BLASTX 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Candida_albicans_chr7-r3-206043-205036-8
         (1005 letters)

Database: sptrembl 
           1,070,300 sequences; 339,323,595 total letters

Searching.................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

P34161|YOX1|YOX1_YEAST (SP: Saccharomyces cerevisiae (Baker's ye...   115   1e-24
Q04116|YHP1|Q04116 (TrEMBL: Saccharomyces cerevisiae (Baker's ye...   105   6e-22
O43988|WARIAI|O43988 (TrEMBL: Dictyostelium discoideum (Slime mo...    56   6e-07
Q9V3K6|ZEN2|Q9V3K6 (TrEMBL: Drosophila melanogaster (Fruit fly))...    56   8e-07
O43248|HOXC11|HXCB_HUMAN (SP: Homo sapiens (Human)) Homeobox pro...    55   1e-06
Q90470|HOXD11A|Q90470 (TrEMBL: Brachydanio rerio (Zebrafish) (Da...    55   1e-06
Q9HFI0|H1|Q9HFI0 (TrEMBL: Podospora anserina) Homeoprotein.            55   1e-06
P09082|GSB|GSB_DROME (SP: Drosophila melanogaster (Fruit fly)) G...    55   2e-06
O13202||O13202 (TrEMBL: Danio cf. aequipinnatus) Hoxd10 (Fragment).    54   3e-06
Q99160|HOY1|HOY1_YARLI (SP: Yarrowia lipolytica (Candida lipolyt...    53   6e-06
Q9DF46|HOXC10|Q9DF46 (TrEMBL: Ambystoma mexicanum (Axolotl)) Hom...    53   6e-06
Q801B1||Q801B1 (TrEMBL: Latimeria menadoensis (Indonesian coelac...    53   6e-06
Q9DF45|HOXC10|Q9DF45 (TrEMBL: Ambystoma mexicanum (Axolotl)) Hom...    53   6e-06
P40923|SPBC21B10.13C|YHZ3_SCHPO (SP: Schizosaccharomyces pombe (...    53   6e-06
Q801F1||Q801F1 (TrEMBL: Xenopus laevis (African clawed frog)) Ho...    53   6e-06
Q90469|HOXD10|HXDA_BRARE (SP: Brachydanio rerio (Zebrafish) (Dan...    52   8e-06
Q8BZY5||Q8BZY5 (TrEMBL: Mus musculus (Mouse)) Homeobox protein h...    52   8e-06
P31257|HOXC10|HXCA_MOUSE (SP: Mus musculus (Mouse)) Homeobox pro...    52   8e-06
Q9NYD6|HOXC10|HXCA_HUMAN (SP: Homo sapiens (Human)) Homeobox pro...    52   8e-06
Q9PWD6|HOXA10|HXAA_MORSA (SP: Morone saxatilis (Striped bass)) H...    52   8e-06
Q95US3|PBY1|Q95US3 (TrEMBL: Schistocerca americana (American gra...    52   1e-05
Q8BJI4|D130006K24RIK|Q8BJI4 (TrEMBL: Mus musculus (Mouse)) Retin...    52   1e-05
Q8MWG2|OTP|Q8MWG2 (TrEMBL: Patella vulgata (Common limpet)) Orth...    52   1e-05
Q9NFW4|CNOX-3|Q9NFW4 (TrEMBL: Hydra attenuata (Hydra) (Hydra vul...    52   1e-05
P09090|ZEN2|HMZ2_DROME (SP: Drosophila melanogaster (Fruit fly))...    52   1e-05
P78424|RPF1|RPF1_HUMAN (SP: Homo sapiens (Human)) Retina-derived...    52   1e-05
Q9PVQ7|HXOA9A|Q9PVQ7 (TrEMBL: Oryzias latipes (Medaka fish) (Jap...    52   1e-05
Q9W7M5|OTP|Q9W7M5 (TrEMBL: Brachydanio rerio (Zebrafish) (Danio ...    51   2e-05
Q90267|OTX3|OTX3_BRARE (SP: Brachydanio rerio (Zebrafish) (Danio...    51   2e-05
Q06858||Q06858 (TrEMBL: Saccharomyces cerevisiae (Baker's yeast)...    51   2e-05

>P34161|YOX1|YOX1_YEAST (SP: Saccharomyces cerevisiae (Baker's
           yeast)) Homeobox protein YOX1.
          Length = 385

