1437
            EP+E    T+ NP+LHF+C+D SIAIKPVF RF SVIITSGT+SPLD+YP++L F  V  
Sbjct: 419  EPFEDRTPTIANPVLHFSCMDPSIAIKPVFQRFQSVIITSGTLSPLDIYPRILDFRPVTM 478

Query: 1438 ESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVF 1617
             S+ MTLAR    P+IV +G+DQV++SS+FE R D +V+RNYG+LL+E + + PDG+V F
Sbjct: 479  ASFTMTLARTCLCPLIVGRGNDQVALSSKFETREDFAVIRNYGNLLLEMSAVVPDGIVAF 538

Query: 1618 FPSYLYMESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAVLLS 1797
            F SY+YME+I++ W   G+L+ + K+KLI +ET DA ETS+ALE Y++AC NGRGA+LLS
Sbjct: 539  FTSYVYMENIVASWYEQGILENIQKNKLIFIETQDAAETSMALEKYQEACENGRGAILLS 598

Query: 1798 VARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQIKENDFLSFDAMR 1977
            VARGKVSEGIDF HH+GR V+M G+P+ YT+SRILKARLE++RD FQI+ENDFL+FDAMR
Sbjct: 599  VARGKVSEGIDFVHHFGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMR 658

Query: 1978 HAAQCLGRVLRGKDDYGIMVLADRRFAR--KKNQLPKWIAQALNDSDTNLSTDMALATAK 2151
            HAAQCLGR +RGK DYG+M+ AD+R+AR  K+ +LP+WI + +ND   NL+ D A+  +K
Sbjct: 659  HAAQCLGRAIRGKTDYGLMIFADKRYARSDKRGKLPRWIQEHINDGSLNLTVDEAVQLSK 718

Query: 2152 KFLRSLAQPTNPKDLEGVSIWNIE 2223
             FLR +AQP   +D  G+S+  +E
Sbjct: 719  HFLRQMAQPFRQEDQLGLSLLTLE 742


>O08811|ERCC2|XPD_MOUSE (SP: Mus musculus (Mouse)) TFIIH basal
            transcription factor complex helicase subunit (EC
            3.6.1.-) (DNA-repair protein complementing XP-D cells)
            (Xeroderma pigmentosum group D complementing protein)
            (CXPD) (DNA excision repair protein ERCC-2).
          Length = 760

 Score =  827 bits (2137), Expect = 0.0
 Identities = 401/745 (53%), Positives = 551/745 (73%), Gaps = 4/745 (0%)
 Frame = +1

Query: 1    MKFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 180
            MK  +D L V FPY  IYPEQ+SYM ++K+TLD  G+ +LEMPSGTGKTVSLL+L VAYQ
Sbjct: 1    MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60

Query: 181  MHYP-EHRKIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPT 357
              YP E  K++YCSRT+ EIEK + EL KL+ F   + GE   F GL L+SRKNLC+HP 
Sbjct: 61   RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120

Query: 358  ISKERKGVVVDEKCRRITNGQLKEKIEKGVPTEDSLCSFHEKLYDLEPHNL-VPPGVYSF 534
            ++  R G  VD KC  +T   ++ + ++        C F+E+ +D+    + +P G+Y+ 
Sbjct: 121  VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPH--CRFYEE-FDIHGRQMPLPAGIYNL 177

Query: 535  DALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAH 714
            D L    + +G CPYF  R  I   N+++YSYHYLLDPKIA+ VS+EL++ ++V+FDEAH
Sbjct: 178  DDLKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAH 237

Query: 715  NIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAEI 894
            NIDNVCI+S+S++LT  TL +     + L + +  +K  D ++L++EY +LVEGLR+A +
Sbjct: 238  NIDNVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASV 297

Query: 895  ARDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSF 1074
            AR+ +  +ANPVLP ++L EA+PG+IR  EHF+ FL+R +EY+K R++V HV+ E+P +F
Sbjct: 298  ARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF 357

Query: 1075 LQHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLI 1254
            L  L +   I+RKPLRFC+ERL  L+ TLE+ ++ DF+ L  +A FATLVSTY  GF +I
Sbjct: 358  LSGLAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTII 417

Query: 1255 LEPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVI 1434
            +EP++    T+ NP+LHF+C+DAS+AIKPVF+RF SVIITSGT+SPLD+YPK+L F  V 
Sbjct: 418  IEPFDDRTPTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVT 477

Query: 1435 QESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVV 1614
              ++ MTLAR    PMI+ +G+DQV+ISS+FE R D +V+RNYG+LL+E + + PDG+V 
Sbjct: 478  MATFTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVA 537

Query: 1615 FFPSYLYMESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAVLL 1794
            FF SY YMES ++ W   G+L+ + ++KL+ +ET D  ETS+ALE Y++AC NGRGAVLL
Sbjct: 538  FFTSYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAVLL 597

Query: 1795 SVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQIKENDFLSFDAM 1974
            SVARGKVSEGIDF HHYGR V+M G+P+ YT+SRILKARLE++RD FQI+ENDFL+FDAM
Sbjct: 598  SVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAM 657

Query: 1975 RHAAQCLGRVLRGKDDYGIMVLADRRFAR--KKNQLPKWIAQALNDSDTNLSTDMALATA 2148
            RHAAQC+GR +RGK DYG+MV AD+RFAR  K+ +LP+WI + L DS+ NL+ D  +  A
Sbjct: 658  RHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDSNLNLTVDEGVQVA 717

Query: 2149 KKFLRSLAQPTNPKDLEGVSIWNIE 2223
            K FLR +AQP + +D  G+S+ ++E
Sbjct: 718  KYFLRQMAQPFHREDQLGLSLLSLE 742


>Q8C487|ERCC2|Q8C487 (TrEMBL: Mus musculus (Mouse)) Excision repair
            cross-complementing rodent repair deficiency.
          Length = 760

 Score =  827 bits (2136), Expect = 0.0
 Identities = 400/745 (53%), Positives = 551/745 (73%), Gaps = 4/745 (0%)
 Frame = +1

Query: 1    MKFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 180
            MK  +D L V FPY  IYPEQ+SYM ++K+TLD  G+ +LEMPSGTGKTVSLL+L VAYQ
Sbjct: 1    MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60

Query: 181  MHYP-EHRKIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPT 357
              YP E  K++YCSRT+ EIEK + EL KL+ F   + GE   F GL L+SRKNLC+HP 
Sbjct: 61   RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120

Query: 358  ISKERKGVVVDEKCRRITNGQLKEKIEKGVPTEDSLCSFHEKLYDLEPHNL-VPPGVYSF 534
            ++  R G  VD KC  +T   ++ + ++        C F+E+ +D+    + +P G+Y+ 
Sbjct: 121  VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPH--CRFYEE-FDIHGRQMPLPAGIYNL 177

Query: 535  DALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAH 714
            D L    + +G CPYF  R  I   N+++YSYHYLLDPKIA+ VS+EL++ ++V+FDEAH
Sbjct: 178  DDLKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAH 237

Query: 715  NIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAEI 894
            NIDNVCI+S+S++LT  TL +     + L + +  +K  D ++L++EY +LVEGLR+A +
Sbjct: 238  NIDNVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASV 297

Query: 895  ARDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSF 1074
            AR+ +  +ANPVLP ++L EA+PG+IR  EHF+ FL+R +EY+K R++V HV+ E+P +F
Sbjct: 298  ARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF 357

Query: 1075 LQHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLI 1254
            L  L +   I+RKPLRFC+ERL  L+ TLE+ ++ DF+ L  +A FATLVSTY  GF +I
Sbjct: 358  LSGLAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTII 417

Query: 1255 LEPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVI 1434
            +EP++    T+ NP+LHF+C+DAS+AIKPVF+RF SVIITSGT+SPLD+YPK+L F  V 
Sbjct: 418  IEPFDDRTPTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVT 477

Query: 1435 QESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVV 1614
              ++ MTLAR    PMI+ +G+DQV+ISS+FE R D +V+RNYG+LL+E + + PDG+V 
Sbjct: 478  MATFTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVA 537

Query: 1615 FFPSYLYMESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAVLL 1794
            FF SY YMES ++ W   G+L+ + ++KL+ +ET D  ETS+ALE Y++AC NGRGA+LL
Sbjct: 538  FFTSYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILL 597

Query: 1795 SVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQIKENDFLSFDAM 1974
            SVARGKVSEGIDF HHYGR V+M G+P+ YT+SRILKARLE++RD FQI+ENDFL+FDAM
Sbjct: 598  SVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAM 657

Query: 1975 RHAAQCLGRVLRGKDDYGIMVLADRRFAR--KKNQLPKWIAQALNDSDTNLSTDMALATA 2148
            RHAAQC+GR +RGK DYG+MV AD+RFAR  K+ +LP+WI + L DS+ NL+ D  +  A
Sbjct: 658  RHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDSNLNLTVDEGVQVA 717

Query: 2149 KKFLRSLAQPTNPKDLEGVSIWNIE 2223
            K FLR +AQP + +D  G+S+ ++E
Sbjct: 718  KYFLRQMAQPFHREDQLGLSLLSLE 742


>Q60452|ERCC2|XPD_CRIGR (SP: Cricetulus griseus (Chinese hamster))
            TFIIH basal transcription factor complex helicase subunit
            (EC 3.6.1.-) (DNA-repair protein complementing XP-D
            cells) (Xeroderma pigmentosum group D complementing
            protein) (CXPD) (DNA excision repair protein ERCC-2).
          Length = 760

 Score =  823 bits (2125), Expect = 0.0
 Identities = 400/745 (53%), Positives = 549/745 (73%), Gaps = 4/745 (0%)
 Frame = +1

Query: 1    MKFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 180
            MK  +D L V FPY  IYPEQ+SYM ++K+TLD  G+ +LEMPSGTGKTVSLL+L VAYQ
Sbjct: 1    MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60

Query: 181  MHYP-EHRKIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPT 357
              +P E  K++YCSRT+ EIEK + EL KL+ F   + GE   F GL L+SRKNLC+HP 
Sbjct: 61   RAFPLEVTKLIYCSRTVPEIEKVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPE 120

Query: 358  ISKERKGVVVDEKCRRITNGQLKEKIEKGVPTEDSLCSFHEKLYDLEPHNL-VPPGVYSF 534
            ++  R G  VD KC  +T   ++ + ++        C F+E+ +D     + +P G+Y+ 
Sbjct: 121  VTPLRFGKDVDGKCHSLTASYVRAQYQQDASLPH--CRFYEE-FDAHGRQVPLPAGIYNL 177

Query: 535  DALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAH 714
            D L    + +G CPYF  R  I   N+++YSYHYLLDPKIA+ VS+EL++ ++V+FDEAH
Sbjct: 178  DDLKALGQRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAH 237

Query: 715  NIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAEI 894
            NIDNVCI+S+S++LT  TL +     + L + +  +K  D ++L++EY +LVEGLR+A  
Sbjct: 238  NIDNVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASA 297

Query: 895  ARDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSF 1074
            AR+ +  +ANPVLP ++L EA+PG+IR  EHF+ FL+R +EY+K R++V HV+ E+P +F
Sbjct: 298  ARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF 357

Query: 1075 LQHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLI 1254
            L  L +   I+RKPLRFC+ERL  L+ TLE+ ++ DF+ L  +A FATLVSTY  GF +I
Sbjct: 358  LSGLAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTII 417

Query: 1255 LEPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVI 1434
            +EP++    T+ NPILHF+C+DAS+AIKPVF+RF SVIITSGT+SPLD+YPK+L F  V 
Sbjct: 418  IEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVT 477

Query: 1435 QESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVV 1614
              ++ MTLAR    PMI+ +G+DQV+ISS+FE R D +V+RNYG+LL+E + + PDG+V 
Sbjct: 478  MATFTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVA 537

Query: 1615 FFPSYLYMESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAVLL 1794
            FF SY YMES ++ W   G+L+ + ++KL+ +ET D  ETS+ALE Y++AC NGRGA+LL
Sbjct: 538  FFTSYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILL 597

Query: 1795 SVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQIKENDFLSFDAM 1974
            SVARGKVSEGIDF HHYGR V+M G+P+ YT+SRILKARLE++RD FQI+ENDFL+FDAM
Sbjct: 598  SVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAM 657

Query: 1975 RHAAQCLGRVLRGKDDYGIMVLADRRFAR--KKNQLPKWIAQALNDSDTNLSTDMALATA 2148
            RHAAQC+GR +RGK DYG+MV AD+RFAR  K+ +LP+WI + L DS+ NL+ D  +  A
Sbjct: 658  RHAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDSNLNLTVDEGVQVA 717

Query: 2149 KKFLRSLAQPTNPKDLEGVSIWNIE 2223
            K FLR +AQP + +D  G+S+ ++E
Sbjct: 718  KYFLRQMAQPFHREDQLGLSLLSLE 742


>P18074|ERCC2|XPD_HUMAN (SP: Homo sapiens (Human)) TFIIH basal
            transcription factor complex helicase subunit (EC
            3.6.1.-) (DNA-repair protein complementing XP-D cells)
            (Xeroderma pigmentosum group D complementing protein)
            (CXPD) (DNA excision repair protein ERCC-2).
          Length = 760

 Score =  822 bits (2124), Expect = 0.0
 Identities = 401/745 (53%), Positives = 549/745 (73%), Gaps = 4/745 (0%)
 Frame = +1

Query: 1    MKFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 180
            MK  +D L V FPY  IYPEQ+SYM ++K+TLD  G+ +LEMPSGTGKTVSLL+L +AYQ
Sbjct: 1    MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60

Query: 181  MHYP-EHRKIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPT 357
              YP E  K++YCSRT+ EIEK + EL KL+ F   + GE   F GL L+SRKNLC+HP 
Sbjct: 61   RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120

Query: 358  ISKERKGVVVDEKCRRITNGQLKEKIEKGVPTEDSLCSFHEKLYDLEPHNL-VPPGVYSF 534
            ++  R G  VD KC  +T   ++ + +    T    C F+E+ +D     + +P G+Y+ 
Sbjct: 121  VTPLRFGKDVDGKCHSLTASYVRAQYQHD--TSLPHCRFYEE-FDAHGREVPLPAGIYNL 177

Query: 535  DALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAH 714
            D L    + +G CPYF  R  I   N+++YSYHYLLDPKIA+ VS+EL++ ++V+FDEAH
Sbjct: 178  DDLKALGRRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAH 237

Query: 715  NIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAEI 894
            NIDNVCI+S+S++LT  TL +       L + +  +K  D ++L++EY +LVEGLR+A  
Sbjct: 238  NIDNVCIDSMSVNLTRRTLDRCQGNLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASA 297

Query: 895  ARDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSF 1074
            AR+ +  +ANPVLP ++L EA+PG+IR  EHF+ FL+R +EY+K R++V HV+ E+P +F
Sbjct: 298  ARETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAF 357

