BLASTX 2.2.6 [Apr-09-2003]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Candida_albicans_chr7-r3-73938-72658-7
         (1278 letters)

Database: sptrembl 
           1,070,300 sequences; 339,323,595 total letters

Searching.................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

P25555|GBP2|GBP2_YEAST (SP: Saccharomyces cerevisiae (Baker's ye...   244   1e-63
P38922|HRB1|HRB1_YEAST (SP: Saccharomyces cerevisiae (Baker's ye...   241   2e-62
Q874Y8||Q874Y8 (TrEMBL: Podospora anserina) DNA centromeric regi...   164   2e-39
Q8J0M5|GBP2|Q8J0M5 (TrEMBL: Saccharomyces bayanus (Yeast) (Sacch...   153   5e-36
Q9P3U1|SPAC328.05|Q9P3U1 (TrEMBL: Schizosaccharomyces pombe (Fis...   150   2e-35
Q8J0M9|GBP2|Q8J0M9 (TrEMBL: Saccharomyces paradoxus (Yeast)) GBP...   124   2e-27
Q08935||ROC1_NICSY (SP: Nicotiana sylvestris (Wood tobacco)) 29 ...   103   3e-21
Q39568|GBP1|Q39568 (TrEMBL: Chlamydomonas reinhardtii) Gbp1p.         102   1e-20
P49313||ROC1_NICPL (SP: Nicotiana plumbaginifolia (Leadwort-leav...   101   2e-20
Q876Z0||Q876Z0 (TrEMBL: Ashbya gossypii (Yeast) (Eremothecium go...   100   5e-20
Q43349|RBP29|ROC2_ARATH (SP: Arabidopsis thaliana (Mouse-ear cre...   100   6e-20
Q8QZZ1|MYEF2|Q8QZZ1 (TrEMBL: Mus musculus (Mouse)) Myelin gene e...    98   2e-19
Q8C854|MYEF2|Q8C854 (TrEMBL: Mus musculus (Mouse)) Myelin basic ...    98   2e-19
Q8W214||Q8W214 (TrEMBL: Solanum tuberosum (Potato)) Single-stran...    97   4e-19
Q08937||ROC2_NICSY (SP: Nicotiana sylvestris (Wood tobacco)) 29 ...    96   7e-19
Q9H922||Q9H922 (TrEMBL: Homo sapiens (Human)) Hypothetical prote...    96   9e-19
Q8L941||Q8L941 (TrEMBL: Arabidopsis thaliana (Mouse-ear cress)) ...    96   1e-18
Q9ZUU4|AT2G37220|ROC1_ARATH (SP: Arabidopsis thaliana (Mouse-ear...    96   1e-18
P49314||ROC2_NICPL (SP: Nicotiana plumbaginifolia (Leadwort-leav...    95   2e-18
Q9P2K5|KIAA1341|Q9P2K5 (TrEMBL: Homo sapiens (Human)) Hypothetic...    95   2e-18
Q8LHN4|P0519E12.13|Q8LHN4 (TrEMBL: Oryza sativa (japonica cultiv...    94   3e-18
Q86PS0|GBP|Q86PS0 (TrEMBL: Cryptosporidium parvum) Putative sing...    91   2e-17
Q9Y655||Q9Y655 (TrEMBL: Homo sapiens (Human)) Myelin gene expres...    91   3e-17
Q8S7G2|OSJNBB0048D20.12|Q8S7G2 (TrEMBL: Oryza sativa (Rice)) Put...    91   4e-17
Q23796||Q23796 (TrEMBL: Chironomus tentans (Midge)) hnRNP protein.     90   7e-17
Q41367||Q41367 (TrEMBL: Spinacia oleracea (Spinach)) 24 kDa RNA ...    86   7e-16
Q09167|SFRS5|SFR5_RAT (SP: Rattus norvegicus (Rat)) Splicing fac...    86   7e-16
P26686|E(DFD)|SR55_DROME (SP: Drosophila melanogaster (Fruit fly...    84   4e-15
Q9VFT0|B52|Q9VFT0 (TrEMBL: Drosophila melanogaster (Fruit fly)) ...    84   5e-15
Q9GQI7||Q9GQI7 (TrEMBL: Caenorhabditis elegans) SF2.                   83   6e-15

>P25555|GBP2|GBP2_YEAST (SP: Saccharomyces cerevisiae (Baker's yeast))
            Single-strand telomeric DNA-binding protein GBP2
            (G-strand binding protein 2) (RAP1 localization factor
            6).
          Length = 427