 Score =  115 bits (287), Expect = 1e-24
 Identities = 59/108 (54%), Positives = 76/108 (70%), Gaps = 2/108 (1%)
 Frame = +1

Query: 442 KAYAFISHSLATFPLQEPSIDNAPLARRKRRRTSPHELNILNQEFALGTTPNKSRRIQIA 621
           +A+AFI+HS  TFP +EP IDNAPLARRKRRRTS  EL+IL  EF     P+K +RI++A
Sbjct: 151 RAFAFITHSQETFPKKEPKIDNAPLARRKRRRTSSQELSILQAEFEKCPAPSKEKRIELA 210

Query: 622 KKVSMTEKAVQIWFQNKRQSIRKQ-LNLEKEITVLPPTS-NYPPFQQH 759
           +   MTEKAVQIWFQNKRQ++++Q +   K  T++   S   PP   H
Sbjct: 211 ESCHMTEKAVQIWFQNKRQAVKRQRIATSKSTTIIQTVSPPSPPLDVH 258


>Q04116|YHP1|Q04116 (TrEMBL: Saccharomyces cerevisiae (Baker's
           yeast)) Homeodomain protein.
          Length = 353

 Score =  105 bits (263), Expect = 6e-22
 Identities = 50/86 (58%), Positives = 68/86 (79%)
 Frame = +1

Query: 442 KAYAFISHSLATFPLQEPSIDNAPLARRKRRRTSPHELNILNQEFALGTTPNKSRRIQIA 621
           +++AFI+HS  TFP +EP IDNA LARRKRRRTS +EL IL   F    TPNK++RI+++
Sbjct: 148 RSFAFITHSQETFPKKEPKIDNARLARRKRRRTSSYELGILQTAFDECPTPNKAKRIELS 207

Query: 622 KKVSMTEKAVQIWFQNKRQSIRKQLN 699
           ++ +M+EK+VQIWFQNKRQ+ +K  N
Sbjct: 208 EQCNMSEKSVQIWFQNKRQAAKKHKN 233


>O43988|WARIAI|O43988 (TrEMBL: Dictyostelium discoideum (Slime
           mold)) Homeobox-containing protein Wariai (Fragment).
          Length = 800

 Score = 56.2 bits (134), Expect = 6e-07
 Identities = 26/63 (41%), Positives = 41/63 (65%)
 Frame = +1

Query: 499 IDNAPLARRKRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKVSMTEKAVQIWFQNKRQ 678
           +D    +++KR+RTSP +L +L + F     PN + R Q+A ++ MT ++VQIWFQN+R 
Sbjct: 156 LDQDDPSKKKRKRTSPDQLKLLEKIFMAHQHPNLNLRSQLAVELHMTARSVQIWFQNRRA 215

Query: 679 SIR 687
             R
Sbjct: 216 KAR 218


>Q9V3K6|ZEN2|Q9V3K6 (TrEMBL: Drosophila melanogaster (Fruit fly))
           ZERKNUELLT protein 2 (ZEN-2).
          Length = 252

 Score = 55.8 bits (133), Expect = 8e-07
 Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 8/93 (8%)
 Frame = +1

Query: 469 LATFPLQEPSIDNAPLA------RRKRRRTSPHELNI--LNQEFALGTTPNKSRRIQIAK 624
           L  +P  E +++ AP A      + KR RT+   L +  L +EF L     ++RRI+I++
Sbjct: 19  LMMYPCVELNVEAAPTATTRSSEKSKRSRTAFSSLQLIELEREFHLNKYLARTRRIEISQ 78

Query: 625 KVSMTEKAVQIWFQNKRQSIRKQLNLEKEITVL 723
           ++++TE+ V+IWFQN+R  ++K  N +  I  L
Sbjct: 79  RLALTERQVKIWFQNRRMKLKKSTNRKGAIGAL 111


>O43248|HOXC11|HXCB_HUMAN (SP: Homo sapiens (Human)) Homeobox
           protein Hox-C11.
          Length = 304

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 27/77 (35%), Positives = 48/77 (62%)
 Frame = +1

Query: 460 SHSLATFPLQEPSIDNAPLARRKRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKVSMT 639
           +HS+A  P +  +  NAP  R+KR   S  ++  L +EF      NK +R+Q+++ +++T
Sbjct: 214 AHSVAKEPAKGAA-PNAPRTRKKRCPYSKFQIRELEREFFFNVYINKEKRLQLSRMLNLT 272

