BLASTX 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Candida_albicans_chr7-r3-709173-708487-5
         (684 letters)

Database: sptrembl 
           1,070,300 sequences; 339,323,595 total letters

Searching.................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q9Y6I8|PXMP4|PMP4_HUMAN (SP: Homo sapiens (Human)) Peroxisomal m...    96   3e-19
P59382|PXMP4|PMP4_RAT (SP: Rattus norvegicus (Rat)) Peroxisomal ...    89   3e-17
Q9JJW0|PXMP4|PMP4_MOUSE (SP: Mus musculus (Mouse)) Peroxisomal m...    88   7e-17
P91262|F18F11.1|P91262 (TrEMBL: Caenorhabditis elegans) Hypothet...    84   1e-15
Q9BBF8|MATK|Q9BBF8 (TrEMBL: Reinwardtia indica) Maturase K (Intr...    34   1.7  
Q95ER8|MATK|Q95ER8 (TrEMBL: Gallardoa fischeri) Intron maturase ...    32   6.3  
Q97T80|SP0071|Q97T80 (TrEMBL: Streptococcus pneumoniae) Immunogl...    32   8.2  

>Q9Y6I8|PXMP4|PMP4_HUMAN (SP: Homo sapiens (Human)) Peroxisomal
           membrane protein 4 (24 kDa peroxisomal intrinsic
           membrane protein).
          Length = 211

 Score = 96.3 bits (238), Expect = 3e-19
 Identities = 66/221 (29%), Positives = 104/221 (47%), Gaps = 3/221 (1%)
 Frame = +1

Query: 25  YRPLFEVLKSARNGIVYGGKLRFLHALVINLLYRSGPIVPRLKSVLEATKDHAQVLAAFA 204
           Y     VLK  RNG VYG K+R  HALV+  L+R+G +  +L ++L+AT  H+  LA F 
Sbjct: 22  YHAALAVLKGFRNGAVYGAKIRAPHALVMTFLFRNGSLQEKLWAILQATYIHSWNLARFV 81

Query: 205 IIYKACVMILKQDAFLGDKNLGLIKFIAGSFGSWIVYSQHFNFFHGGITHQITLYCFSRV 384
             YK    +    +++  K      F+A   G  +V+ ++ N     I  QI +Y  SRV
Sbjct: 82  FTYKG---LRALQSYIQGKTYPAHAFLAAFLGGILVFGENNN-----INSQINMYLLSRV 133

Query: 385 VLALSKILLDKYLNCFQPGFRNYQGELIHYKDXXXXXXXXXXXIVYNKLWKYFAVLT--- 555
           + ALS++ ++K                                 +    W  F +LT   
Sbjct: 134 LFALSRLAVEK-------------------------------GYIPEPRWDPFPLLTAVV 162

Query: 556 WGLVMLIYDYQPQYLQSSLRHSMAYIYDVEMDTWSNWREFL 678
           WGLV+ +++Y    LQ SL+ SM Y+Y+ + + W +  +FL
Sbjct: 163 WGLVLWLFEYHRSTLQPSLQSSMTYLYE-DSNVWHDISDFL 202


>P59382|PXMP4|PMP4_RAT (SP: Rattus norvegicus (Rat)) Peroxisomal
           membrane protein 4 (24 kDa peroxisomal intrinsic
           membrane protein).
          Length = 211

 Score = 89.4 bits (220), Expect = 3e-17
 Identities = 65/222 (29%), Positives = 107/222 (48%), Gaps = 4/222 (1%)
 Frame = +1

Query: 25  YRPLFEVLKSARNGIVYGGKLRFLHALVINLLYRSGPIVPRLKSVLEATKDHAQVLAAFA 204
           Y     V+K  RNG VYG K+R  HALV+  L+RSG +  +L+++L+AT  H++ LA F 
Sbjct: 22  YHAALAVIKGFRNGAVYGVKIRAPHALVMTFLFRSGSLQEKLQAILKATYTHSRNLACFV 81