 Score =  244 bits (624), Expect = 1e-63
 Identities = 135/342 (39%), Positives = 203/342 (59%), Gaps = 3/342 (0%)
 Frame = +1

Query: 247  TERNFDNSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNKGRSRGMATVEFNSKDDVR 426
            T+RNF+NSIF+ N+ FDCT  D++++F     +V ADI+T+KG  RGM TVEF   + V+
Sbjct: 116  TKRNFENSIFVRNLTFDCTPEDLKELFGTVGEVVEADIITSKGHHRGMGTVEFTKNESVQ 175

Query: 427  EAINKFDRYEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSRDRYNDRYQSSRR 606
            +AI+KFD   +  R++ VRQD PPPE   ++           S+  +R+  ++       
Sbjct: 176  DAISKFDGALFMDRKLMVRQDNPPPEAAKEF-----------SKKATREEIDN------- 217

Query: 607  NDNYAPPAPPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFGTV 786
                         G EVFI NLP+S+NWQ+LKD+ ++ G V+RADV LD  G SRGFG+V
Sbjct: 218  -------------GFEVFIINLPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSV 264

Query: 787  VFNTEEEAAKAVEMFQGYEIEGRKLDXXXXXXXXXXXXYERDSYRSS-DTTEKSSYGDRS 963
            ++ TE+E  +A++ F G E+EGR L+               +  R   + T  +  G   
Sbjct: 265  IYPTEDEMIRAIDTFNGMEVEGRVLEVREGRFNKRKNNDRYNQRREDLEDTRGTEPGLAQ 324

Query: 964  KSAV--ANKNSEFTDGVTADGEKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQYAD 1137
             +AV      ++FT+GV   G+++  IY +NLPF+T   DL+DLF  +G+   AE++  +
Sbjct: 325  DAAVHIDETAAKFTEGVNPGGDRNCFIYCSNLPFSTARSDLFDLFGPIGKINNAELKPQE 384

Query: 1138 DGRPSGNAVVQFEIADLAENAILQLNNYLYGGRNLQISYAKR 1263
            +G+P+G AVV++E    A+  I +LNNY YGG +LQISYA+R
Sbjct: 385  NGQPTGVAVVEYENLVDADFCIQKLNNYNYGGCSLQISYARR 426


>P38922|HRB1|HRB1_YEAST (SP: Saccharomyces cerevisiae (Baker's yeast))
            HRB1 protein (TOM34 protein).
          Length = 429

 Score =  241 bits (614), Expect = 2e-62
 Identities = 138/351 (39%), Positives = 186/351 (52%), Gaps = 5/351 (1%)
 Frame = +1

Query: 226  DADYRSKTERNFDNSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNKGRSRGMATVEF 405
            D+ Y  K  RN+ NSIF+GN+ +D T  D+ + F +   +VRADI+T++G  RGM TVEF
Sbjct: 123  DSTYEEKVNRNYSNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSRGHHRGMGTVEF 182

Query: 406  NSKDDVREAINKFDRYEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSRDRYND 585
             + DDV  AI ++D   +  R+IFVRQD PPP           RG    +R         
Sbjct: 183  TNSDDVDRAIRQYDGAFFMDRKIFVRQDNPPPSNNIKERKALDRGELRHNRKTH------ 236

Query: 586  RYQSSRRNDNYAPPAPPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGN 765
                                  EV + NLP SVNWQALKD+ ++ G V  ADV LD  G 
Sbjct: 237  ----------------------EVIVKNLPASVNWQALKDIFKECGNVAHADVELDGDGV 274

Query: 766  SRGFGTVVFNTEEEAAKAVEMFQGYEIEGRKLDXXXXXXXXXXXXYERDSYRSSDTTEKS 945
            S G GTV F   ++  +A+E + GY IEG  LD                  +S ++    
Sbjct: 275  STGSGTVSFYDIKDLHRAIEKYNGYSIEGNVLDV-----------------KSKESVHNH 317

Query: 946  SYGD-----RSKSAVANKNSEFTDGVTADGEKSDTIYVANLPFATQDDDLYDLFETVGRT 1110
            S GD        S V  +  +FT+ V   GE++  IY +NLPF+T   DLYDLFET+G+ 
Sbjct: 318  SDGDDVDIPMDDSPVNEEARKFTENVVGGGERNRLIYCSNLPFSTAKSDLYDLFETIGKV 377