Query: 640 EKAVQIWFQNKRQSIRK 690
           ++ V+IWFQN+R   +K
Sbjct: 273 DRQVKIWFQNRRMKEKK 289


>Q90470|HOXD11A|Q90470 (TrEMBL: Brachydanio rerio (Zebrafish) (Danio
           rerio)) HoxD11.
          Length = 263

 Score = 55.1 bits (131), Expect = 1e-06
 Identities = 27/81 (33%), Positives = 52/81 (64%)
 Frame = +1

Query: 466 SLATFPLQEPSIDNAPLARRKRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKVSMTEK 645
           S++T   ++ S  +A  +R+KR   S +++  L +EF      NK +R+Q+++ +S+T++
Sbjct: 174 SVSTCDEEKNSXSSATKSRKKRCPYSKYQIRELEREFFFNVYINKEKRLQLSRMLSLTDR 233

Query: 646 AVQIWFQNKRQSIRKQLNLEK 708
            V+IWFQN+R    K+LN ++
Sbjct: 234 QVKIWFQNRRMK-EKKLNRDR 253


>Q9HFI0|H1|Q9HFI0 (TrEMBL: Podospora anserina) Homeoprotein.
          Length = 610

 Score = 55.1 bits (131), Expect = 1e-06
 Identities = 29/75 (38%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
 Frame = +1

Query: 523 RKRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKVSMTEKAVQIWFQNKRQSI----RK 690
           +KR+R +  +L  L  EF    TP  + R +IA++++MTE++VQIWFQN+R  I    +K
Sbjct: 69  QKRQRATQDQLTTLEIEFNKNPTPTATVRERIAEEINMTERSVQIWFQNRRAKIKMLAKK 128

Query: 691 QLNLEKEITVLPPTS 735
            L   +E+  + P S
Sbjct: 129 SLESGEELDTMIPES 143


>P09082|GSB|GSB_DROME (SP: Drosophila melanogaster (Fruit fly))
           Gooseberry protein (Gooseberry distal protein) (BSH9).
          Length = 427

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 27/84 (32%), Positives = 47/84 (55%)
 Frame = +1

Query: 490 EPSIDNAPLARRKRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKVSMTEKAVQIWFQN 669
           EPS+      RR R   S  +++ L + FA    P+   R ++A+   +TE  VQ+WF N
Sbjct: 176 EPSVQLKRKQRRSRTTFSNDQIDALERIFARTQYPDVYTREELAQSTGLTEARVQVWFSN 235

Query: 670 KRQSIRKQLNLEKEITVLPPTSNY 741
           +R  +RKQLN ++  +  P ++++
Sbjct: 236 RRARLRKQLNTQQVPSFAPTSTSF 259


>O13202||O13202 (TrEMBL: Danio cf. aequipinnatus) Hoxd10 (Fragment).
          Length = 84

 Score = 53.9 bits (128), Expect = 3e-06
 Identities = 27/79 (34%), Positives = 47/79 (59%)
 Frame = +1

Query: 505 NAPLARRKRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKVSMTEKAVQIWFQNKRQSI 684
           +A   R+KR   S H+   L +EF       + RR++I+K V++T++ V+IWFQN+R  +
Sbjct: 6   SAKSGRKKRCPYSKHQTLELEEEFLFNMYLTRERRLEISKSVNLTDRQVKIWFQNRRMKL 65

Query: 685 RKQLNLEKEITVLPPTSNY 741
           +K   + +E  +   TSN+
Sbjct: 66  KK---MSRENRIRELTSNF 81


>Q99160|HOY1|HOY1_YARLI (SP: Yarrowia lipolytica (Candida
           lipolytica)) Homeobox protein HOY1.
          Length = 509

 Score = 52.8 bits (125), Expect = 6e-06
 Identities = 23/57 (40%), Positives = 38/57 (66%)
 Frame = +1

Query: 526 KRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKVSMTEKAVQIWFQNKRQSIRKQL 696
           KR+R +  +L++L  E+ L  TP+ + R +I+  + MTE++VQIWFQN R   +K +
Sbjct: 19  KRQRANAQQLDVLRHEYRLCATPDAATRRRISALIDMTERSVQIWFQNTRAKQKKAM 75