Query: 1075 LQHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLI 1254
            L  L +   I+RKPLRFC+ERL  L+ TLE+T++ DF+ L  +A FATLVSTY  GF +I
Sbjct: 358  LSGLAQRVCIQRKPLRFCAERLRSLLHTLEITDLADFSPLTLLANFATLVSTYAKGFTII 417

Query: 1255 LEPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVI 1434
            +EP++    T+ NPILHF+C+DAS+AIKPVF+RF SVIITSGT+SPLD+YPK+L F  V 
Sbjct: 418  IEPFDDRTPTIANPILHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVT 477

Query: 1435 QESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVV 1614
              ++ MTLAR    PMI+ +G+DQV+ISS+FE R D +V+RNYG+LL+E + + PDG+V 
Sbjct: 478  MATFTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVA 537

Query: 1615 FFPSYLYMESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAVLL 1794
            FF SY YMES ++ W   G+L+ + ++KL+ +ET D  ETS+ALE Y++AC NGRGA+LL
Sbjct: 538  FFTSYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILL 597

Query: 1795 SVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQIKENDFLSFDAM 1974
            SVARGKVSEGIDF HHYGR V+M G+P+ YT+SRILKARLE++RD FQI+ENDFL+FDAM
Sbjct: 598  SVARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAM 657

Query: 1975 RHAAQCLGRVLRGKDDYGIMVLADRRFAR--KKNQLPKWIAQALNDSDTNLSTDMALATA 2148
            RHAAQC+GR +RGK DYG+MV AD+RFAR  K+ +LP+WI + L D++ NL+ D  +  A
Sbjct: 658  RHAAQCVGRAIRGKTDYGLMVFADKRFARGDKRGKLPRWIQEHLTDANLNLTVDEGVQVA 717

Query: 2149 KKFLRSLAQPTNPKDLEGVSIWNIE 2223
            K FLR +AQP + +D  G+S+ ++E
Sbjct: 718  KYFLRQMAQPFHREDQLGLSLLSLE 742


>Q9XYZ2|XPD|Q9XYZ2 (TrEMBL: Drosophila melanogaster (Fruit fly)) XPD
            protein.
          Length = 745

 Score =  820 bits (2118), Expect = 0.0
 Identities = 391/716 (54%), Positives = 538/716 (75%), Gaps = 3/716 (0%)
 Frame = +1

Query: 73   MCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQMHYPEH-RKIVYCSRTMSEIEKAL 249
            M ++K++LD  G+C+LEMPSGTGKT +LLSL VAY + +PE  RK++YCSRT+ EIEK +
Sbjct: 1    MLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYMVEHPETVRKLIYCSRTVPEIEKVI 60

Query: 250  IELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPTISKERKGVVVDEKCRRITNGQLKE 429
             EL  LM +          F GL L+SRKN+C+HP +SKER+G  VD KC  +T   ++E
Sbjct: 61   AELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKEREGKAVDGKCYGLTASYIRE 120

Query: 430  KIEKGVPTEDSLCSFHEKLYDLEPHNLVPPGVYSFDALIKYCKEEGTCPYFTVRRMIPFC 609
            + E  + TE  +C + E        + +P GVYS D L +Y +    CPYF  R  I   
Sbjct: 121  RHE--MDTETPICQYFEGFSLEGKESTLPVGVYSIDDLKEYGRSRNWCPYFLARYAIAHA 178

Query: 610  NIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAHNIDNVCIESLSLDLTDETLKKASRG 789
            +I++YSYHYLLDPKIA+ VS+E+S++S V+FDEAHNIDNVCI+S+S+ +   T+++++  
Sbjct: 179  HIVVYSYHYLLDPKIAQVVSKEMSRESCVVFDEAHNIDNVCIDSMSVKINRRTVERSTNA 238

Query: 790  ANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAEIARDQELFMANPVLPQDLLDEAIPGN 969
             N L + ++D++ +D+ +L  EY+++V+GL+ A + RD ++ +ANPVLP D+L E +PGN
Sbjct: 239  LNHLTKLVQDIREEDTNRLNEEYQRMVQGLKDASVQRDTDMILANPVLPNDVLTEVVPGN 298

Query: 970  IRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSFLQHLKELTYIERKPLRFCSERLSLL 1149
            IR  +HF++FL+RFIEY+KTR++V HV+ E+P  FL+ +     IERKPLRFC+ERLS L
Sbjct: 299  IRNADHFLSFLRRFIEYIKTRLRVHHVVQESPAGFLKDISSKICIERKPLRFCAERLSSL 358

Query: 1150 VRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLILEPYETEGSTVPNPILHFTCLDASI 1329
            +RTLE++++ ++ AL  I  FATLVSTY  GF +I+EP++ +  TV NPILHF+CLD+SI
Sbjct: 359  LRTLEISDLTEYGALTLITHFATLVSTYTKGFTIIIEPFDDKTPTVSNPILHFSCLDSSI 418

Query: 1330 AIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVIQESYAMTLARRSFLPMIVTKGSDQV 1509
            A+ PVF RF +V+ITSGT+SP+DMYPK+L F+ V+  S+ MTLAR   LPMIV+KG+DQV
Sbjct: 419  AMAPVFSRFQTVVITSGTLSPMDMYPKILDFDPVVMSSFTMTLARPCLLPMIVSKGNDQV 478

Query: 1510 SISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLYMESIISMWQSMGVLDEVW 1689
            +ISS+FE R D +V+RNYG LL+E AK  PDG+V FF SYLY+ES+++ W   G++D + 
Sbjct: 479  TISSKFETREDTAVIRNYGQLLVEVAKTVPDGIVCFFTSYLYLESVVASWYDQGIVDTLL 538

Query: 1690 KHKLILVETPDAQETSLALETYRKACSNGRGAVLLSVARGKVSEGIDFDHHYGRTVLMIG 1869
            ++KL+ +ET D  ETS AL  Y KAC  GRGAVLL+VARGKVSEG+DFDHHYGR VLM G
Sbjct: 539  RYKLLFIETQDNAETSYALMNYVKACDCGRGAVLLAVARGKVSEGVDFDHHYGRAVLMFG 598

Query: 1870 IPFQYTESRILKARLEFMRDHFQIKENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADR 2049
            IP+ YT+SRILKARL+++RD FQI+ENDFL+FDAMRHAAQC+GR LRGK DYGIM+ AD+
Sbjct: 599  IPYVYTQSRILKARLDYLRDQFQIRENDFLTFDAMRHAAQCVGRALRGKTDYGIMIFADK 658

Query: 2050 RFAR--KKNQLPKWIAQALNDSDTNLSTDMALATAKKFLRSLAQPTNPKDLEGVSI 2211
            RF+R  K+++LPKWI + L DS  NLST+ A+  A+++LR +AQP   +D  G+S+
Sbjct: 659  RFSRHDKRSRLPKWIQEHLVDSFCNLSTEEAVQLARRWLRRMAQPFTREDQLGISL 714


>Q8K223||Q8K223 (TrEMBL: Mus musculus (Mouse)) Similar to excision
            repair cross-complementing rodent repair deficiency,
            complementation group 2.
          Length = 739

 Score =  792 bits (2046), Expect = 0.0
 Identities = 387/744 (52%), Positives = 535/744 (71%), Gaps = 3/744 (0%)
 Frame = +1

Query: 1    MKFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 180
            MK  +D L V FPY  IYPEQ+SYM ++K+TLD  G+ +LEMPSGTGKTVSLL+L VAYQ
Sbjct: 1    MKLNVDGLLVYFPYDYIYPEQFSYMLELKRTLDAKGHGVLEMPSGTGKTVSLLALIVAYQ 60

Query: 181  MHYPEHRKIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPTI 360
                                + + EL KL+ F   + GE   F GL L+SRKNLC+HP +
Sbjct: 61   --------------------RVIEELRKLLSFYEQQEGEKLPFLGLALSSRKNLCIHPEV 100

Query: 361  SKERKGVVVDEKCRRITNGQLKEKIEKGVPTEDSLCSFHEKLYDLEPHNL-VPPGVYSFD 537
            +  R G  VD KC  +T   ++ + ++        C F+E+ +D+    + +P G+Y+ D
Sbjct: 101  TPLRFGKDVDGKCHSLTASYVRAQYQQDASLPH--CRFYEE-FDIHGRQMPLPAGIYNLD 157

Query: 538  ALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAHN 717
             L      +G CPYF  R  I   N+++YSYHYLLDPKIA+ VS+EL++ ++V+FDEAHN
Sbjct: 158  DLKALGHRQGWCPYFLARYSILHANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHN 217

Query: 718  IDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAEIA 897
            IDNVCI+S+S++LT  TL +     + L + +  +K  D ++L++EY +LVEGLR+A +A
Sbjct: 218  IDNVCIDSMSVNLTRRTLDRCQSNLDTLQKTVLRIKETDEQRLRDEYRRLVEGLREASVA 277

Query: 898  RDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSFL 1077
            R+ +  +ANPVLP ++L EA+PG+IR  EHF+ FL+R +EY+K R++V HV+ E+P +FL
Sbjct: 278  RETDAHLANPVLPDEVLQEAVPGSIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFL 337

Query: 1078 QHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLIL 1257
              L +   I+RKPLRFC+ERL  L+ TLE+ ++ DF+ L  +A FATLVSTY  GF +I+
Sbjct: 338  SGLAQRVCIQRKPLRFCAERLRSLLHTLEIADLADFSPLTLLANFATLVSTYAKGFTIII 397

Query: 1258 EPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVIQ 1437
            EP++    T+ NP+LHF+C+DAS+AIKPVF+RF SVIITSGT+SPLD+YPK+L F  V  
Sbjct: 398  EPFDDRTPTIANPVLHFSCMDASLAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTM 457

Query: 1438 ESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVF 1617
             ++ MTLAR    PMI+ +G+DQV+ISS+FE R D +V+RNYG+LL+E + + PDG+V F
Sbjct: 458  ATFTMTLARVCLCPMIIGRGNDQVAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAF 517

Query: 1618 FPSYLYMESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAVLLS 1797
            F SY YMES ++ W   G+L+ + ++KL+ +ET D  ETS+ALE Y++AC NGRGA+LLS
Sbjct: 518  FTSYQYMESTVASWYEQGILENIQRNKLLFIETQDGAETSVALEKYQEACENGRGAILLS 577

Query: 1798 VARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQIKENDFLSFDAMR 1977
            VARGKVSEGIDF HHYGR V+M G+P+ YT+SRILKARLE++RD FQI+ENDFL+FDAMR
Sbjct: 578  VARGKVSEGIDFVHHYGRAVIMFGVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMR 637

Query: 1978 HAAQCLGRVLRGKDDYGIMVLADRRFAR--KKNQLPKWIAQALNDSDTNLSTDMALATAK 2151
            HAAQC+GR +RGK DYG+MV AD+RFAR  K+ +LP+WI + L DS+ NL+ D  +  AK
Sbjct: 638  HAAQCVGRAIRGKTDYGLMVFADKRFARADKRGKLPRWIQEHLTDSNLNLTVDEGVQVAK 697

Query: 2152 KFLRSLAQPTNPKDLEGVSIWNIE 2223
             FLR +AQP + +D  G+S+ ++E
Sbjct: 698  YFLRQMAQPFHREDQLGLSLLSLE 721


>Q8N721|ERCC2|Q8N721 (TrEMBL: Homo sapiens (Human)) Excision repair
            cross-complementing rodent repair deficiency,
            complementation group 2 (Xeroderma pigmentosum D).
          Length = 736

 Score =  792 bits (2046), Expect = 0.0
 Identities = 386/721 (53%), Positives = 532/721 (73%), Gaps = 4/721 (0%)
 Frame = +1

Query: 73   MCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQMHYP-EHRKIVYCSRTMSEIEKAL 249
            M ++K+TLD  G+ +LEMPSGTGKTVSLL+L +AYQ  YP E  K++YCSRT+ EIEK +
Sbjct: 1    MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 60

Query: 250  IELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPTISKERKGVVVDEKCRRITNGQLKE 429
             EL KL+ F   + GE   F GL L+SRKNLC+HP ++  R G  VD KC  +T   ++ 
Sbjct: 61   EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRA 120

Query: 430  KIEKGVPTEDSLCSFHEKLYDLEPHNL-VPPGVYSFDALIKYCKEEGTCPYFTVRRMIPF 606
            + +    T    C F+E+ +D     + +P G+Y+ D L    + +G CPYF  R  I  
Sbjct: 121  QYQHD--TSLPHCRFYEE-FDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILH 177

Query: 607  CNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAHNIDNVCIESLSLDLTDETLKKASR 786
             N+++YSYHYLLDPKIA+ VS+EL++ ++V+FDEAHNIDNVCI+S+S++LT  TL +   
Sbjct: 178  ANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQG 237

Query: 787  GANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAEIARDQELFMANPVLPQDLLDEAIPG 966
                L + +  +K  D ++L++EY +LVEGLR+A  AR+ +  +ANPVLP ++L EA+PG
Sbjct: 238  NLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPG 297

Query: 967  NIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSFLQHLKELTYIERKPLRFCSERLSL 1146
            +IR  EHF+ FL+R +EY+K R++V HV+ E+P +FL  L +   I+RKPLRFC+ERL  
Sbjct: 298  SIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRS 357

Query: 1147 LVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLILEPYETEGSTVPNPILHFTCLDAS 1326
            L+ TLE+T++ DF+ L  +A FATLVSTY  GF +I+EP++    T+ NPILHF+C+DAS
Sbjct: 358  LLHTLEITDLADFSPLTLLANFATLVSTYAKGFTIIIEPFDDRTPTIANPILHFSCMDAS 417

Query: 1327 IAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVIQESYAMTLARRSFLPMIVTKGSDQ 1506
            +AIKPVF+RF SVIITSGT+SPLD+YPK+L F  V   ++ MTLAR    PMI+ +G+DQ
Sbjct: 418  LAIKPVFERFQSVIITSGTLSPLDIYPKILDFHPVTMATFTMTLARVCLCPMIIGRGNDQ 477

Query: 1507 VSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLYMESIISMWQSMGVLDEV 1686
            V+ISS+FE R D +V+RNYG+LL+E + + PDG+V FF SY YMES ++ W   G+L+ +
Sbjct: 478  VAISSKFETREDIAVIRNYGNLLLEMSAVVPDGIVAFFTSYQYMESTVASWYEQGILENI 537

Query: 1687 WKHKLILVETPDAQETSLALETYRKACSNGRGAVLLSVARGKVSEGIDFDHHYGRTVLMI 1866
             ++KL+ +ET D  ETS+ALE Y++AC NGRGA+LLSVARGKVSEGIDF HHYGR V+M 
Sbjct: 538  QRNKLLFIETQDGAETSVALEKYQEACENGRGAILLSVARGKVSEGIDFVHHYGRAVIMF 597