Query: 1111 TKAEIQYADDGRPSGNAVVQFEIADLAENAILQLNNYLYGGRNLQISYAKR 1263
              AE++Y   G P+G AVV+++  D A+  I +LNNY YGG +L ISYAKR
Sbjct: 378  NNAELRYDSKGAPTGIAVVEYDNVDDADVCIERLNNYNYGGCDLDISYAKR 428


>Q874Y8||Q874Y8 (TrEMBL: Podospora anserina) DNA centromeric region
            sequence from BAC DP26B06, DP34F04, DP16D11, DP09G08,
            DP35C12 of chromosome 5 of Podospora anserina.
          Length = 516

 Score =  164 bits (416), Expect = 2e-39
 Identities = 111/378 (29%), Positives = 169/378 (44%), Gaps = 45/378 (11%)
 Frame = +1

Query: 262  DNSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVT-NKGRSRGMATVEFNSKDDVREAIN 438
            D  +++GN+ +D     ++D  ++   ++ AD++    G S+G   VE+ +++  + A+ 
Sbjct: 124  DRRVYVGNLSYDVKWHHLKDFMRQAGEVLYADVLLLPNGMSKGCGIVEYATREQAQNAVA 183

Query: 439  KFDRYEYRGREIFVRQDYPPPEKKHDYGPPRGR---GTTYDSRSGSRDRYNDRYQSSRRN 609
                    GR ++ R+  P       +GPP G    G       G    Y   +      
Sbjct: 184  TLSNQNLMGRLVYDREAEPR------FGPPGGGARGGFGGPVGPGGGAPYGGGFNPGMGG 237

Query: 610  DNYAPPAPPSKPGTEVFIGNLPFSVNWQALKDLMRDA---GEVIRADVRLDNYGNSRGFG 780
               AP         ++F+ NLPF++ WQ LKDL R +   G VIRADV L   G  +G G
Sbjct: 238  G--APGGGAPGGARQIFVSNLPFNIGWQDLKDLFRQSARTGGVIRADVHLGPDGRPKGSG 295

Query: 781  TVVFNTEEEAAKAVEMFQGYEIEGRKLDXXXXXXXXXXXX-------------------- 900
             VVF + ++A  A++ F GY+ +GR ++                                
Sbjct: 296  IVVFESPDDARNAIQQFNGYDWQGRVIEVREDRFANAGMGAGGYGGRGGFGGRGGFGGGF 355

Query: 901  ----------------YERDSYRSSDTTEKS--SYGDRSKSAVANKNSEFTDGVTADGEK 1026
                            Y R  Y           S+G       +   + FTD  TA  EK
Sbjct: 356  GGRGGFGGRGGFGGGGYGRGGYGGGPGGGPGGPSFGGPPGGDASVPPNPFTDNATAGTEK 415

Query: 1027 SDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQYADDGRPSGNAVVQFEIADLAENAIL 1206
            ++ IYV NLP++T +DDL +LF T+G+  +AEIQY   GR  G+ VV+F+ AD AE AI 
Sbjct: 416  NEIIYVRNLPWSTSNDDLVELFSTIGKVEQAEIQYEPSGRSRGSGVVRFDNADTAETAIN 475

Query: 1207 QLNNYLYGGRNLQISYAK 1260
            +   Y YGGR L +SY K
Sbjct: 476  KFQGYQYGGRPLGLSYVK 493



 Score = 99.8 bits (247), Expect = 6e-20
 Identities = 86/301 (28%), Positives = 120/301 (39%), Gaps = 43/301 (14%)
 Frame = +1

Query: 475  FVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSRDRYNDRYQSSRR-------------NDN 615
            F R+    P +     P  G   +Y  R  SR R+  R +S                N+N
Sbjct: 37   FGRERSRSPRRGRSRSPNNGTRRSYSPRDRSRSRHRRRSRSPMTGQGASAGGSGQGYNNN 96

Query: 616  YAPPAP-----------------PSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADV 744
             AP                     S+    V++GNL + V W  LKD MR AGEV+ ADV
Sbjct: 97   GAPHRSFEDRAVHRENVMNNIRESSQQDRRVYVGNLSYDVKWHHLKDFMRQAGEVLYADV 156

Query: 745  RLDNYGNSRGFGTVVFNTEEEAAKAVEMFQGYEIEGRKLDXXXXXXXXXXXXYERDS--- 915
             L   G S+G G V + T E+A  AV       + GR +             Y+R++   
Sbjct: 157  LLLPNGMSKGCGIVEYATREQAQNAVATLSNQNLMGRLV-------------YDREAEPR 203