>Q9DF46|HOXC10|Q9DF46 (TrEMBL: Ambystoma mexicanum (Axolotl))
           Homeodomain protein Hoxc10 long form.
          Length = 325

 Score = 52.8 bits (125), Expect = 6e-06
 Identities = 28/78 (35%), Positives = 47/78 (60%)
 Frame = +1

Query: 508 APLARRKRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKVSMTEKAVQIWFQNKRQSIR 687
           A   R+KR   + H+   L +EF       + RR++I+K +++T++ V+IWFQN+R  ++
Sbjct: 248 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSINLTDRQVKIWFQNRRMKLK 307

Query: 688 KQLNLEKEITVLPPTSNY 741
           K +N E  I  L  TSN+
Sbjct: 308 K-MNRENRIREL--TSNF 322


>Q801B1||Q801B1 (TrEMBL: Latimeria menadoensis (Indonesian
           coelacanth)) HoxC10 (Fragment).
          Length = 90

 Score = 52.8 bits (125), Expect = 6e-06
 Identities = 28/78 (35%), Positives = 47/78 (60%)
 Frame = +1

Query: 508 APLARRKRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKVSMTEKAVQIWFQNKRQSIR 687
           A   R+KR   + H+   L +EF       + RR++I+K +++T++ V+IWFQN+R  ++
Sbjct: 13  AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSINLTDRQVKIWFQNRRMKLK 72

Query: 688 KQLNLEKEITVLPPTSNY 741
           K +N E  I  L  TSN+
Sbjct: 73  K-MNRENRIREL--TSNF 87


>Q9DF45|HOXC10|Q9DF45 (TrEMBL: Ambystoma mexicanum (Axolotl))
           Homeodomain protein Hoxc10 short form.
          Length = 100

 Score = 52.8 bits (125), Expect = 6e-06
 Identities = 28/78 (35%), Positives = 47/78 (60%)
 Frame = +1

Query: 508 APLARRKRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKVSMTEKAVQIWFQNKRQSIR 687
           A   R+KR   + H+   L +EF       + RR++I+K +++T++ V+IWFQN+R  ++
Sbjct: 23  AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSINLTDRQVKIWFQNRRMKLK 82

Query: 688 KQLNLEKEITVLPPTSNY 741
           K +N E  I  L  TSN+
Sbjct: 83  K-MNRENRIREL--TSNF 97


>P40923|SPBC21B10.13C|YHZ3_SCHPO (SP: Schizosaccharomyces pombe
           (Fission yeast)) Hypothetical protein C21B10.13c in
           chromosome II.
          Length = 201

 Score = 52.8 bits (125), Expect = 6e-06
 Identities = 26/59 (44%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
 Frame = +1

Query: 520 RRKRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKV--SMTEKAVQIWFQNKRQSIRK 690
           +++RRRT+  E  +L Q F     P+   R +++KK+  SMT + +QIWFQNKRQS+R+
Sbjct: 34  KKRRRRTTDAEATLLEQYFLKTPKPSLIERQELSKKLKSSMTPRELQIWFQNKRQSLRR 92


>Q801F1||Q801F1 (TrEMBL: Xenopus laevis (African clawed frog))
           Hoxc10.
          Length = 351

 Score = 52.8 bits (125), Expect = 6e-06
 Identities = 28/78 (35%), Positives = 47/78 (60%)
 Frame = +1

Query: 508 APLARRKRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKVSMTEKAVQIWFQNKRQSIR 687
           A   R+KR   + H+   L +EF       + RR++I+K +++T++ V+IWFQN+R  ++
Sbjct: 274 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSINLTDRQVKIWFQNRRMKLK 333

Query: 688 KQLNLEKEITVLPPTSNY 741
           K +N E  I  L  TSN+
Sbjct: 334 K-MNRENRIREL--TSNF 348


>Q90469|HOXD10|HXDA_BRARE (SP: Brachydanio rerio (Zebrafish) (Danio
           rerio)) Homeobox protein Hox-D10.
          Length = 343

 Score = 52.4 bits (124), Expect = 8e-06
 Identities = 27/78 (34%), Positives = 45/78 (57%)
 Frame = +1

Query: 508 APLARRKRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKVSMTEKAVQIWFQNKRQSIR 687
           A   R+KR   + H+   L +EF       + RR++I+K VS+T++ V+IWFQN+R  ++
Sbjct: 255 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVSLTDRQVKIWFQNRRMKLK 314