Query: 1867 GIPFQYTESRILKARLEFMRDHFQIKENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLAD 2046
            G+P+ YT+SRILKARLE++RD FQI+ENDFL+FDAMRHAAQC+GR +RGK DYG+MV AD
Sbjct: 598  GVPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHAAQCVGRAIRGKTDYGLMVFAD 657

Query: 2047 RRFAR--KKNQLPKWIAQALNDSDTNLSTDMALATAKKFLRSLAQPTNPKDLEGVSIWNI 2220
            +RFAR  K+ +LP+WI + L D++ NL+ D  +  AK FLR +AQP + +D  G+S+ ++
Sbjct: 658  KRFARGDKRGKLPRWIQEHLTDANLNLTVDEGVQVAKYFLRQMAQPFHREDQLGLSLLSL 717

Query: 2221 E 2223
            E
Sbjct: 718  E 718


>O00836|REPD|O00836 (TrEMBL: Dictyostelium discoideum (Slime mold))
            RepD.
          Length = 776

 Score =  763 bits (1969), Expect = 0.0
 Identities = 380/744 (51%), Positives = 535/744 (71%), Gaps = 3/744 (0%)
 Frame = +1

Query: 1    MKFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 180
            MKF+I+DL V FPY  IYPEQYSYM  +K++LD GG CILEMPSGTGKTVSLLSL  +YQ
Sbjct: 1    MKFYIEDLLVYFPYSYIYPEQYSYMVALKRSLDNGGPCILEMPSGTGKTVSLLSLISSYQ 60

Query: 181  MHYPEHRKIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFR-GLGLTSRKNLCLHPT 357
            +  P   K++YCSRT+ EIE+A  E  +++++R +E+GE       + ++SR+NLC+ P 
Sbjct: 61   VKNPSI-KLIYCSRTVPEIEQATEEARRVLQYRNSEMGEESPKTLCMSMSSRRNLCIQPR 119

Query: 358  ISKERKGVVVDEKCRRITNGQLKEKIEKGVPTEDSLCSFHEKLYDLEPHNLVPPGVYSFD 537
            +S+ER G VVD  CR +T+   +E      PT +  C F E  ++     ++  GVYS +
Sbjct: 120  VSEERDGKVVDALCRELTSSWNRES-----PTSEK-CKFFEN-FESNGKEILLEGVYSLE 172

Query: 538  ALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAHN 717
             L +Y  +   CPYF  R M+ F NI+I+SY YLLDPKIA  +S     +SIV+FDEAHN
Sbjct: 173  DLKEYGLKHQMCPYFLSRHMLNFANIVIFSYQYLLDPKIASLISSSFPSNSIVVFDEAHN 232

Query: 718  IDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAEIA 897
            IDNVCI +LS+++ ++ L  +S+   K+ + IED+K  D ++L++EY++LV GL ++   
Sbjct: 233  IDNVCINALSINIDNKLLDTSSKNIAKINKQIEDIKKVDEKRLKDEYQRLVNGLARSGST 292

Query: 898  RDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSFL 1077
            R  E   ++PVLP D++ EA+PGNIRK   FI+ L+R ++YLK+R+K   ++SE+P +FL
Sbjct: 293  RADET-TSDPVLPNDVIQEAVPGNIRKPSIFISLLRRVVDYLKSRLKSQMLLSESPLAFL 351

Query: 1078 QHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLIL 1257
            Q L   T I  + LRFCS RLS L+RTL + +++ F+ +  IA FATLV TY++GF +I+
Sbjct: 352  QGLYHATQISSRTLRFCSSRLSSLLRTLRINDVNQFSGISLIADFATLVGTYNNGFLIII 411

Query: 1258 EPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVIQ 1437
            EPY    +   + I  F CLDASI +KP+FD++ SV+ITSGT+SPLD+Y KML F   + 
Sbjct: 412  EPYYQRQNNTYDQIFQFCCLDASIGMKPIFDKYRSVVITSGTLSPLDIYTKMLNFRPTVV 471

Query: 1438 ESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVF 1617
            E   M+L R    P I+T+GSDQ+SIS++F++R+D +VVRNYG+LL+E + I PDG++ F
Sbjct: 472  ERLTMSLNRNCICPCILTRGSDQISISTKFDVRSDTAVVRNYGALLVEVSAIVPDGIICF 531

Query: 1618 FPSYLYMESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAVLLS 1797
            F SY YME I+S+W  MG+L+ +  +KLI VET D  E++LAL+ Y+KAC +GRGAVLLS
Sbjct: 532  FTSYSYMEQIVSVWNEMGLLNNILTNKLIFVETSDPAESALALQNYKKACDSGRGAVLLS 591

Query: 1798 VARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQIKENDFLSFDAMR 1977
            VARGKVSEGIDFD+ YGR V++ GIP+  TES++L+ARLEF+RD +QI+EN+FL+FDAMR
Sbjct: 592  VARGKVSEGIDFDNQYGRCVILYGIPYINTESKVLRARLEFLRDRYQIRENEFLTFDAMR 651

Query: 1978 HAAQCLGRVLRGKDDYGIMVLADRRFAR--KKNQLPKWIAQALNDSDTNLSTDMALATAK 2151
             A+QC+GRV+RGK DYGIM+ AD+R+ R  K+N+LP+WI Q       NLSTDMA++ +K
Sbjct: 652  TASQCVGRVIRGKSDYGIMIFADKRYNRLDKRNKLPQWILQFCQPQHLNLSTDMAISLSK 711

Query: 2152 KFLRSLAQPTNPKDLEGVSIWNIE 2223
             FLR + QP + ++  G S+W++E
Sbjct: 712  TFLREMGQPFSREEQLGKSLWSLE 735


>Q9SE44||Q9SE44 (TrEMBL: Arabidopsis thaliana (Mouse-ear cress))
            Nucleotide excision repair protein XP-D homolog.
          Length = 758

 Score =  759 bits (1961), Expect = 0.0
 Identities = 369/729 (50%), Positives = 511/729 (70%), Gaps = 3/729 (0%)
 Frame = +1

Query: 1    MKFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 180
            M F I+D+ V FPY  IYPEQY YM ++K+ LD  G+C+LEMP+GTGKT++LLSL  +Y+
Sbjct: 1    MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR 60

Query: 181  MHYPEHR-KIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPT 357
            +  P+   K+VYC+RT+ E+EK L EL  L +++   LG       LGL+SRKNLC++  
Sbjct: 61   LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTK 120

Query: 358  ISKERKGVVVDEKCRRITNGQLKEKIEKGVPTEDSLCSFHEKLYDLEPHNLVPPGVYSFD 537
            +        VD  CR+ T   ++    +    E  LC F E       + L+PPGVY+ +
Sbjct: 121  VLAAENRDSVDAACRKRTASWVRALSTENPNVE--LCDFFENYEKAAENALLPPGVYTLE 178

Query: 538  ALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAHN 717
             L  + K  G CPYF  R MI F N+I+YSY YLLDPK+A  +S+EL K+S+V+FDEAHN
Sbjct: 179  DLRAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHN 238

Query: 718  IDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAEIA 897
            IDNVCIE+LS+ +   TL+ A+R  NK+ + I+  KA D+ +L+ EY +LVEGL      
Sbjct: 239  IDNVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDL 298

Query: 898  RDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSFL 1077
               + ++ANP LP D+L EA+PGNIR+ EHF+  L+R ++YL  R+   +V  E+P SF+
Sbjct: 299  SGGDQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFV 358

Query: 1078 QHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLIL 1257
              L     IE+K L+FC +RL  L+ TLE+T+ D+F  ++ +  FATLV TY  GF +I+
Sbjct: 359  SSLNSQAGIEQKTLKFCYDRLQSLMLTLEITDTDEFLPIQTVCDFATLVGTYARGFSIII 418

Query: 1258 EPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVIQ 1437
            EPY+     +P+PIL  +C DAS+AIKPVFDRF SV+ITSGT+SP+D+YP++L F  V+ 
Sbjct: 419  EPYDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFTPVVS 478

Query: 1438 ESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVF 1617
             S+ M++ R    PM++T+GSDQ+ +S++F++R+DP VVRNYG LL+E   I PDG+V F
Sbjct: 479  RSFKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCF 538

Query: 1618 FPSYLYMESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAVLLS 1797
            F SY YM+ II+ W   G+L+E+ + KL+ +ET D  ET+LAL+ YR+AC  GRGAV  S
Sbjct: 539  FVSYSYMDGIIATWNETGILEEIMQQKLVFIETQDVVETTLALDNYRRACDCGRGAVFFS 598

Query: 1798 VARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQIKENDFLSFDAMR 1977
            VARGKV+EGIDFD HYGR V+M G+PFQYT S+IL+ARLE++ D FQIKE DFL+FDA+R
Sbjct: 599  VARGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILRARLEYLHDTFQIKEGDFLTFDALR 658

Query: 1978 HAAQCLGRVLRGKDDYGIMVLADRRFAR--KKNQLPKWIAQALNDSDTNLSTDMALATAK 2151
             AAQC+GRV+R K DYG+M+ AD+R++R  K+++LP WI   L D+  NLSTDMA+  A+
Sbjct: 659  QAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIAR 718

Query: 2152 KFLRSLAQP 2178
            +FLR +AQP
Sbjct: 719  EFLRKMAQP 727


>Q8W4M7|AT1G03190,|Q8W4M7 (TrEMBL: Arabidopsis thaliana (Mouse-ear
            cress)) Strong similarity to nucleotide excision repair
            protein (Putative DNA repair protein) (DNA
            repair/transcription factor protein).
          Length = 758

 Score =  758 bits (1958), Expect = 0.0
 Identities = 369/729 (50%), Positives = 510/729 (69%), Gaps = 3/729 (0%)
 Frame = +1

Query: 1    MKFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 180
            M F I+D+ V FPY  IYPEQY YM ++K+ LD  G+C+LEMP+GTGKT++LLSL  +Y+
Sbjct: 1    MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR 60

Query: 181  MHYPEHR-KIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPT 357
            +  P+   K+VYC+RT+ E+EK L EL  L +++   LG       LGL+SRKNLC++  
Sbjct: 61   LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTK 120

Query: 358  ISKERKGVVVDEKCRRITNGQLKEKIEKGVPTEDSLCSFHEKLYDLEPHNLVPPGVYSFD 537
            +        VD  CR+ T   ++    +    E  LC F E       + L+PPGVY+ +
Sbjct: 121  VLAAENRDSVDAACRKRTASWVRALSTENPNVE--LCDFFENYEKAAENALLPPGVYTLE 178

Query: 538  ALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAHN 717
             L  + K  G CPYF  R MI F N+I+YSY YLLDPK+A  +S+EL K+S+V+FDEAHN
Sbjct: 179  DLRAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHN 238

Query: 718  IDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAEIA 897
            IDNVCIE+LS+ +   TL+ A+R  NK+ + I+  KA D+ +L+ EY +LVEGL      
Sbjct: 239  IDNVCIEALSVSVRRVTLEGANRNLNKIRQEIDRFKATDAGRLRAEYNRLVEGLALRGDL 298

Query: 898  RDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSFL 1077
               + ++ANP LP D+L EA+PGNIR+ EHF+  L+R ++YL  R+   +V  E+P SF+
Sbjct: 299  SGGDQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLDTENVEKESPVSFV 358

Query: 1078 QHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLIL 1257
              L     IE+K L+FC +RL  L+ TLE+T+ D+F  ++ +  FATLV TY  GF +I+
Sbjct: 359  SSLNSQAGIEQKTLKFCYDRLQSLMLTLEITDTDEFLPIQTVCDFATLVGTYARGFSIII 418

Query: 1258 EPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVIQ 1437
            EPY+     +P+PIL  +C DAS+AIKPVFDRF SV+ITSGT+SP+D+YP++L F  V+ 
Sbjct: 419  EPYDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPIDLYPRLLNFTPVVS 478

Query: 1438 ESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVF 1617
             S+ M++ R    PM++T+GSDQ+ +S++F++R+DP VVRNYG LL+E   I PDG+V F
Sbjct: 479  RSFKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLVEMVSIVPDGVVCF 538

Query: 1618 FPSYLYMESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAVLLS 1797
            F SY YM+ II+ W   G+L E+ + KL+ +ET D  ET+LAL+ YR+AC  GRGAV  S
Sbjct: 539  FVSYSYMDGIIATWNETGILKEIMQQKLVFIETQDVVETTLALDNYRRACDCGRGAVFFS 598

Query: 1798 VARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQIKENDFLSFDAMR 1977
            VARGKV+EGIDFD HYGR V+M G+PFQYT S+IL+ARLE++ D FQIKE DFL+FDA+R
Sbjct: 599  VARGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILRARLEYLHDTFQIKEGDFLTFDALR 658

Query: 1978 HAAQCLGRVLRGKDDYGIMVLADRRFAR--KKNQLPKWIAQALNDSDTNLSTDMALATAK 2151
             AAQC+GRV+R K DYG+M+ AD+R++R  K+++LP WI   L D+  NLSTDMA+  A+
Sbjct: 659  QAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAHLNLSTDMAIHIAR 718

Query: 2152 KFLRSLAQP 2178
            +FLR +AQP
Sbjct: 719  EFLRKMAQP 727


>Q9ZVS1|F15K9.20|Q9ZVS1 (TrEMBL: Arabidopsis thaliana (Mouse-ear
            cress)) F15K9.20 protein.
          Length = 735

 Score =  737 bits (1903), Expect = 0.0
 Identities = 363/734 (49%), Positives = 503/734 (68%), Gaps = 16/734 (2%)
 Frame = +1

Query: 1    MKFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 180
            M F I+D+ V FPY  IYPEQY YM ++K+ LD  G+C+LEMP+GTGKT++LLSL  +Y+
Sbjct: 1    MIFKIEDVTVYFPYDNIYPEQYEYMVELKRALDAKGHCLLEMPTGTGKTIALLSLITSYR 60

Query: 181  MHYPEHR-KIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPT 357
            +  P+   K+VYC+RT+ E+EK L EL  L +++   LG       LGL+SRKNLC++  
Sbjct: 61   LSRPDSPIKLVYCTRTVHEMEKTLGELKLLHDYQVRHLGTQAKILALGLSSRKNLCVNTK 120

Query: 358  ISKERKGVVVDEKCRRITNGQLKEKIEKGVPTEDSLCSFHEKLYDLEPHNLVPPGVYSFD 537
            +        VD  CR+ T   ++    +    E  LC F E       + L+PPGVY+ +
Sbjct: 121  VLAAENRDSVDAACRKRTASWVRALSTENPNVE--LCDFFENYEKAAENALLPPGVYTLE 178

Query: 538  ALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAHN 717
             L  + K  G CPYF  R MI F N+I+YSY YLLDPK+A  +S+EL K+S+V+FDEAHN
Sbjct: 179  DLRAFGKNRGWCPYFLARHMIQFANVIVYSYQYLLDPKVAGFISKELQKESVVVFDEAHN 238