Query: 916  YRSSDTTEKSSYGDR-SKSAVANKNSEFTDGVTADGEKSDT------IYVANLPFATQDD 1074
            +       +  +G        A     F  G+               I+V+NLPF     
Sbjct: 204  FGPPGGGARGGFGGPVGPGGGAPYGGGFNPGMGGGAPGGGAPGGARQIFVSNLPFNIGWQ 263

Query: 1075 DLYDLFETVGRT---TKAEIQYADDGRPSGNAVVQFEIADLAENAILQLNNYLYGGRNLQ 1245
            DL DLF    RT    +A++    DGRP G+ +V FE  D A NAI Q N Y + GR ++
Sbjct: 264  DLKDLFRQSARTGGVIRADVHLGPDGRPKGSGIVVFESPDDARNAIQQFNGYDWQGRVIE 323

Query: 1246 I 1248
            +
Sbjct: 324  V 324



 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 27/77 (35%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
 Frame = +1

Query: 247 TERNFDNSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTN-KGRSRGMATVEFNSKDDV 423
           TE+N    I++ N+P+  ++ D+ ++F     + +A+I     GRSRG   V F++ D  
Sbjct: 413 TEKN--EIIYVRNLPWSTSNDDLVELFSTIGKVEQAEIQYEPSGRSRGSGVVRFDNADTA 470

Query: 424 REAINKFDRYEYRGREI 474
             AINKF  Y+Y GR +
Sbjct: 471 ETAINKFQGYQYGGRPL 487


>Q8J0M5|GBP2|Q8J0M5 (TrEMBL: Saccharomyces bayanus (Yeast)
            (Saccharomyces uvarum)) GBP2p (Fragment).
          Length = 204

 Score =  153 bits (386), Expect = 5e-36
 Identities = 81/205 (39%), Positives = 124/205 (60%), Gaps = 7/205 (3%)
 Frame = +1

Query: 670  LPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFGTVVFNTEEEAAKAVEMFQGYEIE 849
            LP+S+NWQ+LKD+ ++ G V+RADV LD  G SRGFG+V++ T++E  +A++ F G E+E
Sbjct: 1    LPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTKDEMMRAIDTFNGMEVE 60

Query: 850  GRKLDXXXXXXXXXXXXYERDSYRSSDTTEKSSYGDRSKSAVANKN-------SEFTDGV 1008
            GR L+             + D Y       +    D     V +         ++FT+GV
Sbjct: 61   GRVLEVREGRFNNRRE--DNDRYNQDPQDPEEDIRDAEPDLVQDITVHIDETATKFTEGV 118

Query: 1009 TADGEKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQYADDGRPSGNAVVQFEIADL 1188
               G+++  I+ +NLPF+T   DL+DLF  +G+   AE++  ++G+P+G AVV++E    
Sbjct: 119  NPGGDRNCFIHCSNLPFSTARSDLFDLFGPIGKINNAELKPQENGQPTGVAVVEYENLVD 178

Query: 1189 AENAILQLNNYLYGGRNLQISYAKR 1263
            A+  I +LNNY YGG +LQISYAKR
Sbjct: 179  ADFCIQKLNNYNYGGCSLQISYAKR 203



 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 51/214 (23%), Positives = 86/214 (40%), Gaps = 22/214 (10%)
 Frame = +1

Query: 286 IPFDCTSRDIEDIFKKDFSIVRADIVTN-KGRSRGMATVEFNSKDDVREAINKFDRYEYR 462
           +P+    + ++D+FK+   ++RAD+  +  G SRG  +V + +KD++  AI+ F+  E  
Sbjct: 1   LPYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTKDEMMRAIDTFNGMEVE 60

Query: 463 GREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSRDRYNDRYQSSRRNDNYAPP----- 627
           GR + VR+               GR   +++R    DRYN   Q    +   A P     
Sbjct: 61  GRVLEVRE---------------GR---FNNRREDNDRYNQDPQDPEEDIRDAEPDLVQD 102

Query: 628 ------------APPSKPGTE----VFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNY 759
                            PG +    +   NLPFS     L DL    G++  A+++    
Sbjct: 103 ITVHIDETATKFTEGVNPGGDRNCFIHCSNLPFSTARSDLFDLFGPIGKINNAELKPQEN 162