Query: 688 KQLNLEKEITVLPPTSNY 741
           K ++ E  I  L    N+
Sbjct: 315 K-MSRENRIRELTSNLNF 331


>Q8BZY5||Q8BZY5 (TrEMBL: Mus musculus (Mouse)) Homeobox protein
           hox-C10.
          Length = 312

 Score = 52.4 bits (124), Expect = 8e-06
 Identities = 28/78 (35%), Positives = 47/78 (60%)
 Frame = +1

Query: 508 APLARRKRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKVSMTEKAVQIWFQNKRQSIR 687
           A   R+KR   + H+   L +EF       + RR++I+K +++T++ V+IWFQN+R  ++
Sbjct: 235 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLK 294

Query: 688 KQLNLEKEITVLPPTSNY 741
           K +N E  I  L  TSN+
Sbjct: 295 K-MNRENRIREL--TSNF 309


>P31257|HOXC10|HXCA_MOUSE (SP: Mus musculus (Mouse)) Homeobox
           protein Hox-C10 (Hox-3.6).
          Length = 342

 Score = 52.4 bits (124), Expect = 8e-06
 Identities = 28/78 (35%), Positives = 47/78 (60%)
 Frame = +1

Query: 508 APLARRKRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKVSMTEKAVQIWFQNKRQSIR 687
           A   R+KR   + H+   L +EF       + RR++I+K +++T++ V+IWFQN+R  ++
Sbjct: 265 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLK 324

Query: 688 KQLNLEKEITVLPPTSNY 741
           K +N E  I  L  TSN+
Sbjct: 325 K-MNRENRIREL--TSNF 339


>Q9NYD6|HOXC10|HXCA_HUMAN (SP: Homo sapiens (Human)) Homeobox
           protein Hox-C10.
          Length = 342

 Score = 52.4 bits (124), Expect = 8e-06
 Identities = 28/78 (35%), Positives = 47/78 (60%)
 Frame = +1

Query: 508 APLARRKRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKVSMTEKAVQIWFQNKRQSIR 687
           A   R+KR   + H+   L +EF       + RR++I+K +++T++ V+IWFQN+R  ++
Sbjct: 265 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKTINLTDRQVKIWFQNRRMKLK 324

Query: 688 KQLNLEKEITVLPPTSNY 741
           K +N E  I  L  TSN+
Sbjct: 325 K-MNRENRIREL--TSNF 339


>Q9PWD6|HOXA10|HXAA_MORSA (SP: Morone saxatilis (Striped bass))
           Homeobox protein Hox-A10.
          Length = 289

 Score = 52.4 bits (124), Expect = 8e-06
 Identities = 27/78 (34%), Positives = 45/78 (57%)
 Frame = +1

Query: 508 APLARRKRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKVSMTEKAVQIWFQNKRQSIR 687
           A   R+KR   + H+   L +EF       + RR++I+K V +T++ V+IWFQN+R  ++
Sbjct: 212 AKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVHLTDRQVKIWFQNRRMKLK 271

Query: 688 KQLNLEKEITVLPPTSNY 741
           K   + +E  +   TSNY
Sbjct: 272 K---MTRENRIRELTSNY 286


>Q95US3|PBY1|Q95US3 (TrEMBL: Schistocerca americana (American
           grasshopper)) Pairberry 1 transcription factor
           (Fragment).
          Length = 234

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 31/88 (35%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
 Frame = +1

Query: 490 EPSIDNAPLARRKRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKVSMTEKAVQIWFQN 669
           EP I      RR R   S  +L  L + F     P+   R ++A+K  +TE  VQ+WF N
Sbjct: 127 EPGIPLKRKQRRSRTTFSGDQLETLERAFQRTQYPDVYTREELAQKTKLTEARVQVWFSN 186

Query: 670 KRQSIRKQLNLEKEIT--VLPPTSNYPP 747
           +R  +RKQLN     +    PP    PP
Sbjct: 187 RRARLRKQLNSPSRPSRRCRPPPPPLPP 214


>Q8BJI4|D130006K24RIK|Q8BJI4 (TrEMBL: Mus musculus (Mouse))
           Retina-derived POU-domain factor-1 homolog.
          Length = 691