Query: 205 IIYKACVMILKQDAFLGDKNLGLIKFIAGSFGSWIVYSQHFNFFHGGITHQITLYCFSRV 384
             YK+ +  L+     G   +    F+A   G  +++ ++ N     I  QI +Y  SRV
Sbjct: 82  FTYKS-LQALQSHVQGGTHQMH--SFLAAFIGGLLLFGENNN-----INSQINMYLTSRV 133

Query: 385 VLALSKILLDK-YLNCFQPGFRNYQGELIHYKDXXXXXXXXXXXIVYNKLWKYFAVLT-- 555
           + AL ++ ++K Y+   +                                W  F + T  
Sbjct: 134 LFALCRLGVEKGYIPALK--------------------------------WDPFPLHTAV 161

Query: 556 -WGLVMLIYDYQPQYLQSSLRHSMAYIYDVEMDTWSNWREFL 678
            WGLV+ +++Y    LQ SL+ SM Y+Y+ + + W +  +FL
Sbjct: 162 IWGLVLWLFEYHRPTLQPSLQSSMTYLYE-DSNVWHDLSDFL 202


>Q9JJW0|PXMP4|PMP4_MOUSE (SP: Mus musculus (Mouse)) Peroxisomal
           membrane protein 4 (24 kDa peroxisomal intrinsic
           membrane protein).
          Length = 211

 Score = 88.2 bits (217), Expect = 7e-17
 Identities = 65/222 (29%), Positives = 108/222 (48%), Gaps = 4/222 (1%)
 Frame = +1

Query: 25  YRPLFEVLKSARNGIVYGGKLRFLHALVINLLYRSGPIVPRLKSVLEATKDHAQVLAAFA 204
           Y     V+K  RNG VYG K+R  HALV+  L+RSG +  +L+++L+AT  H++ LA F 
Sbjct: 22  YHAALAVIKGFRNGAVYGVKIRAPHALVMTFLFRSGSLREKLQAILKATYIHSRNLACFV 81

Query: 205 IIYKACVMILKQDAFLGDKNLGLIKFIAGSFGSWIVYSQHFNFFHGGITHQITLYCFSRV 384
             YK+   +  Q    G+ +  +  F+A   G  +++ ++ N     I  QI +Y  SRV
Sbjct: 82  FAYKSLHAL--QSHVQGETH-QMHSFLAAFIGGLLLFGENNN-----INSQINMYLTSRV 133

Query: 385 VLALSKILLDK-YLNCFQPGFRNYQGELIHYKDXXXXXXXXXXXIVYNKLWKYFAVLT-- 555
           + AL ++ ++K Y+   +                                W  F + T  
Sbjct: 134 LYALCRLGVEKGYIPALK--------------------------------WDPFPLHTAV 161

Query: 556 -WGLVMLIYDYQPQYLQSSLRHSMAYIYDVEMDTWSNWREFL 678
            WGLV+ +++Y    LQ SL+ SM Y+Y+ + + W +  +FL
Sbjct: 162 IWGLVLWLFEYHRPTLQPSLQSSMTYLYE-DSNVWHDLSDFL 202


>P91262|F18F11.1|P91262 (TrEMBL: Caenorhabditis elegans)
           Hypothetical protein.
          Length = 210

 Score = 84.0 bits (206), Expect = 1e-15
 Identities = 60/215 (27%), Positives = 97/215 (45%)
 Frame = +1

Query: 34  LFEVLKSARNGIVYGGKLRFLHALVINLLYRSGPIVPRLKSVLEATKDHAQVLAAFAIIY 213
           L   LK  RNG+VYG ++R  HALV+  L+  G I+ +L ++   TK HA  L  F   Y
Sbjct: 29  LLAALKGLRNGLVYGVRIRAPHALVMVFLFGEGTILQKLLTIFRLTKTHALNLGKFVFSY 88