Query: 718  IDNVCIESLSLDLTDETLKKASRGANKLGEAIED-------------MKAQDSEKLQNEY 858
            IDNVCIE+LS+ +   TL+ A+R  NK+ + I+               KA D+ +L+ EY
Sbjct: 239  IDNVCIEALSVSVRRVTLEGANRNLNKIRQEIDSSYYIIEIVQLVGRFKATDAGRLRAEY 298

Query: 859  EQLVEGLRQAEIARDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMK 1038
             +LVEGL         + ++ANP LP D+L EA+PGNIR+ EHF+  L+R ++YL  R+ 
Sbjct: 299  NRLVEGLALRGDLSGGDQWLANPALPHDILKEAVPGNIRRAEHFVHVLRRLLQYLGVRLD 358

Query: 1039 VLHVISETPTSFLQHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFAT 1218
              +V  E+P SF+  L     IE+K L+FC +RL  L+ TLE+T+ D+F  ++ +  FAT
Sbjct: 359  TENVEKESPVSFVSSLNSQAGIEQKTLKFCYDRLQSLMLTLEITDTDEFLPIQTVCDFAT 418

Query: 1219 LVSTYDSGFQLILEPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLD 1398
            LV TY  GF +I+EPY+     +P+PIL  +C DAS+AIKPVFDRF SV+ITSGT+SP+D
Sbjct: 419  LVGTYARGFSIIIEPYDERMPHIPDPILQLSCHDASLAIKPVFDRFQSVVITSGTLSPID 478

Query: 1399 MYPKMLKFETVIQESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLI 1578
            +YP++L F  V+  S+ M++ R    PM++T+GSDQ+ +S++F++R+DP VVRNYG LL+
Sbjct: 479  LYPRLLNFTPVVSRSFKMSMTRDCICPMVLTRGSDQLPVSTKFDMRSDPGVVRNYGKLLV 538

Query: 1579 EFAKITPDGMVVFFPSYLYMESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYR 1758
            E   I PDG+V FF SY YM+ II+ W   G+L E+ + KL+ +ET D  ET+LAL+ YR
Sbjct: 539  EMVSIVPDGVVCFFVSYSYMDGIIATWNETGILKEIMQQKLVFIETQDVVETTLALDNYR 598

Query: 1759 KACSNGRGAVLLSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQ 1938
            +AC  GRGAV  SVARGKV+EGIDFD HYGR V+M G+PFQYT S+IL+ARLE++ D FQ
Sbjct: 599  RACDCGRGAVFFSVARGKVAEGIDFDRHYGRLVVMYGVPFQYTLSKILRARLEYLHDTFQ 658

Query: 1939 IKENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFAR--KKNQLPKWIAQALNDSD 2112
            IKE DFL+FDA+R AAQC+GRV+R K DYG+M+ AD+R++R  K+++LP WI   L D+ 
Sbjct: 659  IKEGDFLTFDALRQAAQCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILSHLRDAH 718

Query: 2113 TNLSTDMALATAKK 2154
             NLSTDMA+  A++
Sbjct: 719  LNLSTDMAIHIARE 732


>Q7ZWH2||Q7ZWH2 (TrEMBL: Brachydanio rerio (Zebrafish) (Danio rerio))
            Similar to excision repair cross-complementing rodent
            repair deficiency, complementation group 2.
          Length = 643

 Score =  690 bits (1780), Expect = 0.0
 Identities = 331/623 (53%), Positives = 456/623 (73%), Gaps = 1/623 (0%)
 Frame = +1

Query: 1    MKFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 180
            MK  ID L V FPY  IYPEQYSYM ++K+TLD  G+ +LEMPSGTGKT+SLLSL VAYQ
Sbjct: 1    MKLNIDGLLVYFPYDYIYPEQYSYMLELKRTLDAKGHGVLEMPSGTGKTISLLSLIVAYQ 60

Query: 181  MHYP-EHRKIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPT 357
              YP E  K+VYCSRT+ EIEK + EL KLM++ + + G   DF  L L+SRKNLC+HP 
Sbjct: 61   KTYPLEVTKLVYCSRTVPEIEKVVEELRKLMDYYSKQTGVKNDFLALALSSRKNLCIHPE 120

Query: 358  ISKERKGVVVDEKCRRITNGQLKEKIEKGVPTEDSLCSFHEKLYDLEPHNLVPPGVYSFD 537
            +S  R G  VD KC  +T   ++ + +        +C F+E+  ++     +PPG+Y+ D
Sbjct: 121  VSSLRFGKEVDGKCHSLTASYIRAQHQSN--PNQPVCQFYEEFDNVGRQVPIPPGIYNLD 178

Query: 538  ALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAHN 717
             L  + + +G CPYF  R  +   NI++YSYHYLLDPKIA+ VS+EL+K S+V+FDEAHN
Sbjct: 179  DLKDFGRRKGWCPYFLARYALLHANIVVYSYHYLLDPKIADLVSKELAKKSVVVFDEAHN 238

Query: 718  IDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAEIA 897
            IDNVCI+S+S+++T  TL +       L   I  +K  D+ KL+ EY +LVEGL++A +A
Sbjct: 239  IDNVCIDSMSVNITRRTLDRCQTNVETLQNTISRIKETDAAKLREEYRRLVEGLKEANVA 298

Query: 898  RDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSFL 1077
            R+ +++++NPVLP ++L EA+PG+IR  EHF+ F+KRF+EYLK R+++ HV+ E+   FL
Sbjct: 299  RETDIYLSNPVLPDEILQEAVPGSIRTAEHFVGFMKRFLEYLKARLRIHHVVQESAPQFL 358

Query: 1078 QHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLIL 1257
            + + E   I+RKPLRFC+ERL  L+RTLE+ +I DF+ +  I+ FATLVSTY  GF +I+
Sbjct: 359  KDIFEKVCIDRKPLRFCAERLRSLLRTLEIADIADFSPITLISHFATLVSTYSKGFTIII 418

Query: 1258 EPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVIQ 1437
            EP+E +  T+ NP+LHF+C+D SIAIKPVF RF +VIITSGT+SPLD+YP++L F  V  
Sbjct: 419  EPFEDKTPTIANPVLHFSCMDPSIAIKPVFGRFQTVIITSGTLSPLDIYPRILDFRPVTM 478

Query: 1438 ESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVF 1617
             S+ MTLAR    P+IV +G+DQV+++S+FE R D +V+RNYG+LL+E + I PDG+V F
Sbjct: 479  ASFTMTLARTCLCPLIVGRGNDQVAMTSKFETREDFAVIRNYGNLLLEMSAIVPDGIVAF 538

Query: 1618 FPSYLYMESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAVLLS 1797
            F SY+YME+I++ W   G+L+ + ++KLI +ET DA ETS+ALE Y++AC NGRGA+LLS
Sbjct: 539  FTSYMYMENIVASWYEQGILENIQRNKLIFIETQDAAETSMALEKYQEACENGRGAILLS 598

Query: 1798 VARGKVSEGIDFDHHYGRTVLMI 1866
            VARGKVSEGIDF HH+ R+ L +
Sbjct: 599  VARGKVSEGIDFVHHHVRSALCL 621


>Q8SRT4|ECU06_0200|Q8SRT4 (TrEMBL: Encephalitozoon cuniculi) DNA
            repair helicase of the RAD3/XPD subfamily.
          Length = 742

 Score =  683 bits (1762), Expect = 0.0
 Identities = 357/748 (47%), Positives = 497/748 (66%), Gaps = 23/748 (3%)
 Frame = +1

Query: 1    MKFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQ 180
            MK  ID++ V FPY  +YPEQ  YM ++K++LD  G+C++EMPSGTGKTV+LLS+T++YQ
Sbjct: 1    MKIHIDEVLVYFPYSSVYPEQLKYMREVKRSLDNKGHCLIEMPSGTGKTVALLSMTISYQ 60

Query: 181  MHYPE---HRKIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLH 351
            +H      H K+VYCSRT+ E+EKAL EL +++E+         +F GLGLT RKNLC++
Sbjct: 61   LHMKSKNVHFKVVYCSRTVPEVEKALKELDRVVEYIKKH--RPIEFLGLGLTGRKNLCIN 118

Query: 352  PTISKERKGVVVDEKCRRITNGQLKEKIEKGVPTEDSLCSFHEKLYDLEPHNLVPPGVYS 531
                K      VD  CRR+ N   + K           C F+E L D      VP  VY 
Sbjct: 119  KAALKSFN---VDVACRRLVNKLAESK-----------CDFYENLADFRE---VPVAVYD 161

Query: 532  FDALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEA 711
            F  L +  +++G CPY+ VRR IP C+ IIY Y+YL+DP+I   VS EL  +S+VIFDEA
Sbjct: 162  FLQLKEMGEKKGICPYYLVRRSIPVCDCIIYPYNYLIDPRICAIVSSELGPNSVVIFDEA 221

Query: 712  HNIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAE 891
            HNID+ CIE LS+++    L+ ASR    L   ++  K      +Q  YE++ E L    
Sbjct: 222  HNIDSHCIEVLSIEIRRNVLEGASRAIGNLENLLKRGKPASGVDIQ--YEKVREKL-VGP 278

Query: 892  IARDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTS 1071
            +      + A+     + L    PGN+R   HF++ LKR  E+ KT++K  H+ +E+  S
Sbjct: 279  VPESIPYYYASGEGNYEFL----PGNLRNSFHFVSALKRITEFFKTKLKTTHLTTESTES 334

Query: 1072 FLQHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQL 1251
            F + ++EL+++E+K LRFCS+RL +L ++L + + +D   LK +A F+T+VS Y  GF +
Sbjct: 335  FCKSIRELSFVEKKALRFCSQRLGMLSQSLGLDD-EDMGHLKTVADFSTMVSMYSKGFVV 393

Query: 1252 ILEPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETV 1431
            I EP++++ STV NP L   CLD+SIAI PVF RF +VIITSGT+SP+DMYPK+L F   
Sbjct: 394  IFEPFDSQASTVFNPTLRLACLDSSIAISPVFARFRNVIITSGTMSPIDMYPKILNFVPS 453

Query: 1432 IQESYAMTLARRSFLPMIVTKGSDQVSI------------------SSRFEIRNDPSVVR 1557
                   TL R S  P+I+TKG+DQ+++                  ++ F +R+DPSVVR
Sbjct: 454  RIAEIGATLDRNSISPLIITKGNDQMTLRALSDDMETTDACSGDVLTTSFSLRSDPSVVR 513

Query: 1558 NYGSLLIEFAKITPDGMVVFFPSYLYMESIISMWQSMGVLDEVWKHKLILVETPDAQETS 1737
            NYG L++E +K+ PDG+V FFPSY+YME I+S+W    +++E+ K+KL+ VETPD +ET 
Sbjct: 514  NYGHLMVELSKVVPDGIVCFFPSYMYMEEIVSLWAETSIINEISKNKLVFVETPDGRETE 573

Query: 1738 LALETYRKACSNGRGAVLLSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLE 1917
            LAL  Y++AC NGRG +L SVARGKVSEG+DF+  YGR V+M+G+PFQYTES  LK RL+
Sbjct: 574  LALANYKRACDNGRGGMLFSVARGKVSEGVDFEDGYGRCVVMLGVPFQYTESVRLKKRLD 633

Query: 1918 FMRDHFQIKENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFAR--KKNQLPKWIA 2091
            F+R+ + IKE DFL+FDAMRHAAQCLGRVLR K+DYG+M+LAD RF R  KK++LPKWI 
Sbjct: 634  FLREEYGIKEYDFLTFDAMRHAAQCLGRVLRNKNDYGLMILADERFERNDKKSKLPKWIR 693

Query: 2092 QALNDSDTNLSTDMALATAKKFLRSLAQ 2175
              ++  ++NLS DMAL+ A++F R +AQ
Sbjct: 694  NCIDGGNSNLSVDMALSIARRFFREMAQ 721


>Q9N3L2|Y50D7A.2|Q9N3L2 (TrEMBL: Caenorhabditis elegans) Hypothetical
            protein Y50D7A.2.
          Length = 606

 Score =  619 bits (1595), Expect = e-176
 Identities = 302/558 (54%), Positives = 416/558 (74%), Gaps = 2/558 (0%)
 Frame = +1

Query: 556  KEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAHNIDNVCI 735
            +E+  CPYFT R+ I   +I++YSYHY+LDPKIAE VS++ S+ S+V+FDEAHNIDNVCI
Sbjct: 34   REKKICPYFTARQAINRAHIVVYSYHYILDPKIAELVSKDFSRKSVVVFDEAHNIDNVCI 93

Query: 736  ESLSLDLTDETLKKASRGANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAEIARDQELF 915
            ES+S+ ++ +   +A +    L   +  MK+ +SEKLQ+EY++LVEGL++ E  R  +  
Sbjct: 94   ESMSVAISQKNADRALQELQSLEGVVNRMKSSNSEKLQSEYDKLVEGLKRTERERANDER 153

Query: 916  MANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSFLQHLKEL 1095
            +ANPVLP  +L EA+PGNIR+  HF+ FLKRF+EY++ R++   V+ E+P +F++ + + 
Sbjct: 154  LANPVLPDQILHEAVPGNIRQANHFLLFLKRFVEYIRHRLRTHQVLIESPAAFMKDILDR 213

Query: 1096 TYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLILEPYETE 1275
              IERKP+RFC+ERLS LV+TLE+T+  D  AL  + T  TLVSTY  GF +I+EP +  
Sbjct: 214  MCIERKPMRFCAERLSNLVKTLEITDNGDVWALSQVTTLCTLVSTYSKGFSVIVEPQD-- 271

Query: 1276 GSTVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVIQESYAMT 1455
            GS +   ++  +C DASIAI+PV  RF SVIITSGT+SPL+MYPK+L F+  +  S+ MT
Sbjct: 272  GSQLA--VITLSCHDASIAIRPVMSRFQSVIITSGTLSPLEMYPKVLDFDPSVIASFTMT 329

Query: 1456 LARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLY 1635
            LAR    P++V +G+DQV+++SRFE R D +V+RNYG+L++E A + PDGMVVFF SYLY
Sbjct: 330  LARPCLSPLVVARGNDQVAMTSRFEQRADVAVIRNYGNLVLEMASLVPDGMVVFFTSYLY 389

Query: 1636 MESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAVLLSVARGKV 1815
            ME++I +W    ++DE+ K+KL+ +ET DA ETS ALE Y +AC +GRGAVL SVARGKV
Sbjct: 390  MENVIGVWYEQHIIDELMKYKLLFIETNDALETSAALEKYVEACDSGRGAVLFSVARGKV 449

Query: 1816 SEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQIKENDFLSFDAMRHAAQCL 1995
            SEGIDF HH GR V+M+GIP+ YTESR+L+ARLE++RD F IKENDFL+FDAMRH AQC+
Sbjct: 450  SEGIDFSHHLGRCVIMLGIPYMYTESRVLRARLEYLRDQFGIKENDFLTFDAMRHTAQCM 509