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
 Frame = +1

Query: 499 IDNAPLARRKRRRT-SPHELNILNQEFALGTTPNKSRRIQIAKKVSMTEKAVQIWFQNKR 675
           I + P  +RKRR + +P  L ILN  F   T P+     +IA+K++   + V++WF NKR
Sbjct: 600 IGSEPSKKRKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKR 659

Query: 676 QSIRKQLNLEKEITVLPPTSNYP 744
           Q+++   N  K +    PTS  P
Sbjct: 660 QALK---NTIKRLKQHEPTSAAP 679


>Q8MWG2|OTP|Q8MWG2 (TrEMBL: Patella vulgata (Common limpet))
           Orthopedia (Fragment).
          Length = 254

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 28/87 (32%), Positives = 48/87 (55%), Gaps = 3/87 (3%)
 Frame = +1

Query: 499 IDNAPLARRKRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKVSMTEKAVQIWFQNKR- 675
           +D     +R R R +P +LN L + FA    P+   R ++A ++ +TE  VQ+WFQN+R 
Sbjct: 27  LDKPSKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREEMALRIGLTESRVQVWFQNRRA 86

Query: 676 --QSIRKQLNLEKEITVLPPTSNYPPF 750
             +  +K  N+ +    L P++ + PF
Sbjct: 87  KWKKRKKATNVFRTPGALLPSTGFGPF 113


>Q9NFW4|CNOX-3|Q9NFW4 (TrEMBL: Hydra attenuata (Hydra) (Hydra
           vulgaris)) Homeoprotein (Fragment).
          Length = 82

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 25/74 (33%), Positives = 45/74 (60%)
 Frame = +1

Query: 517 ARRKRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKVSMTEKAVQIWFQNKRQSIRKQL 696
           ++RKR   S  +L+ L +EF+      K RR ++AK +  +++ ++IWFQN+R   +K++
Sbjct: 8   SKRKRMTYSKFQLHELEKEFSFNHFLRKERRTELAKLLKFSDRQIKIWFQNRRMKFKKEI 67

Query: 697 NLEKEITVLPPTSN 738
           N  K +  LP  +N
Sbjct: 68  NKVK-LRNLPEDTN 80


>P09090|ZEN2|HMZ2_DROME (SP: Drosophila melanogaster (Fruit fly))
           Zerknuellt protein 2 (ZEN-2).
          Length = 252

 Score = 52.0 bits (123), Expect = 1e-05
 Identities = 31/93 (33%), Positives = 54/93 (58%), Gaps = 8/93 (8%)
 Frame = +1

Query: 469 LATFPLQEPSIDNAPLA------RRKRRRTSPHELNI--LNQEFALGTTPNKSRRIQIAK 624
           L  +P  E +++ A  A      + KR RT+   L +  L +EF L     ++RRI+I++
Sbjct: 19  LMMYPCVEFNVEAARTATTRSSEKSKRSRTAFSSLQLIELEREFHLNKYLARTRRIEISQ 78

Query: 625 KVSMTEKAVQIWFQNKRQSIRKQLNLEKEITVL 723
           ++++TE+ V+IWFQN+R  ++K  N +  I  L
Sbjct: 79  RLALTERQVKIWFQNRRMKLKKSTNRKGAIGAL 111


>P78424|RPF1|RPF1_HUMAN (SP: Homo sapiens (Human)) Retina-derived
           POU-domain factor-1 (RPF-1).
          Length = 684

 Score = 51.6 bits (122), Expect = 1e-05
 Identities = 28/80 (35%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
 Frame = +1

Query: 499 IDNAPLARRKRRRT-SPHELNILNQEFALGTTPNKSRRIQIAKKVSMTEKAVQIWFQNKR 675
           I + P  +RKRR + +P  L ILN  F   T P+     +IA+K++   + V++WF NKR
Sbjct: 593 IGSEPSKKRKRRTSFTPQALEILNAHFEKNTHPSGQEMTEIAEKLNYDREVVRVWFCNKR 652

Query: 676 QSIR---KQLNLEKEITVLP 726
           Q+++   K+L   +  T +P
Sbjct: 653 QALKNTIKRLKQHEPATAVP 672


>Q9PVQ7|HXOA9A|Q9PVQ7 (TrEMBL: Oryzias latipes (Medaka fish)
           (Japanese ricefish)) HOXA9A.
          Length = 267

 Score = 51.6 bits (122), Expect = 1e-05
 Identities = 27/91 (29%), Positives = 51/91 (56%), Gaps = 9/91 (9%)
 Frame = +1