Query: 214 KACVMILKQDAFLGDKNLGLIKFIAGSFGSWIVYSQHFNFFHGGITHQITLYCFSRVVLA 393
           K     L +   +  K      F A     + V+ +     +  +  QI LY  SR+V+ 
Sbjct: 89  KFLQGALSE---IDGKKKEWHSFAAALVMGYYVFGE-----NNAVNMQINLYLLSRIVVG 140

Query: 394 LSKILLDKYLNCFQPGFRNYQGELIHYKDXXXXXXXXXXXIVYNKLWKYFAVLTWGLVML 573
           L+K+  ++ +   QP F                            ++  F    WG+V+ 
Sbjct: 141 LTKLAANEKI-IPQPNF---------------------------PVFPLFGAAVWGIVLW 172

Query: 574 IYDYQPQYLQSSLRHSMAYIYDVEMDTWSNWREFL 678
           ++++ P  LQ SL+ SM Y+Y  + + WS+ + FL
Sbjct: 173 LFEFHPTVLQGSLQKSMTYLYH-DSNYWSDIKTFL 206


>Q9BBF8|MATK|Q9BBF8 (TrEMBL: Reinwardtia indica) Maturase K (Intron
           maturase).
          Length = 516

 Score = 33.9 bits (76), Expect = 1.7
 Identities = 19/75 (25%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = +1

Query: 418 YLNCFQPGFRNYQGELIHY-KDXXXXXXXXXXXIVYNKLWKYFAVLTWGLVMLIYDYQPQ 594
           + NCF+ G   ++   +HY +            ++  K WKY+ V  W     ++  QP+
Sbjct: 261 FANCFRTGLSLFKDPFMHYARYQGKYILASKGTLLLIKKWKYYLVNLWQCHFYVWS-QPE 319

Query: 595 --YLQSSLRHSMAYI 633
             YL S  +HS+ ++
Sbjct: 320 NIYLNSLSKHSIHFL 334


>Q95ER8|MATK|Q95ER8 (TrEMBL: Gallardoa fischeri) Intron maturase
           (Maturase K).
          Length = 506

 Score = 32.0 bits (71), Expect = 6.3
 Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
 Frame = +1

Query: 418 YLNCFQPGFRNYQGELIHY-KDXXXXXXXXXXXIVYNKLWKYFAVLTWGLVMLIYDY-QP 591
           + N F+   R ++   +HY +            ++  K WKYF V  W     ++ + +P
Sbjct: 259 FTNDFKANLRLFKDPFMHYVRYQGKGILASKSTLLLMKKWKYFFVNLWQFHFYVWVHPEP 318

Query: 592 QYLQSSLRHSMAYI 633
            Y++S   HS+ ++
Sbjct: 319 IYMKSLSNHSLDFL 332


>Q97T80|SP0071|Q97T80 (TrEMBL: Streptococcus pneumoniae)
            Immunoglobulin A1 protease.
          Length = 1856

 Score = 31.6 bits (70), Expect = 8.2
 Identities = 22/79 (27%), Positives = 33/79 (41%)
 Frame = +1

Query: 244  AFLGDKNLGLIKFIAGSFGSWIVYSQHFNFFHGGITHQITLYCFSRVVLALSKILLDKYL 423
            A L DKN+G IK   G  G W  Y+     +  G               +L+  +LD+ L
Sbjct: 1448 ARLTDKNIGSIKEFFGPVGKWYEYNSSAGAYANG---------------SLTHFVLDRLL 1492

Query: 424  NCFQPGFRNYQGELIHYKD 480
            + +  G   Y  E++H  D
Sbjct: 1493 DAY--GTSVYTHEMVHNSD 1509


  Database: sptrembl
    Posted date:  Oct 14, 2003  6:47 PM
  Number of letters in database: 339,323,595
  Number of sequences in database:  1,070,300
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 217,206,081
Number of Sequences: 1070300
Number of extensions: 4663086
Number of successful extensions: 10881
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10737
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10875
length of database: 339,323,595
effective HSP length: 117
effective length of database: 214,098,495
effective search space used: 23550834450
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)