Query: 1996 GRVLRGKDDYGIMVLADRRFAR--KKNQLPKWIAQALNDSDTNLSTDMALATAKKFLRSL 2169
            GR LR K DYG+MV AD+RF+R  K+ +LP+W+ + L  + TNLS D A   A+++L  +
Sbjct: 510  GRALRSKTDYGLMVFADKRFSRNDKRGKLPRWMQEYLEPACTNLSIDEAAQVARRWLTLM 569

Query: 2170 AQPTNPKDLEGVSIWNIE 2223
            AQP   +   GVS+ + E
Sbjct: 570  AQPFEKEHQLGVSLLDKE 587


>Q8WSK4|RAD3|Q8WSK4 (TrEMBL: Plasmodium falciparum) RAD3-like DNA
            helicase.
          Length = 1056

 Score =  422 bits (1085), Expect = e-117
 Identities = 194/421 (46%), Positives = 303/421 (71%), Gaps = 3/421 (0%)
 Frame = +1

Query: 922  NPVLPQDLLDEA-IPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSFLQHLKELT 1098
            +P+L +D++    IPGNIRK EHF+  ++  + YLK  + +  + SE P SFL   ++ T
Sbjct: 602  SPLLMEDIIKNVVIPGNIRKSEHFLNLMRIVVVYLKKYINIYDITSEGPLSFLYKFEKDT 661

Query: 1099 YIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLILEPYETEG 1278
             ++    ++C +RL  L+  L++  I+D+++L  +  F TL+  Y  GF +I EPY  E 
Sbjct: 662  KLDTSFFKYCFDRLKSLLNNLQIVNIEDYSSLNIVCNFCTLLGNYFKGFIIICEPYP-EA 720

Query: 1279 STVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVIQESYAMTL 1458
            + + +P++ F CLD+SIA+K V +++ S+I+TSGTI+PL++YPK+L F+TV+  S+ M+ 
Sbjct: 721  TGIYDPLIQFACLDSSIAMKTVINKYKSIILTSGTITPLELYPKLLNFKTVLTASFPMSF 780

Query: 1459 ARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLYM 1638
             R    P+IVTKGSD + +SS+F +RND SV++NYG LL++  K  PDG+V +FPSY+YM
Sbjct: 781  DRNCVCPLIVTKGSDLIPLSSQFSLRNDLSVIKNYGILLVDMCKCIPDGIVAYFPSYIYM 840

Query: 1639 ESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAVLLSVARGKVS 1818
            E +IS W  +GV+  + ++KLI +ET D   T++AL  ++KAC  G+GAV LS+ RGK++
Sbjct: 841  EQVISSWYELGVIANILEYKLIFIETKDIVSTTIALHNFKKACDLGKGAVFLSICRGKIA 900

Query: 1819 EGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQIKENDFLSFDAMRHAAQCLG 1998
            EGIDFD HYG+ V++ GIP+QYT SRILK+RL+F+++ + I+EN+FL+FDAMR A+QC+G
Sbjct: 901  EGIDFDKHYGKCVILFGIPYQYTLSRILKSRLDFLKETYNIQENEFLTFDAMRQASQCVG 960

Query: 1999 RVLRGKDDYGIMVLADRRFAR--KKNQLPKWIAQALNDSDTNLSTDMALATAKKFLRSLA 2172
            R++R K DYGIM+ +D R+A+  KKN+LP WI + ++ S+ NL+   A+  +K+FL +++
Sbjct: 961  RIIRNKKDYGIMIFSDIRYAKHDKKNKLPPWIIKCMDISNINLTVTTAVDISKQFLLNMS 1020

Query: 2173 Q 2175
            Q
Sbjct: 1021 Q 1021



 Score =  115 bits (289), Expect = 2e-24
 Identities = 50/93 (53%), Positives = 73/93 (78%)
 Frame = +1

Query: 7   FFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQMH 186
           F +DD+ + FPY  IYPEQY+YM  +KKTLD  G+C+LEMP+GTGKTV++ SL  +YQ H
Sbjct: 4   FNLDDVEIFFPYDYIYPEQYAYMKYLKKTLDSEGHCVLEMPTGTGKTVAIFSLITSYQYH 63

Query: 187 YPEHRKIVYCSRTMSEIEKALIELHKLMEFRAN 285
             +  K ++C+RT++E+EK+LIEL K++++R N
Sbjct: 64  KKDEGKFIFCTRTVAEMEKSLIELKKVIQYRIN 96



 Score =  108 bits (269), Expect = 4e-22
 Identities = 72/278 (25%), Positives = 134/278 (48%), Gaps = 59/278 (21%)
 Frame = +1

Query: 286 ELGEVEDFRGLGLTSRKNLCLHPTISKERKGVVVDEKCRRITNGQLKEK----------- 432
           E GE  +   +G+++R+ +C++  +  + +   +DE+CR++T   ++EK           
Sbjct: 169 EFGENSEILAIGISARRCMCINDKVLLKHEREKIDEECRKLTATFIREKKYINNKIDNEI 228

Query: 433 ----IEK----------GVPTED-----------------SLCSFHEKLYDLEPHNLVPP 519
               ++K           +  ED                  LC ++E       ++L+ P
Sbjct: 229 YHPNVDKISDFILRNRHHLDIEDYFDIYNSRNSLEEYDNIGLCGYYENYKKEFLYDLIKP 288

Query: 520 GVYSFDALIKYCKEEGT--------CPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVS-- 669
           GVY+ + L   CK            CPYF  +++I    +II +Y Y++DPK+++ +   
Sbjct: 289 GVYTIEDLKVLCKNYKNKENVNVPICPYFCAKKIIEISKVIILNYQYVIDPKVSKALFSW 348

Query: 670 -------RELSKDSIVIFDEAHNIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKA 828
                     +K+ I++FDEAHNID+VC+E+LS+++    L KAS    KL + IE  K 
Sbjct: 349 KDMNKNVHLKNKNDIIVFDEAHNIDSVCLEALSVNIDRNILNKASMNITKLMKKIEQSKM 408

Query: 829 QDSEKLQNEYEQLVEGLRQAEIARDQELFMANPVLPQD 942
            + +KL+ E  +++E ++  +   +Q L + N V+  D
Sbjct: 409 LNEQKLKEECNKILEKIKLQKC--NQSLNVTNNVINID 444


>Q8I2H7|PFI1650W|Q8I2H7 (TrEMBL: Plasmodium falciparum (isolate 3D7))
            DNA excision-repair helicase, putative.
          Length = 1056

 Score =  421 bits (1082), Expect = e-116
 Identities = 193/421 (45%), Positives = 303/421 (71%), Gaps = 3/421 (0%)
 Frame = +1

Query: 922  NPVLPQDLLDEA-IPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSFLQHLKELT 1098
            +P+L +D++    IPGNIRK EHF+  ++  + YLK  + +  + SE P SFL   ++ T
Sbjct: 602  SPLLMEDIIKNVVIPGNIRKSEHFLNLMRIVVVYLKKYINIYDITSEGPLSFLYKFEKDT 661

Query: 1099 YIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLILEPYETEG 1278
             ++    ++C +RL  L+  L++  I+D+++L  +  F TL+  Y  GF +I EPY  E 
Sbjct: 662  KLDTSFFKYCFDRLKSLLNNLQIVNIEDYSSLNIVCNFCTLLGNYFKGFIIICEPYP-EA 720

Query: 1279 STVPNPILHFTCLDASIAIKPVFDRFSSVIITSGTISPLDMYPKMLKFETVIQESYAMTL 1458
            + + +P++ F CLD+SIA+K V +++ S+I+TSGTI+PL++YPK+L F+TV+  S+ M+ 
Sbjct: 721  TGIYDPLIQFACLDSSIAMKTVINKYKSIILTSGTITPLELYPKLLNFKTVLTASFPMSF 780

Query: 1459 ARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLYM 1638
             R    P+IVTKGSD + +SS+F +RND SV++NYG LL++  K  PDG+V +FPSY+YM
Sbjct: 781  DRNCVCPLIVTKGSDLIPLSSQFSLRNDLSVIKNYGILLVDMCKCIPDGIVAYFPSYIYM 840

Query: 1639 ESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAVLLSVARGKVS 1818
            E +IS W  +GV+  + ++KLI +ET D   T++AL  ++KAC  G+GAV LS+ RGK++
Sbjct: 841  EQVISSWYELGVIANILEYKLIFIETKDIVSTTIALHNFKKACDLGKGAVFLSICRGKIA 900

Query: 1819 EGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQIKENDFLSFDAMRHAAQCLG 1998
            EGIDFD HYG+ V++ GIP+QYT S+ILK+RL+F+++ + I+EN+FL+FDAMR A+QC+G
Sbjct: 901  EGIDFDKHYGKCVILFGIPYQYTLSKILKSRLDFLKETYNIQENEFLTFDAMRQASQCVG 960

Query: 1999 RVLRGKDDYGIMVLADRRFAR--KKNQLPKWIAQALNDSDTNLSTDMALATAKKFLRSLA 2172
            R++R K DYGIM+ +D R+A+  KKN+LP WI + ++ S+ NL+   A+  +K+FL +++
Sbjct: 961  RIIRNKKDYGIMIFSDIRYAKHDKKNKLPPWIIKCMDISNINLTVTTAVDISKQFLLNMS 1020

Query: 2173 Q 2175
            Q
Sbjct: 1021 Q 1021



 Score =  115 bits (289), Expect = 2e-24
 Identities = 50/93 (53%), Positives = 73/93 (78%)
 Frame = +1

Query: 7   FFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQMH 186
           F +DD+ + FPY  IYPEQY+YM  +KKTLD  G+C+LEMP+GTGKTV++ SL  +YQ H
Sbjct: 4   FNLDDVEIFFPYDYIYPEQYAYMKYLKKTLDSEGHCVLEMPTGTGKTVAIFSLITSYQYH 63

Query: 187 YPEHRKIVYCSRTMSEIEKALIELHKLMEFRAN 285
             +  K ++C+RT++E+EK+LIEL K++++R N
Sbjct: 64  KKDEGKFIFCTRTVAEMEKSLIELKKVIQYRIN 96



 Score =  108 bits (269), Expect = 4e-22
 Identities = 72/278 (25%), Positives = 134/278 (48%), Gaps = 59/278 (21%)
 Frame = +1

Query: 286 ELGEVEDFRGLGLTSRKNLCLHPTISKERKGVVVDEKCRRITNGQLKEK----------- 432
           E GE  +   +G+++R+ +C++  +  + +   +DE+CR++T   ++EK           
Sbjct: 169 EFGENSEILAIGISARRCMCINDKVLLKHEREKIDEECRKLTATFIREKKYINNKIDNEI 228

Query: 433 ----IEK----------GVPTED-----------------SLCSFHEKLYDLEPHNLVPP 519
               ++K           +  ED                  LC ++E       ++L+ P
Sbjct: 229 YHPNVDKISDFILRNRHHLDIEDYFDIYNSRNSLEEYDNIGLCGYYENYKKEFLYDLIKP 288

Query: 520 GVYSFDALIKYCKEEGT--------CPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVS-- 669
           GVY+ + L   CK            CPYF  +++I    +II +Y Y++DPK+++ +   
Sbjct: 289 GVYTIEDLKVLCKNYKNKENVNVPICPYFCAKKIIEISKVIILNYQYVIDPKVSKALFSW 348

Query: 670 -------RELSKDSIVIFDEAHNIDNVCIESLSLDLTDETLKKASRGANKLGEAIEDMKA 828
                     +K+ I++FDEAHNID+VC+E+LS+++    L KAS    KL + IE  K 
Sbjct: 349 KDMNKNVHLKNKNDIIVFDEAHNIDSVCLEALSVNIDRNILNKASMNITKLMKKIEQSKM 408

Query: 829 QDSEKLQNEYEQLVEGLRQAEIARDQELFMANPVLPQD 942
            + +KL+ E  +++E ++  +   +Q L + N V+  D
Sbjct: 409 LNEQKLKEECNKILEKIKLQKC--NQSLNVTNNVINID 444


>Q96HN4||Q96HN4 (TrEMBL: Homo sapiens (Human)) Similar to Xerodema
            pigmentosum D (Excision repair cross-complementing rodent
            repair deficiency, complementation group 2) (Xeroderma
            pigmentosum D).
          Length = 405

 Score =  377 bits (969), Expect = e-103
 Identities = 191/392 (48%), Positives = 271/392 (69%), Gaps = 2/392 (0%)
 Frame = +1

Query: 73   MCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQMHYP-EHRKIVYCSRTMSEIEKAL 249
            M ++K+TLD  G+ +LEMPSGTGKTVSLL+L +AYQ  YP E  K++YCSRT+ EIEK +
Sbjct: 1    MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 60

Query: 250  IELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPTISKERKGVVVDEKCRRITNGQLKE 429
             EL KL+ F   + GE   F GL L+SRKNLC+HP ++  R G  VD KC  +T   ++ 
Sbjct: 61   EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRA 120

Query: 430  KIEKGVPTEDSLCSFHEKLYDLEPHNL-VPPGVYSFDALIKYCKEEGTCPYFTVRRMIPF 606
            + +    T    C F+E+ +D     + +P G+Y+ D L    + +G CPYF  R  I  
Sbjct: 121  QYQHD--TSLPHCRFYEE-FDAHGREVPLPAGIYNLDDLKALGRRQGWCPYFLARYSILH 177

Query: 607  CNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAHNIDNVCIESLSLDLTDETLKKASR 786
             N+++YSYHYLLDPKIA+ VS+EL++ ++V+FDEAHNIDNVCI+S+S++LT  TL +   
Sbjct: 178  ANVVVYSYHYLLDPKIADLVSKELARKAVVVFDEAHNIDNVCIDSMSVNLTRRTLDRCQG 237

Query: 787  GANKLGEAIEDMKAQDSEKLQNEYEQLVEGLRQAEIARDQELFMANPVLPQDLLDEAIPG 966
                L + +  +K  D ++L++EY +LVEGLR+A  AR+ +  +ANPVLP ++L EA+PG
Sbjct: 238  NLETLQKTVLRIKETDEQRLRDEYRRLVEGLREASAARETDAHLANPVLPDEVLQEAVPG 297

Query: 967  NIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSFLQHLKELTYIERKPLRFCSERLSL 1146
            +IR  EHF+ FL+R +EY+K R++V HV+ E+P +FL  L +   I+RKPLRFC+ERL  
Sbjct: 298  SIRTAEHFLGFLRRLLEYVKWRLRVQHVVQESPPAFLSGLAQRVCIQRKPLRFCAERLRS 357

Query: 1147 LVRTLEVTEIDDFNALKDIATFATLVSTYDSG 1242
            L+ TLE+T++ DF+ L  +A FATLVSTY  G
Sbjct: 358  LLHTLEITDLADFSPLTLLANFATLVSTYAKG 389