Query: 445 AYAFISHSLATFPLQEPSID---------NAPLARRKRRRTSPHELNILNQEFALGTTPN 597
           A A +S  ++    ++P +D         +A   R+KR   + H++  L +EF   T   
Sbjct: 167 AQADVSADVSAEGEEKPGLDPNNPVSNWLHASATRKKRCPYTKHQILELEKEFLFNTYLT 226

Query: 598 KSRRIQIAKKVSMTEKAVQIWFQNKRQSIRK 690
           + RR ++A+ +++TE+ V+IWFQN+R  ++K
Sbjct: 227 RDRRYEVARLLNLTERQVKIWFQNRRMKMKK 257


>Q9W7M5|OTP|Q9W7M5 (TrEMBL: Brachydanio rerio (Zebrafish) (Danio
           rerio)) Orthopedia protein.
          Length = 328

 Score = 51.2 bits (121), Expect = 2e-05
 Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 3/85 (3%)
 Frame = +1

Query: 505 NAPLARRKRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKVSMTEKAVQIWFQNKR--- 675
           N    +R R R +P +LN L + FA    P+   R ++A ++ +TE  VQ+WFQN+R   
Sbjct: 108 NQQKQKRHRTRFTPAQLNELERSFAKTHYPDIFMREELALRIGLTESRVQVWFQNRRAKW 167

Query: 676 QSIRKQLNLEKEITVLPPTSNYPPF 750
           +  +K  N+ +    L PT   P F
Sbjct: 168 KKRKKTTNVFRAPGTLLPTHGLPQF 192


>Q90267|OTX3|OTX3_BRARE (SP: Brachydanio rerio (Zebrafish) (Danio
           rerio)) Homeobox protein OTX3 (ZOTX3).
          Length = 338

 Score = 51.2 bits (121), Expect = 2e-05
 Identities = 39/160 (24%), Positives = 62/160 (38%), Gaps = 18/160 (11%)
 Frame = +1

Query: 472 ATFPLQEPSID---NAPLARRKRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKVSMTE 642
           AT  L  PS+    N    RR+R   +  +L+IL   FA    P+   R ++A K+++ E
Sbjct: 20  ATMDLLHPSVGYPTNPRKQRRERTTFTRTQLDILESLFAKTRYPDIFMREEVALKINLPE 79

Query: 643 KAVQIWFQNKRQSIRKQLNLEKEITVLPPTSNYPPFQQHQP------------EQISTLX 786
             VQ+WF+N+R   R+Q       + + P    P   +  P               S+  
Sbjct: 80  SRVQVWFKNRRAKCRQQQQQSSTNSKIRPAKKKPSPSRESPGSESSGHFTPPAVSSSSSS 139

Query: 787 XXXXXXXXXXXXXXXXXXXXXAQSTPLP---KPASISPLP 897
                                +  TP+P    PA +SP+P
Sbjct: 140 SSSSSGSNPSALSGVGLISSSSSGTPVPSIWSPAPVSPVP 179


>Q06858||Q06858 (TrEMBL: Saccharomyces cerevisiae (Baker's yeast))
           PHO2 protein.
          Length = 495

 Score = 51.2 bits (121), Expect = 2e-05
 Identities = 26/73 (35%), Positives = 43/73 (58%)
 Frame = +1

Query: 502 DNAPLARRKRRRTSPHELNILNQEFALGTTPNKSRRIQIAKKVSMTEKAVQIWFQNKRQS 681
           D+ P  R KR R     L++L ++F +  TP+   R +I+  + M EK V+IWFQN+R  
Sbjct: 9   DSGP-QRPKRTRAKGEALDVLKRKFEINPTPSLVERKKISDLIGMPEKNVRIWFQNRRAK 67

Query: 682 IRKQLNLEKEITV 720
           +RK+ +   + T+
Sbjct: 68  LRKKQHGSNKDTI 80


  Database: sptrembl
    Posted date:  Oct 14, 2003  6:47 PM
  Number of letters in database: 339,323,595
  Number of sequences in database:  1,070,300
  
Lambda     K      H
   0.312    0.127    0.356 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 236,685,568
Number of Sequences: 1070300
Number of extensions: 4420671
Number of successful extensions: 27258
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27195
length of database: 339,323,595
effective HSP length: 122
effective length of database: 208,746,995
effective search space used: 44254362940
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)