Query: 760 GNSRGFGTVVFNTEEEAAKAVEMFQGYEIEGRKL 861
           G   G   V +    +A   ++    Y   G  L
Sbjct: 163 GQPTGVAVVEYENLVDADFCIQKLNNYNYGGCSL 196


>Q9P3U1|SPAC328.05|Q9P3U1 (TrEMBL: Schizosaccharomyces pombe (Fission
            yeast)) Protein with 3 RNA binding domains, yeast hrb1
            homologue.
          Length = 434

 Score =  150 bits (380), Expect = 2e-35
 Identities = 99/348 (28%), Positives = 160/348 (45%), Gaps = 16/348 (4%)
 Frame = +1

Query: 262  DNSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVT-NKGRSRGMATVEFNSKDDVREAIN 438
            +  +++GN+ +     ++++   +  +++  +I+    G S+G A +E+++ ++ R AI 
Sbjct: 65   ERRVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIK 124

Query: 439  KFDRYEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSRDRYNDRYQSSRRNDNY 618
                 ++ GR +++R+D                              N R+ SS  + + 
Sbjct: 125  TLSNQKFMGRLVYIRED---------------------------REQNARFGSSSVSPSA 157

Query: 619  APPAPPSKPGTEVFIGN---------------LPFSVNWQALKDLMRDAGEVIRADVRLD 753
            +     S+P  ++F+GN               LP++V WQ LKDL R AG VIRAD++++
Sbjct: 158  SSNGKDSEPDRQLFVGNVSSISNPLYSFPRTLLPYNVRWQDLKDLFRQAGSVIRADIQMN 217

Query: 754  NYGNSRGFGTVVFNTEEEAAKAVEMFQGYEIEGRKLDXXXXXXXXXXXXYERDSYRSSDT 933
              G SRG G VV ++ +EA  A++M    +  GR L+                       
Sbjct: 218  QEGRSRGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEV---------------------- 255

Query: 934  TEKSSYGDRSKSAVANKNSEFTDGVTADGEKSDTIYVANLPFATQDDDLYDLFETVGRTT 1113
                    R      +K  +        G  SD IYV NLP+AT D +L DLF  +G   
Sbjct: 256  --------RLDRFAHHKIEDLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVI 307

Query: 1114 KAEIQYADDGRPSGNAVVQFEIADLAENAILQLNNYLYGGRNLQISYA 1257
            +A I Y   GR  G  VVQFE  + A ++I +LN Y YGGR LQ+SYA
Sbjct: 308  RARIAYEPTGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYA 355



 Score = 75.5 bits (184), Expect = 1e-12
 Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 15/223 (6%)
 Frame = +1

Query: 655  VFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFGTVVFNTEEEAAKAVEMFQ 834
            V++GNL + V W  LK+ M   G V+  ++     G S+G   + ++T EEA  A++   
Sbjct: 68   VYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTLS 127

Query: 835  GYEIEGRKLDXXXXXXXXXXXXYERDSYRSSDTTEKSSYGDRSKSAVANKNSEFTDGVTA 1014
              +  GR +                  Y   D  + + +G  S S  A+ N +       
Sbjct: 128  NQKFMGRLV------------------YIREDREQNARFGSSSVSPSASSNGK------- 162

Query: 1015 DGEKSDTIYVAN---------------LPFATQDDDLYDLFETVGRTTKAEIQYADDGRP 1149
            D E    ++V N               LP+  +  DL DLF   G   +A+IQ   +GR 
Sbjct: 163  DSEPDRQLFVGNVSSISNPLYSFPRTLLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRS 222

Query: 1150 SGNAVVQFEIADLAENAILQLNNYLYGGRNLQISYAKRPEEKV 1278
             G  +V       A +AI  L+N  + GR L++   +    K+
Sbjct: 223  RGIGIVVMSSMKEAMHAIQMLHNTDFMGRTLEVRLDRFAHHKI 265



 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 26/84 (30%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
 Frame = +1

Query: 226 DADYRSKTERNFDNSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK-GRSRGMATVE 402
           D  Y +       + I++GN+P+  + R++ D+F    S++RA I     GRS+G   V+
Sbjct: 267 DLVYHAYPHGPCSDCIYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEPTGRSKGFGVVQ 326

Query: 403 FNSKDDVREAINKFDRYEYRGREI 474
           F +++D   +I K + Y Y GR +
Sbjct: 327 FENENDAASSIEKLNGYRYGGRPL 350


>Q8J0M9|GBP2|Q8J0M9 (TrEMBL: Saccharomyces paradoxus (Yeast)) GBP2p
            (Fragment).
          Length = 182