>Q9W484|CG4078|Q9W484 (TrEMBL: Drosophila melanogaster (Fruit fly))
            CG4078 protein.
          Length = 985

 Score =  234 bits (597), Expect = 3e-60
 Identities = 194/763 (25%), Positives = 337/763 (44%), Gaps = 65/763 (8%)
 Frame = +1

Query: 13   IDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAY-QMHY 189
            I  +PV FP+   YP Q +YM  +   L  G N +LE P+GTGKT+SLL  ++A+ +   
Sbjct: 6    IAGIPVHFPFEP-YPVQRAYMEKVIHCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTRQ 64

Query: 190  PEHRK---------------------------------------IVYCSRTMSEIEKALI 252
             EH+K                                       ++Y SRT S++ +A+ 
Sbjct: 65   SEHQKQMVKMEKADFSGLGGGAPGGDLSELAKTMGRANNWGVPKVIYASRTHSQLTQAMR 124

Query: 253  ELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPTISKERKGVVVDEKCRRITNGQLKEK 432
            EL +             + R + L SR  LC+HP + +E+        C+          
Sbjct: 125  ELKRTA---------YANMRSVVLGSRDQLCIHPEVMREQGNSNKTNMCK---------- 165

Query: 433  IEKGVPTEDSLCSFHEKLYDLEPH-NLVPPGVYSFDALIKYCKEEGTCPYFTVRRMIPFC 609
                +      CSF  ++   + H +L  P +   + L+K  +    CPYF  R ++P  
Sbjct: 166  ----LRVHSKTCSFQMRVESRKDHPDLRGPTIMDIEDLVKVGQRLKICPYFASRELVPQA 221

Query: 610  NIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAHNIDNVCIESLSLDLTDETLKKASRG 789
            +I    Y+YLLDPK  +    EL  ++IVI DEAHNI+ +C ES S+ +    +  A   
Sbjct: 222  DITFMPYNYLLDPKARKANKIELG-NTIVILDEAHNIEKICEESASVQIKSSDVAMAIED 280

Query: 790  ANKLGEAIEDMKAQD------SEKLQNEYEQLVEGLRQAEIARDQELFMANPV----LPQ 939
               + +     ++QD       +   ++   L E L + E A D  + + N V     P 
Sbjct: 281  VTHIMQVFASGESQDMAGDEPKDFTLDDLTLLKEMLLELEKAIDA-IVVDNAVDGTTFPA 339

Query: 940  DLLDEAI-PGNIRKGE--HFIAFLKRFIEYLKTRMKVLHVISETPTSFLQHLKELTYIER 1110
             ++ E +   N   G     ++ L + ++YL    + + +      + L  L  + +  +
Sbjct: 340  SMMYELLGKANFTYGNVATIVSLLDKLVQYLLVASQQMSIRKGGTFTLLSDLLTIVFANK 399

Query: 1111 KPLR---FCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLILEPYETEGS 1281
            + +    + S ++ +LV   +        A +             +G   + +       
Sbjct: 400  EDVMSKVYASFKVHVLVEESKQGHGKQQGAKQQGGWLGKGTIAAATGLSKVAK------- 452

Query: 1282 TVPNPILHFTCLDASIAIKPVFD-RFSSVIITSGTISPLDMYPKMLKFETVIQESYAMTL 1458
                 I++F C +    ++ + + +  SVI+TSGT++PL      L             +
Sbjct: 453  -----IINFWCFNPGFGMEQLLNTQVRSVILTSGTLAPLKPLIAELAIPVAQHLENPHIV 507

Query: 1459 ARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLYM 1638
             +      I+  G D+  + S +  R++P  + + G  ++  A+I PDG++VFFPSY  +
Sbjct: 508  DQSQVYVKIIGTGPDRQQLISNYANRDNPKYISSLGQTILNVARIVPDGLLVFFPSYPML 567

Query: 1639 ESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYRKACSNGRGAVLLSVARGKVS 1818
               +  WQ+ G+  ++   K I +E     + +  +E + +A  + +GAV ++V RGKVS
Sbjct: 568  NKCVDAWQASGLWADISCKKPIFLEPRSKDQFTSTMEEFYQAIRDSKGAVFMAVCRGKVS 627

Query: 1819 EGIDFDHHYGRTVLMIGIPFQYTESR--ILKAR---LEFMRDHFQIKENDFLSFDAMRHA 1983
            EG+DF    GR V++ G+PF   +    ILK R       R++  +   ++ + DA R  
Sbjct: 628  EGLDFADRNGRAVIITGLPFPPLKDPKVILKRRYLEANRTRENQLLSGQEWYNLDATRAV 687

Query: 1984 AQCLGRVLRGKDDYGIMVLADRRF--ARKKNQLPKWIAQALND 2106
             Q +GRV+R ++DYG ++L D RF  A +  QL KWI   L D
Sbjct: 688  NQAIGRVIRHRNDYGAILLCDSRFKDASQVQQLSKWIRGHLGD 730


>Q93575|F25H2.13|Q93575 (TrEMBL: Caenorhabditis elegans) Hypothetical
            113.0 kDa helicase F25H2.13 in chromosome I.
          Length = 994

 Score =  203 bits (516), Expect = 9e-51
 Identities = 198/780 (25%), Positives = 340/780 (43%), Gaps = 68/780 (8%)
 Frame = +1

Query: 22   LPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQMHYPEHR 201
            L V FP+   Y  Q  +M ++   LD   +  LE P+GTGKT+SLL  T+A+     E +
Sbjct: 17   LSVKFPFEP-YECQRIFMKNVVDVLDRKLDAALESPTGTGKTLSLLCSTLAWVQRQKETK 75

Query: 202  K----------------------------IVYCSRTMSEIEKALIELHKLMEFRANELGE 297
                                         I Y SRT S++E+ + EL++          E
Sbjct: 76   PLDFATWQTSGAGGAEKTDEKLKSAYVPTIFYASRTHSQLEQVVHELNRT---------E 126

Query: 298  VEDFRGLGLTSRKNLCLHPTISKERKGVVVDEKCRRITNGQLKEKIEK-GVPTEDSLCSF 474
             +  +   L SR++ C++  + K ++       CR + + +      K    T D +  F
Sbjct: 127  YKWVKTTILGSREHFCINQKVKKIKESNRQAHVCRGLVSKRACHYYNKFDACTTDKMTEF 186

Query: 475  HEKLYDLEPHNLVPPGVYSFDALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKI 654
             +K   ++  + V  G            +   CPYF  R+      +I+  Y+Y++DPK+
Sbjct: 187  LDKGEAMDIEDFVKLGT-----------QNSLCPYFMSRQRSETAELILLPYNYIIDPKM 235

Query: 655  AERVSRELSKDSIVIFDEAHNIDNVCIESLSLDLTD-------ETLKKA-----SRGANK 798
              R   +L K+SIVIFDEAHN++++C  + S +LT        E LKK            
Sbjct: 236  RRRYKLDL-KNSIVIFDEAHNLESICESNASAELTSTSIALCIEELKKVLALLVDEEETA 294

Query: 799  LGEAIEDMKAQDSEKLQNEYEQLVEGLRQAEIARDQELFMANPVLPQDLLDEA------- 957
              EA  +  A  S K+    ++L+E LR  ++    E   +       L   +       
Sbjct: 295  RSEADAETGAFGSAKIDLT-KKLIENLRTEDLMTVLEKIFSLEEEMDKLFGSSQLKSVPP 353

Query: 958  IPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSFLQHLKELTYIERKPLRFCSER 1137
            + G    GE  +  L +      +  +++ V+ +  +  L   +E+   E+       E+
Sbjct: 354  LSGKASDGEILLETLAKAGFDANSVERLVDVLRDAISYLLSKNEEVALTEKGD---GMEK 410

Query: 1138 LSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLILEPYETEGSTVPNPILHFTCL 1317
            ++  + ++  T   D  A     T   +            + Y  +        + + C 
Sbjct: 411  VADFLLSIYSTHAQDVAAAVGEETVKLVDRVDPKTVARNCKLYIQKDKDNEKLTIKYFCF 470

Query: 1318 DASIAIKPVFDR-FSSVIITSGTISPLDM--YPKMLKFETVIQESYAMTLARRSFLPMIV 1488
             ASI+++ +  R   +V++ SGT+SP+    Y   L F  +++  +A  L +   L  IV
Sbjct: 471  QASISMRMLKMRGVRNVLLASGTLSPIQAFTYNMGLNFGAILENEHA--LKQVPVLTSIV 528

Query: 1489 TKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLYMESIISMWQ-- 1662
            T+G  +  ++  F+ R +   V      L+   ++ P G+++FF SY  M+ +++ W+  
Sbjct: 529  TRGK-RGGLAGSFQNRKNLDYVTGVAEALLRVMEVIPQGILIFFSSYSQMDELVATWKTT 587

Query: 1663 --SMGVLDEVW----KHKLILVETPDAQETSLALETYRKACSNGRGAVLLSVARGKVSEG 1824
              S    +  W    K K ++VE    +E +     Y +  S   GA LL+V RGKVSEG
Sbjct: 588  KWSSNSNESFWEKMEKTKRVVVEPRAKEELAAIRLRYTQGVSEQHGAALLAVCRGKVSEG 647

Query: 1825 IDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQIKE--------NDFLSFDAMRH 1980
            IDF     R V++IGIP+       +  +  ++ D    K+         D+   +A R 
Sbjct: 648  IDFCDAESRAVIIIGIPYPPIHDERVVLKKMYLDDLMGRKDTKSERQSSQDWYQMEAFRA 707

Query: 1981 AAQCLGRVLRGKDDYGIMVLADRRFARKKNQL-PKWIAQALNDSDTNLSTDMALATAKKF 2157
              Q +GRVLR KDD+G +VL D R+A  K ++ PKW+   ++ SDT+     AL T++ F
Sbjct: 708  VNQAIGRVLRHKDDFGTVVLMDTRYASAKPEMFPKWLRNTISRSDTD---GCALKTSRFF 764


>Q9CA97|F19K16.9|Q9CA97 (TrEMBL: Arabidopsis thaliana (Mouse-ear
            cress)) Hypothetical protein.
          Length = 959

 Score =  194 bits (494), Expect = 3e-48
 Identities = 181/750 (24%), Positives = 330/750 (44%), Gaps = 56/750 (7%)
 Frame = +1

Query: 7    FFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQMH 186
            + I  + V FP+   Y  Q  YM  + ++L    + +LE P+GTGKT+ LL  T+A++  
Sbjct: 49   YSIRGINVEFPF-EAYQSQIIYMDRVIESLQNKCHALLESPTGTGKTLCLLCATLAWRKS 107

Query: 187  YP-----EHRK--------------------------IVYCSRTMSEIEKALIELHKLME 273
                   + RK                          IVY SRT S++ + + EL K   
Sbjct: 108  LGSFSTRKDRKNSAIPWSDSDEPLSQSGGGGGGAFPTIVYASRTHSQLRQVIKEL-KRSS 166

Query: 274  FRANELGEVEDFRGLGLTSRKNLCLHPTISKERKGVVVDEKCRRITNGQLKEKIEKGVPT 453
            +R          + + L SR+ LC++  ++  R G  +   C+ +   + K +       
Sbjct: 167  YRP---------KMVVLGSREQLCVNEEVNSLR-GKALTNACQYLCKKRGKRQ------- 209

Query: 454  EDSLCSFHEKLYDLEPHNL-VPPGVYSFDALIKYCKEEGTCPYFTVRRMIPFCNIIIYSY 630
                C+   +L D   HN  +       + L+   K+ G CPY+  R +    +II   Y
Sbjct: 210  ----CNHFNRLPDYLKHNPHIGDEPVDIEDLVNIGKDSGPCPYYITRELHKDVDIIFAPY 265

Query: 631  HYLLDPKIAERVSRELSKDSIVIFDEAHNIDNVCIESLSLDLTDETLKKASRGANKLGE- 807
            +YL+     + +    + +S++IFDEAHN++++C +S S DL    L      A +  + 
Sbjct: 266  NYLISNGYRKFLKVNWT-NSVLIFDEAHNLESLCADSASFDLPSVLLSACISEAQECVQL 324

Query: 808  AIEDMKAQDSEKLQNEYEQLVEGLRQAEIARDQELFMANPVLPQDLLDEAIPGNIRKGEH 987
            A     + +   +  E   +++GL    + + QEL    P+  +D       G  + G +
Sbjct: 325  AAARRDSLNDVSINPENFAILKGL----LLKLQELISKVPIPKRD------EGFTKPGPY 374

Query: 988  FIAFLKRFIEYLKTRMKVLHVISETPTSFLQHLKELTYIER-KPLRFCSERLSLLVRTLE 1164
                LK      +T  K++  + E    FL+  K+ T       L   ++ L L+ R   
Sbjct: 375  IYEMLKSLNITHETAPKLIGTVEEAAV-FLEEEKQRTATNAGSKLEIIADMLKLIFRENG 433

Query: 1165 VTEIDDFNALKDIATFATLVSTYDSGFQLILEPYETEGSTVPNPILHFTCLDASIAIKPV 1344
                D +  L+  +T                     +G    +  L + C    I +  +
Sbjct: 434  SNHADVYRELEQNSTDVM------------------KGKV--SRTLSWWCFSPGITMLDI 473

Query: 1345 FDR-FSSVIITSGTISPLDMYPKMLKFETVIQESYAMTLARRSFLPMIVTKGSDQVSISS 1521
              +   S+I+TSGT+SP+D   + LK +  I+      ++       +V+ G     ++S
Sbjct: 474  AQKGVGSIILTSGTLSPMDSLAQELKLDFPIRLENPHVISSNQLWAGVVSTGPSGYVLNS 533

Query: 1522 RFEIRNDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLYMESIISMWQ------SMGVLDE 1683
             +  R+ P   +  G+ ++ F+++ P+G+++FFPSY  M+S I+ W+      SM V + 
Sbjct: 534  SYRNRDVPEYKQELGNAIVNFSRVVPEGLLIFFPSYYLMDSCITFWKNGCYRNSMTVWER 593

Query: 1684 VWKHKLILVETPDAQETSLALETYRKACSN--GRGAVLLSVARGKVSEGIDFDHHYGRTV 1857
            + K K  ++E  D+     A+  + +   +    G V  +V RGKVSEG+DF    GR V
Sbjct: 594  ICKLKKPVIEPKDSSLFPAAMRDFSEKLQDRATSGVVFFAVCRGKVSEGLDFADGAGRAV 653

Query: 1858 LMIGIPFQYTESRILKARLEFMRDHFQIKE-----------NDFLSFDAMRHAAQCLGRV 2004
            ++ G+P+       +K + EF+ +  Q+ +           + + S +A R   Q +GRV
Sbjct: 654  VITGLPYARVTDPRVKLKREFLDEQSQLADVKLPRSTLLSGSMWYSQEAARAVNQAIGRV 713