 Score =  124 bits (311), Expect = 2e-27
 Identities = 62/171 (36%), Positives = 103/171 (60%), Gaps = 3/171 (1%)
 Frame = +1

Query: 673  PFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFGTVVFNTEEEAAKAVEMFQGYEIEG 852
            P+S+NWQ+LKD+ ++ G V+RADV LD  G SRGFG+V++ T++E  +A++ F G E+EG
Sbjct: 1    PYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTKDEMIRAIDTFNGVEVEG 60

Query: 853  RKLDXXXXXXXXXXXXYERDSYRSSDTTEKSSYGDRSKSA---VANKNSEFTDGVTADGE 1023
            R L+               +  R      + +  D  +     +    ++FT+GV   G+
Sbjct: 61   RVLEVREGRFNKRNNNDRYNQGREDLGDTRDAEPDLVQDVTVQIDETAAKFTEGVNPGGD 120

Query: 1024 KSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQYADDGRPSGNAVVQFE 1176
            ++  IY +NLPF+T   DL+DLF  +G+   AE++  ++G+P+G AVV++E
Sbjct: 121  RNCFIYCSNLPFSTARSDLFDLFGPIGKINNAELKPQENGQPTGVAVVEYE 171



 Score = 56.2 bits (134), Expect = 8e-07
 Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 6/180 (3%)
 Frame = +1

Query: 289 PFDCTSRDIEDIFKKDFSIVRADIVTN-KGRSRGMATVEFNSKDDVREAINKFDRYEYRG 465
           P+    + ++D+FK+   ++RAD+  +  G SRG  +V + +KD++  AI+ F+  E  G
Sbjct: 1   PYSMNWQSLKDMFKECGHVLRADVELDFNGFSRGFGSVIYPTKDEMIRAIDTFNGVEVEG 60

Query: 466 REIFVRQDYPPPEKKHD-YGPPRGRGTTYDSRSGSRDRYNDRYQSSRRNDNYAPPAPPSK 642
           R + VR+        +D Y   +GR    D+R    D   D   + + ++  A       
Sbjct: 61  RVLEVREGRFNKRNNNDRYN--QGREDLGDTRDAEPDLVQD--VTVQIDETAAKFTEGVN 116

Query: 643 PGTE----VFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFGTVVFNTEEEA 810
           PG +    ++  NLPFS     L DL    G++  A+++    G   G   V +    +A
Sbjct: 117 PGGDRNCFIYCSNLPFSTARSDLFDLFGPIGKINNAELKPQENGQPTGVAVVEYENLVDA 176


>Q08935||ROC1_NICSY (SP: Nicotiana sylvestris (Wood tobacco)) 29 kDa
           ribonucleoprotein A, chloroplast precursor (CP29A).
          Length = 273

 Score =  103 bits (258), Expect = 3e-21
 Identities = 71/217 (32%), Positives = 110/217 (50%), Gaps = 5/217 (2%)
 Frame = +1

Query: 226 DADYRSKTERNF--DNSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK--GRSRGMA 393
           D D   + ERNF  D  IF+GN+PF   S  + ++F++  ++   +++ +K  GRSRG  
Sbjct: 72  DGDDGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFG 131

Query: 394 TVEFNSKDDVREAINKFDRYEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSRD 573
            V  +SK++V  A  +F+ YE  GR + V    PPPEK+ +             R GSR 
Sbjct: 132 FVTMSSKEEVEAACQQFNGYELDGRALRVNSG-PPPEKREN----------SSFRGGSRG 180

Query: 574 RYNDRYQSSRRNDNYAPPAPPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLD 753
                + SS R                V++GNL + V+  AL+ L  + G+V+ A V  D
Sbjct: 181 --GGSFDSSNR----------------VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYD 222

Query: 754 -NYGNSRGFGTVVFNTEEEAAKAVEMFQGYEIEGRKL 861
            + G SRGFG V +++ EE   A+E   G ++ GR +
Sbjct: 223 RDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAI 259



 Score = 93.2 bits (230), Expect = 6e-18
 Identities = 69/216 (31%), Positives = 97/216 (44%), Gaps = 5/216 (2%)
 Frame = +1

Query: 643  PGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNY-GNSRGFGTVVFNTEEEAAKA 819
            P  ++F+GNLPFS +  AL +L   AG V   +V  D   G SRGFG V  +++EE   A
Sbjct: 85   PDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAA 144

Query: 820  VEMFQGYEIEGRKLDXXXXXXXXXXXXYERDSYRSSDTTEKSSYGDRSKSAVANKNSEFT 999
             + F GYE++GR L                    S    EK             +NS F 
Sbjct: 145  CQQFNGYELDGRAL-----------------RVNSGPPPEK------------RENSSFR 175

Query: 1000 DGVTADG--EKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQY-ADDGRPSGNAVVQ 1170
             G    G  + S+ +YV NL +    D L  LF   G+   A++ Y  D GR  G   V 
Sbjct: 176  GGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVT 235

Query: 1171 FEIADLAENAILQLNNYLYGGRNLQISYAK-RPEEK 1275
            +  A+   NAI  L+     GR +++S A+ RP  +
Sbjct: 236  YSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRR 271


>Q39568|GBP1|Q39568 (TrEMBL: Chlamydomonas reinhardtii) Gbp1p.
          Length = 221

 Score =  102 bits (254), Expect = 1e-20
 Identities = 65/200 (32%), Positives = 101/200 (50%), Gaps = 4/200 (2%)
 Frame = +1

Query: 274 FIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK-GRSRGMATVEFNSKDDVREAINKFDR 450
           F+GN+ +  + +D++D F++  ++V  +++ +  GRS+G   VEF S ++   AI   + 
Sbjct: 14  FVGNLAWKTSWQDLKDKFRECGNVVYTNVMRDDDGRSKGWGIVEFESPEEALHAIQTLNG 73

Query: 451 YEYRGREIFVRQDYPPPEKKHDYGPPRGRG--TTYDSRSGSRDRYNDRYQSSRRNDNY-A 621
            E  GR I VR+D    + K   G P          +R   R   N    + R      A
Sbjct: 74  AELGGRRILVREDREDRDVKQADGAPGAPAERAPRPARGAGRGAANGGRGAGRGGRGAGA 133

Query: 622 PPAPPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFGTVVFNTE 801
           P A     G +V +  +P++  W+ LKD+  + G V RADV     G SRG+GTV F T+
Sbjct: 134 PEATGESSGLQVVVQGIPWAYTWRELKDMFAEVGGVDRADVVTGYDGRSRGYGTVKFTTK 193

Query: 802 EEAAKAVEMFQGYEIEGRKL 861
           E A  AV  +   E+EGR+L
Sbjct: 194 EAAEAAVARYHESELEGRRL 213



 Score = 88.6 bits (218), Expect = 1e-16
 Identities = 58/206 (28%), Positives = 92/206 (44%), Gaps = 5/206 (2%)
 Frame = +1

Query: 646  GTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFGTVVFNTEEEAAKAVE 825
            G   F+GNL +  +WQ LKD  R+ G V+  +V  D+ G S+G+G V F + EEA  A++
Sbjct: 10   GKRCFVGNLAWKTSWQDLKDKFRECGNVVYTNVMRDDDGRSKGWGIVEFESPEEALHAIQ 69

Query: 826  MFQGYEIEGRKL----DXXXXXXXXXXXXYERDSYRSSDTTEKSSYGDRSKSAVANKNSE 993
               G E+ GR++    D                + R+      +  G  +    A +   
Sbjct: 70   TLNGAELGGRRILVREDREDRDVKQADGAPGAPAERAPRPARGAGRGAANGGRGAGRGGR 129

Query: 994  FTDGVTADGEKSD-TIYVANLPFATQDDDLYDLFETVGRTTKAEIQYADDGRPSGNAVVQ 1170
                  A GE S   + V  +P+A    +L D+F  VG   +A++    DGR  G   V+
Sbjct: 130  GAGAPEATGESSGLQVVVQGIPWAYTWRELKDMFAEVGGVDRADVVTGYDGRSRGYGTVK 189

Query: 1171 FEIADLAENAILQLNNYLYGGRNLQI 1248
            F   + AE A+ + +     GR L +
Sbjct: 190  FTTKEAAEAAVARYHESELEGRRLAV 215



 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
 Frame = +1

Query: 271 IFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTN-KGRSRGMATVEFNSKDDVREAINKFD 447
           + +  IP+  T R+++D+F +   + RAD+VT   GRSRG  TV+F +K+    A+ ++ 
Sbjct: 145 VVVQGIPWAYTWRELKDMFAEVGGVDRADVVTGYDGRSRGYGTVKFTTKEAAEAAVARYH 204