Query: 2005 LRGKDDYGIMVLADRRFAR--KKNQLPKWI 2088
            +R + DYG ++  D RF +  +++++  WI
Sbjct: 714  IRHRHDYGAIIFCDDRFEQPSQQSKISLWI 743


>Q8IM12|PF14_0081|Q8IM12 (TrEMBL: Plasmodium falciparum (isolate 3D7))
            DNA repair helicase, putative.
          Length = 1160

 Score =  194 bits (493), Expect = 4e-48
 Identities = 197/832 (23%), Positives = 352/832 (42%), Gaps = 137/832 (16%)
 Frame = +1

Query: 4    KFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQM 183
            ++ I+D+ V FPY  +Y  QY+YM  +   L    N ILE P+GTGKT+ LL  +++Y +
Sbjct: 21   RYTINDIEVYFPY-ELYDCQYNYMLSVLSALKKRENAILESPTGTGKTLCLLCASISYVV 79

Query: 184  -------HYPEH------------------------------RKIVYCSRTMSEIEKALI 252
                   H+ E+                               KI+Y SRT S++++ + 
Sbjct: 80   DILEKKGHFNENINISENNKNISLEFGKSNESVPKKVVANEFPKIIYASRTHSQLKQVIK 139

Query: 253  ELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPTISKERKGVVVDEKCRRIT-NGQLKE 429
            EL  +   + NE  ++       L SR  LC+H  I+   KG +++  C+R   NG+   
Sbjct: 140  ELKNVYFIKNNEKYKLLTTI---LGSRDQLCVH-NINYNYKGTLLNNMCKRTRKNGE--- 192

Query: 430  KIEKGVPTEDSLCSFH---EKLYDLEPHNLVPPGVYSFDALIK---YCKEEGTCPYFTVR 591
                        C +H   + LY L+     P  V +   + K     +    CP++  R
Sbjct: 193  ------------CIYHNGLKYLYKLKHLFTTPMDVETLSEIGKGNSVGQNIHFCPFYATR 240

Query: 592  RMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAHNIDNVCIESLSLDLTDETL 771
             +   C+II+  Y+YL +    + +   L ++SI+I DE HNI+NV  E++S  L D  L
Sbjct: 241  EIQNECHIILLPYNYLFEESTRKILKLNL-ENSIIIIDEGHNIENVAEEAVSFKLKDTDL 299

Query: 772  K---KASRGANKLGEAIEDMKAQDSEK--------LQNEYEQLVEGLRQAEIARDQ---- 906
                +A +    + E + ++  +  +K        L      L+  L   ++ +++    
Sbjct: 300  NLFLEALKATLTILEKVNEIDKEIKDKINIDELFILNRSINALITWLHNLQLEKNEKKKI 359

Query: 907  -------------ELFMANPV-LPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVL 1044
                         E+F  N + + +D  D     N+      I  L ++    K     +
Sbjct: 360  KEKHKIYQGKQIFEIFEKNSINITKDNFDNF--NNLLTA--MIELLNKYTNDFKLSQMDV 415

Query: 1045 HVISETPTSFLQHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALK--------- 1197
              I+    S     K    +    ++ C E   L +   ++   D FN            
Sbjct: 416  KNINRFIASIDHVKKAFGILFSDIVKNCIEYFHLYINEEKINNTDTFNNYNNNYGGSSNI 475

Query: 1198 DIATFATLVSTYDSGFQLILEP---------------YETEGS----------TVPNPI- 1299
            D   F      YD   + I +                Y+T GS          T  N   
Sbjct: 476  DSMNFINSGKNYDGMNRFIKKKIAYDNNVSNNNNTNYYDTFGSNNIYNNNTTNTFNNNTV 535

Query: 1300 ---LHFTCLDASIAIKPVF-DRFSSVIITSGTISPLDMYPKMLK-----FETVIQESYAM 1452
               +   C  A+ ++  +  ++ +S+I+TSGT+SP++ + K L      F+ +++  +  
Sbjct: 536  CKNISLLCFSATASLCGIIKEKINSIIVTSGTLSPIEPFSKQLSGNYFSFKHILENDHV- 594

Query: 1453 TLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVFFPSYL 1632
             +         +T  ++Q+ +S+ +E R + + +R+ G+ + +     P G+++FF SY 
Sbjct: 595  -IKSHQLFVGCMTHYNNQILLST-YENRANENYIRSLGNCIFDIIVCIPYGVLIFFSSYS 652

Query: 1633 YMESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETYRKACSNGR-GAVLLSVARG 1809
             M   ++ W+ M + D++  +K I VE   A +    L+ Y       R GA+L+ V RG
Sbjct: 653  SMTETVNSWKKMKIYDKINTYKTIFVEPNKATDLKDILDQYEILIKKKRKGAILMGVCRG 712

Query: 1810 KVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQI---------------- 1941
            K+SEGIDF     R V++ G+P+       +  + EF+ D+F+                 
Sbjct: 713  KISEGIDFKDDCCRAVIICGLPYGNVYDSKIIFKKEFL-DNFKYQKTDERPNSSNITSNI 771

Query: 1942 -KENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRRFARKK--NQLPKWI 2088
             K N + + +AMR   Q +GRV+R K+DYG +   D RF+  +   ++ KW+
Sbjct: 772  SKGNKWYNEEAMRSINQSIGRVIRHKNDYGAIFFLDSRFSNNQRIKEISKWV 823


>Q9NZ71|NHL|NHL_HUMAN (SP: Homo sapiens (Human)) Helicase-like protein
            NHL.
          Length = 1400

 Score =  186 bits (472), Expect = 1e-45
 Identities = 186/780 (23%), Positives = 317/780 (40%), Gaps = 85/780 (10%)
 Frame = +1

Query: 4    KFFIDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQM 183
            K  ++ + V FP+ + Y  Q  YM  + + L    N ILE P+GTGKT+ LL  T+A++ 
Sbjct: 3    KIVLNGVTVDFPF-QPYKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAWRE 61

Query: 184  H----------------------------------------YPEHRKIVYCSRTMSEIEK 243
            H                                        Y +  KI+Y SRT S++ +
Sbjct: 62   HLRDGISARKIAERAQGELFPDRALSSWGNAAAAAGDPIACYTDIPKIIYASRTHSQLTQ 121

Query: 244  ALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPTISKERKGVVVDEKCRRITNGQL 423
             + EL     +R          +   L SR+ LC+HP + K+    +    CR+      
Sbjct: 122  VINELRNT-SYRP---------KVCVLGSREQLCIHPEVKKQESNHLQIHLCRK------ 165

Query: 424  KEKIEKGVPTEDSLCSFHEKLYDLEPHNLVPPGVYSFDALIKYCKEEGTCPYFTVRRMIP 603
                          C F+  + +      +   +   + L+K   +   CPY+  R +  
Sbjct: 166  --------KVASRSCHFYNNVEEKSLEQELASPILDIEDLVKSGSKHRVCPYYLSRNLKQ 217

Query: 604  FCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAHNIDNVCIESLSLDLT-------- 759
              +II   Y+YLLD K     + +L K ++VIFDEAHN++ +C ES S DLT        
Sbjct: 218  QADIIFMPYNYLLDAKSRRAHNIDL-KGTVVIFDEAHNVEKMCEESASFDLTPHDLASGL 276

Query: 760  ---DETLKKASRGANKLGEAIED-----------MKAQDSEKLQNEYEQLVEGLRQAEIA 897
               D+ L++ ++ A + GE   +           M+ +D  KL+    +L   +   E+ 
Sbjct: 277  DVIDQVLEEQTKAAQQ-GEPHPEFSADSPSPGLNMELEDIAKLKMILLRLEGAIDAVELP 335

Query: 898  RDQELFMANPVLPQDLLDEAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSFL 1077
             D            +L  EA      KG   +  L + I++L  R  V      T T+ L
Sbjct: 336  GDDSGVTKPGSYIFELFAEAQITFQTKG-CILDSLDQIIQHLAGRAGVF-----TNTAGL 389

Query: 1078 QHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNALKDIATFATLVSTY------DS 1239
            Q L ++  I                    V  +D              + +Y      D+
Sbjct: 390  QKLADIIQI--------------------VFSVDPSEGSPGSPAGLGALQSYKVHIHPDA 429

Query: 1240 GFQLILE---PYETEGSTVPNPILHFTCLDASIAIKPVFDR-FSSVIITSGTISPLDMYP 1407
            G +   +    + T  +     +L + C     ++  +  +   S+I+TSGT++P+  + 
Sbjct: 430  GHRRTAQRSDAWSTTAARKRGKVLSYWCFSPGHSMHELVRQGVRSLILTSGTLAPVSSFA 489

Query: 1408 KMLKFETVIQESYAMTLARRSFLPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFA 1587
              ++    +       + +      +V +G D   +SS F+ R     + + G  L   A
Sbjct: 490  LEMQIPFPVCLENPHIIDKHQIWVGVVPRGPDGAQLSSAFDRRFSEECLSSLGKALGNIA 549

Query: 1588 KITPDGMVVFFPSYLYMESIISMWQSMGVLDEVWKHKLILVETPDAQETSLALETY--RK 1761
            ++ P G+++FFPSY  ME  +  W++  +  ++   K + VE       S  +  Y  R 
Sbjct: 550  RVVPYGLLIFFPSYPVMEKSLEFWRARDLARKMEALKPLFVEPRSKGSFSETISAYYARV 609

Query: 1762 ACSNGRGAVLLSVARGKVSEGIDFDHHYGRTVLMIGIPFQYTESRILKARLEFMRDHFQ- 1938
            A     GA  L+V RGK SEG+DF    GR V++ G+P+       +  +++F+ D  + 
Sbjct: 610  AAPGSTGATFLAVCRGKASEGLDFSDTNGRGVIVTGLPYPPRMDPRVVLKMQFL-DEMKG 668

Query: 1939 --------IKENDFLSFDAMRHAAQCLGRVLRGKDDYGIMVLADRR--FARKKNQLPKWI 2088
                    +   ++    A R   Q +GRV+R + DYG + L D R  FA  + QLP W+
Sbjct: 669  QGGAGGQFLSGQEWYRQQASRAVNQAIGRVIRHRQDYGAVFLCDHRFAFADARAQLPSWV 728


>Q94JB5|P0710A02.18|Q94JB5 (TrEMBL: Oryza sativa (Rice)) P0710A02.18
            protein.
          Length = 1164

 Score =  174 bits (441), Expect = 4e-42
 Identities = 177/759 (23%), Positives = 315/759 (41%), Gaps = 67/759 (8%)
 Frame = +1

Query: 13   IDDLPVLFPYPRIYPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQMHYP 192
            I  + V FPY   Y  Q +YM  + ++L  G N +LE P+GTGKT+ LL   +A++  + 
Sbjct: 191  IRGVDVDFPYDA-YDCQITYMDRVLESLQQGKNALLESPTGTGKTLCLLCSALAWRRTFG 249

Query: 193  EHRK--------------------------------------------IVYCSRTMSEIE 240
            E  +                                            I+Y SRT S++ 
Sbjct: 250  EFLRGGGGGGGGGGGGGGGGSQQPPYGSQPSGSQHSGGSASQSSRYPVIIYASRTHSQLR 309

Query: 241  KALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPTISKERKGVVVDEKCRRITNGQ 420
            + + EL K   +R          +   L SR+ +C+H  +SK R G   +  C  +   +
Sbjct: 310  QVIKEL-KATSYRP---------KMAVLGSREQMCIHEEVSKLR-GRQQNNACHYLCKKR 358

Query: 421  LKEKIEKGVPTEDSLCSFHEKLYDLEPHNL-VPPGVYSFDALIKYCKEEGTCPYFTVRRM 597
                           C  H  + +   +N  +       + L+   + +G CPY+  R +
Sbjct: 359  W--------------CRHHNSVAEFMRNNSELGSEACDIEDLVNIGRTKGPCPYYISREL 404

Query: 598  IPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAHNIDNVCIESLSLDLTDETLKK 777
                +I+   Y+YL+DP     ++     ++++IFDEAHN++++C ++ S DL    L  
Sbjct: 405  SKSVDILFAPYNYLIDPGNRRSLNGIPWDNAVLIFDEAHNLESICADAASFDLLPNNLSS 464

Query: 778  ASRGANKLGEAIEDMKAQDSEK-LQNEYEQLVEGLRQAEIARDQELFMA-NPVLPQDLLD 951
                   + EA E ++   +++  +N  ++  +    A +   + L MA    + + ++D
Sbjct: 465  C------IAEAQECIQLCSAKRTFENSADKQFDPENYAIL---KALLMALEKKISEVVID 515

Query: 952  EAIPGNIRKGEHFIAFLKRFIEYLKTRMKVLHVISETPTSFLQHLKELTYIERKPLRFCS 1131
                G+ + G +   FL       +T  K++  I     S L  L+E    E  P     
Sbjct: 516  SKELGHTKPGNYIYEFLSELNITSETSKKLIDTIDGA--SLL--LEEGNSAETGPGMKAK 571

Query: 1132 ERLSLLVRTLEVTEIDDFNALKDIATFATLVSTYDSGFQLILEPYETEGSTVP-----NP 1296
              +  L    ++ +I      +  A +             + E  +  G  +      + 
Sbjct: 572  ATVCRLETIRDILDIIFRGGGQSHAKYYRFH---------VNECQQNSGDALKVLGKVSR 622

Query: 1297 ILHFTCLDASIAIKPVFDR-FSSVIITSGTISPLDMYPKMLKFETVIQESYAMTLARRSF 1473
             L + C +  +A++        S+I+TSGT+SPLD     L  E  ++      +A    
Sbjct: 623  TLSWWCFNPGLAMEEFLKLGVRSIILTSGTLSPLDSLALELNLEFPVRLENPHVIASDQI 682

Query: 1474 LPMIVTKGSDQVSISSRFEIRNDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLYMESIIS 1653
               +V  G     ++S +  R      +  G  ++ FA+I PDG++VFFPSY  M+  I+
Sbjct: 683  WVGVVPVGPSGHPLNSSYRTRETLKYKQELGITIVNFARIVPDGLLVFFPSYSMMDKCIN 742

Query: 1654 MWQSMG---------VLDEVWKHKLILVETPDAQETSLALETY--RKACSNGRGAVLLSV 1800
             W+            +   + KHK  ++E   +     A+E Y  +   S+  GA+  +V
Sbjct: 743  CWKDRNHENSSDEHTIWQRICKHKQPVIEPRQSSNFPNAIEDYAAKLRDSSTTGAIFFAV 802

Query: 1801 ARGKVSEGIDFDHHYGRTVLMIGIPFQY-TESRILKARLEFMRDHFQIKENDFLSFDAMR 1977
             RGKVSEG+DF    GR V++ G+PF   T+ + L     +++              A R
Sbjct: 803  CRGKVSEGLDFADRAGRAVIVTGMPFATPTDPKALTGEEWYVQ-------------QAAR 849

Query: 1978 HAAQCLGRVLRGKDDYGIMVLADRRFA--RKKNQLPKWI 2088
               Q +GRV+R + DYG ++  D RF     ++Q+  W+
Sbjct: 850  AVNQAVGRVIRHRHDYGAIIYCDERFVWQNYQSQMSYWL 888


>Q86VQ4||Q86VQ4 (TrEMBL: Homo sapiens (Human)) DDX11 protein.
          Length = 880

 Score =  171 bits (434), Expect = 3e-41
 Identities = 174/704 (24%), Positives = 305/704 (43%), Gaps = 50/704 (7%)
 Frame = +1

Query: 202  KIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPTISKERKGV 381
            KI YCSRT S++ + + E+ K      +  G+  D R + L SR+NLC++  +       
Sbjct: 202  KIYYCSRTHSQLAQFVHEVKK------SPFGK--DVRLVSLGSRQNLCVNEDVKSLGSVQ 253

Query: 382  VVDEKC-------RRITNGQLKEKIEKGVPTEDSLCSF--HEKLYDLEPHNLVPPGVYSF 534
            +++++C            G  +EK ++    + + C F  HE++  L    L    V   
Sbjct: 254  LINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAE--VKDM 311

Query: 535  DALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAH 714
            + L+   KE   CPY+  R  IP   +++  Y  LL     +     L +D +VI DEAH
Sbjct: 312  EQLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAH 370

Query: 715  NIDNVCIESLSLDLTDETLKKAS----RGANKLGEAIEDMKAQDSEKLQNEYEQLVEGL- 879
            N+ +      S++++   L +A     +   + G+ ++       +++    E+ V  L 
Sbjct: 371  NLIDTITGMHSVEVSGSQLCQAHSQLLQYVERYGKRLKAKNLMYLKQILYLLEKFVAVLG 430

Query: 880  --------RQAEIARDQELFMANPVLPQDLLDEAIPGNIRKGEHFI--AFLKRFIEYLKT 1029
                     Q+      EL   N  L Q  +D     N+ K + +   + + R +     
Sbjct: 431  GNIKQNPNTQSLSQTGTELKTINDFLFQSQIDNI---NLFKVQRYCEKSMISRKLFGFTE 487

Query: 1030 RMKVLHVISETPT-----SFLQHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNAL 1194
            R   +    E P       FLQ L+  T          +E L+      + + +   + L
Sbjct: 488  RYGAVFSSREQPKLAGFQQFLQSLQPRT----------TEALAAPADESQASTLRPASPL 537

Query: 1195 KDIATFATLVSTYDSGFQLILEPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIIT 1374
              I  F   ++T +   ++IL     +GS +    L F  L+ ++    V     +V+I 
Sbjct: 538  MHIQGFLAALTTANQDGRVILS---RQGS-LSQSTLKFLLLNPAVHFAQVVKECRAVVIA 593

Query: 1375 SGTISPLDMYPKML------KFETVIQESYAMTLARRSFLPMIVTKGSDQVSISSRFEIR 1536
             GT+ P+  + + L      + E V++ S    +   + LP+++  G     +   F+ R
Sbjct: 594  GGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKR 653

Query: 1537 NDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLYMESIISMWQSMGVLDEVWKHKLILVET 1716
              P ++   G +L     + P G+V FFPSY Y+  + + W+  G+L  +   K I  E 
Sbjct: 654  ELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEP 713

Query: 1717 PDAQETSLALETYRK---ACSNGR----GAVLLSVARGKVSEGIDFDHHYGRTVLMIGIP 1875
              A +    L  Y +   AC   R    GA+LLSV  GK+SEGI+F  + GR V+M+G+P
Sbjct: 714  KSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDNLGRCVVMVGMP 773

Query: 1876 FQYTESRILKARLEFM-----RDHFQIKENDFLSFD-AMRHAAQCLGRVLRGKDDYGIMV 2037
            F    S  L+ ++ ++     R   Q      L  +  M+   Q +GR +R + D+  +V
Sbjct: 774  FPNIRSAELQEKMAYLDQTLPRAPGQAPPGKALVENLCMKAVNQSIGRAIRHQKDFASVV 833

Query: 2038 LADRRFARKK--NQLPKWIAQALNDSDTNLSTDMALATAKKFLR 2163
            L D+R+AR     +LP WI   +   +   +   A+A  +KF R
Sbjct: 834  LLDQRYARPPVLAKLPAWIRARV---EVKATFGPAIAAVQKFHR 874


>Q92770|CHLR1|Q92770 (TrEMBL: Homo sapiens (Human)) Helicase.
          Length = 906

 Score =  171 bits (434), Expect = 3e-41
 Identities = 174/704 (24%), Positives = 305/704 (43%), Gaps = 50/704 (7%)
 Frame = +1

Query: 202  KIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPTISKERKGV 381
            KI YCSRT S++ + + E+ K      +  G+  D R + L SR+NLC++  +       
Sbjct: 228  KIYYCSRTHSQLAQFVHEVKK------SPFGK--DVRLVSLGSRQNLCVNEDVKSLGSVQ 279

Query: 382  VVDEKC-------RRITNGQLKEKIEKGVPTEDSLCSF--HEKLYDLEPHNLVPPGVYSF 534
            +++++C            G  +EK ++    + + C F  HE++  L    L    V   
Sbjct: 280  LINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAE--VKDM 337

Query: 535  DALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAH 714
            + L+   KE   CPY+  R  IP   +++  Y  LL     +     L +D +VI DEAH
Sbjct: 338  EQLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAH 396

Query: 715  NIDNVCIESLSLDLTDETLKKAS----RGANKLGEAIEDMKAQDSEKLQNEYEQLVEGL- 879
            N+ +      S++++   L +A     +   + G+ ++       +++    E+ V  L 
Sbjct: 397  NLIDTITGMHSVEVSGSQLCQAHSQLLQYVERYGKRLKAKNLMYLKQILYLLEKFVAVLG 456

Query: 880  --------RQAEIARDQELFMANPVLPQDLLDEAIPGNIRKGEHFI--AFLKRFIEYLKT 1029
                     Q+      EL   N  L Q  +D     N+ K + +   + + R +     
Sbjct: 457  GNIKQNPNTQSLSQTGTELKTINDFLFQSQIDNI---NLFKVQRYCEKSMISRKLFGFTE 513

Query: 1030 RMKVLHVISETPT-----SFLQHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNAL 1194
            R   +    E P       FLQ L+  T          +E L+      + + +   + L
Sbjct: 514  RYGAVFSSREQPKLAGFQQFLQSLQPRT----------TEALAAPADESQASTLRPASPL 563

Query: 1195 KDIATFATLVSTYDSGFQLILEPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIIT 1374
              I  F   ++T +   ++IL     +GS +    L F  L+ ++    V     +V+I 
Sbjct: 564  MHIEGFLAALTTANQDGRVILS---RQGS-LSQSTLKFLLLNPAVHFAQVVKECRAVVIA 619

Query: 1375 SGTISPLDMYPKML------KFETVIQESYAMTLARRSFLPMIVTKGSDQVSISSRFEIR 1536
             GT+ P+  + + L      + E V++ S    +   + LP+++  G     +   F+ R
Sbjct: 620  GGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKR 679

Query: 1537 NDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLYMESIISMWQSMGVLDEVWKHKLILVET 1716
              P ++   G +L     + P G+V FFPSY Y+  + + W+  G+L  +   K I  E 
Sbjct: 680  ELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEP 739

Query: 1717 PDAQETSLALETYRK---ACSNGR----GAVLLSVARGKVSEGIDFDHHYGRTVLMIGIP 1875
              A +    L  Y +   AC   R    GA+LLSV  GK+SEGI+F  + GR V+M+G+P
Sbjct: 740  KSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDNLGRCVVMVGMP 799

Query: 1876 FQYTESRILKARLEFM-----RDHFQIKENDFLSFD-AMRHAAQCLGRVLRGKDDYGIMV 2037
            F    S  L+ ++ ++     R   Q      L  +  M+   Q +GR +R + D+  +V
Sbjct: 800  FPNIRSAELQEKMAYLDQTLPRAPGQAPPGKALVENLCMKAVNQSIGRAIRHQKDFASVV 859

Query: 2038 LADRRFARKK--NQLPKWIAQALNDSDTNLSTDMALATAKKFLR 2163
            L D+R+AR     +LP WI   +   +   +   A+A  +KF R
Sbjct: 860  LLDQRYARPPVLAKLPAWIRARV---EVKATFGPAIAAVQKFHR 900



 Score = 35.8 bits (81), Expect = 2.4
 Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +1

Query: 34  FPYPRI-YPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQMHYPEHRK 204
           FP+P   Y  Q  +M ++ + L+ G   I E P+GTGK++SL+   +++   + + ++
Sbjct: 13  FPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRDFEQKKR 70


>Q92998|CHLR1|Q92998 (TrEMBL: Homo sapiens (Human)) CHL1 potential
            helicase.
          Length = 906

 Score =  171 bits (434), Expect = 3e-41
 Identities = 174/704 (24%), Positives = 305/704 (43%), Gaps = 50/704 (7%)
 Frame = +1

Query: 202  KIVYCSRTMSEIEKALIELHKLMEFRANELGEVEDFRGLGLTSRKNLCLHPTISKERKGV 381
            KI YCSRT S++ + + E+ K      +  G+  D R + L SR+NLC++  +       
Sbjct: 228  KIYYCSRTHSQLAQFVHEVKK------SPFGK--DVRLVSLGSRQNLCVNEDVKSLGSVQ 279

Query: 382  VVDEKC-------RRITNGQLKEKIEKGVPTEDSLCSF--HEKLYDLEPHNLVPPGVYSF 534
            +++++C            G  +EK ++    + + C F  HE++  L    L    V   
Sbjct: 280  LINDRCVDMQRSRHEKKKGAEEEKPKRRRQEKQAACPFYNHEQMGLLRDEALAE--VKDM 337

Query: 535  DALIKYCKEEGTCPYFTVRRMIPFCNIIIYSYHYLLDPKIAERVSRELSKDSIVIFDEAH 714
            + L+   KE   CPY+  R  IP   +++  Y  LL     +     L +D +VI DEAH
Sbjct: 338  EQLLALGKEARACPYYGSRLAIPAAQLVVLPYQMLLHAATRQAAGIRL-QDQVVIIDEAH 396

Query: 715  NIDNVCIESLSLDLTDETLKKAS----RGANKLGEAIEDMKAQDSEKLQNEYEQLVEGL- 879
            N+ +      S++++   L +A     +   + G+ ++       +++    E+ V  L 
Sbjct: 397  NLIDTITGMHSVEVSGSQLCQAHSQLLQYVERYGKRLKAKNLMYLKQILYLLEKFVAVLG 456

Query: 880  --------RQAEIARDQELFMANPVLPQDLLDEAIPGNIRKGEHFI--AFLKRFIEYLKT 1029
                     Q+      EL   N  L Q  +D     N+ K + +   + + R +     
Sbjct: 457  GNIKQNPNTQSLSQTGTELKTINDFLFQSQIDNI---NLFKVQRYCEKSMISRKLFGFTE 513

Query: 1030 RMKVLHVISETPT-----SFLQHLKELTYIERKPLRFCSERLSLLVRTLEVTEIDDFNAL 1194
            R   +    E P       FLQ L+  T          +E L+      + + +   + L
Sbjct: 514  RYGAVFSSREQPKLAGFQQFLQSLQPRT----------TEALAAPADESQASTLRPASPL 563

Query: 1195 KDIATFATLVSTYDSGFQLILEPYETEGSTVPNPILHFTCLDASIAIKPVFDRFSSVIIT 1374
              I  F   ++T +   ++IL     +GS +    L F  L+ ++    V     +V+I 
Sbjct: 564  MHIEGFLAALTTANQDGRVILS---RQGS-LSQSTLKFLLLNPAVHFAQVVKECRAVVIA 619

Query: 1375 SGTISPLDMYPKML------KFETVIQESYAMTLARRSFLPMIVTKGSDQVSISSRFEIR 1536
             GT+ P+  + + L      + E V++ S    +   + LP+++  G     +   F+ R
Sbjct: 620  GGTMQPVSDFRQQLLACAGVEAERVVEFSCGHVIPPDNILPLVICSGISNQPLEFTFQKR 679

Query: 1537 NDPSVVRNYGSLLIEFAKITPDGMVVFFPSYLYMESIISMWQSMGVLDEVWKHKLILVET 1716
              P ++   G +L     + P G+V FFPSY Y+  + + W+  G+L  +   K I  E 
Sbjct: 680  ELPQMMDEVGRILCNLCGVVPGGVVCFFPSYEYLRQVHAHWEKGGLLGRLAARKKIFQEP 739

Query: 1717 PDAQETSLALETYRK---ACSNGR----GAVLLSVARGKVSEGIDFDHHYGRTVLMIGIP 1875
              A +    L  Y +   AC   R    GA+LLSV  GK+SEGI+F  + GR V+M+G+P
Sbjct: 740  KSAHQVEQVLLAYSRCIQACGQERGQVTGALLLSVVGGKMSEGINFSDNLGRCVVMVGMP 799

Query: 1876 FQYTESRILKARLEFM-----RDHFQIKENDFLSFD-AMRHAAQCLGRVLRGKDDYGIMV 2037
            F    S  L+ ++ ++     R   Q      L  +  M+   Q +GR +R + D+  +V
Sbjct: 800  FPNIRSAELQEKMAYLDQTLPRAPGQAPPGKALVENLCMKAVNQSIGRAIRHQKDFASIV 859

Query: 2038 LADRRFARKK--NQLPKWIAQALNDSDTNLSTDMALATAKKFLR 2163
            L D+R+AR     +LP WI   +   +   +   A+A  +KF R
Sbjct: 860  LLDQRYARPPVLAKLPAWIRARV---EVKATFGPAIAAVQKFHR 900



 Score = 35.8 bits (81), Expect = 2.4
 Identities = 17/58 (29%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
 Frame = +1

Query: 34  FPYPRI-YPEQYSYMCDIKKTLDVGGNCILEMPSGTGKTVSLLSLTVAYQMHYPEHRK 204
           FP+P   Y  Q  +M ++ + L+ G   I E P+GTGK++SL+   +++   + + ++
Sbjct: 13  FPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLICGALSWLRDFEQKKR 70


  Database: sptrembl
    Posted date:  Oct 14, 2003  6:47 PM
  Number of letters in database: 339,323,595
  Number of sequences in database:  1,070,300
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 704,720,060
Number of Sequences: 1070300
Number of extensions: 15357771
Number of successful extensions: 59044
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 55894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58786
length of database: 339,323,595
effective HSP length: 129
effective length of database: 201,254,895
effective search space used: 127796858325
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)