Query: 448 RYEYRGREIFV 480
             E  GR + V
Sbjct: 205 ESELEGRRLAV 215


>P49313||ROC1_NICPL (SP: Nicotiana plumbaginifolia (Leadwort-leaved
           tobacco)) 30 kDa ribonucleoprotein, chloroplast
           precursor (CP-RBP30).
          Length = 279

 Score =  101 bits (251), Expect = 2e-20
 Identities = 69/217 (31%), Positives = 108/217 (49%), Gaps = 5/217 (2%)
 Frame = +1

Query: 226 DADYRSKTERNF--DNSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK--GRSRGMA 393
           D D   + ERNF  D  IF+GN+ F   S  + ++F++  ++   +++ +K  GRSRG  
Sbjct: 72  DGDEGVEEERNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFG 131

Query: 394 TVEFNSKDDVREAINKFDRYEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSRD 573
            V  +SK++V  A  +F+ YE  GR + V    PPPEK+ +            SR G   
Sbjct: 132 FVTMSSKEEVEAACQQFNGYELDGRALRVNSG-PPPEKRENSSFRENSSFRGGSRGGG-- 188

Query: 574 RYNDRYQSSRRNDNYAPPAPPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLD 753
                + SS R                V++GNL + V+  AL+ L  + G+V+ A V  D
Sbjct: 189 ----SFDSSNR----------------VYVGNLAWGVDQDALETLFSEQGKVVDAKVVYD 228

Query: 754 -NYGNSRGFGTVVFNTEEEAAKAVEMFQGYEIEGRKL 861
            + G SRGFG V +++ EE   A+E   G ++ GR +
Sbjct: 229 RDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAI 265



 Score = 92.4 bits (228), Expect = 1e-17
 Identities = 69/216 (31%), Positives = 100/216 (46%), Gaps = 5/216 (2%)
 Frame = +1

Query: 643  PGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNY-GNSRGFGTVVFNTEEEAAKA 819
            P  ++F+GNL FS +  AL +L   AG V   +V  D   G SRGFG V  +++EE   A
Sbjct: 85   PDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAA 144

Query: 820  VEMFQGYEIEGRKLDXXXXXXXXXXXXYERDSYRSSDTTEKSSYGDRSKSAVANKNSEFT 999
             + F GYE++GR L                +S    +  E SS+          +NS F 
Sbjct: 145  CQQFNGYELDGRAL--------------RVNSGPPPEKRENSSF---------RENSSFR 181

Query: 1000 DGVTADG--EKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQY-ADDGRPSGNAVVQ 1170
             G    G  + S+ +YV NL +    D L  LF   G+   A++ Y  D GR  G   V 
Sbjct: 182  GGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVT 241

Query: 1171 FEIADLAENAILQLNNYLYGGRNLQISYAK-RPEEK 1275
            +  A+   NAI  L+     GR +++S A+ RP  +
Sbjct: 242  YSSAEEVNNAIESLDGVDLNGRAIRVSPAEARPPRR 277


>Q876Z0||Q876Z0 (TrEMBL: Ashbya gossypii (Yeast) (Eremothecium
            gossypii)) GBP2 (Fragment).
          Length = 177

 Score =  100 bits (248), Expect = 5e-20
 Identities = 58/172 (33%), Positives = 86/172 (50%), Gaps = 25/172 (14%)
 Frame = +1

Query: 817  AVEMFQGYEIEGRKLDXXXXXXXXXXXXYERDSY--------------RSSDTTEKSSYG 954
            A+E + GYE+EGR L+               DSY              R ++   +  + 
Sbjct: 3    AIERWNGYELEGRILEVREGKGTDVGSAGRGDSYVPKQIPSYDYDGEYRGTEVRAELPHS 62

Query: 955  DRSKSAVANKNS-----------EFTDGVTADGEKSDTIYVANLPFATQDDDLYDLFETV 1101
            + +  +V+ K S           EFT      G K+  IY  N+P AT + DLYDLFET 
Sbjct: 63   ENASVSVSGKASPEYEQYTPSDVEFTSKAAPGGAKNRIIYCENMPLATAESDLYDLFETA 122

Query: 1102 GRTTKAEIQYADDGRPSGNAVVQFEIADLAENAILQLNNYLYGGRNLQISYA 1257
            G+  +A +QY  +G P+G++V +FE    A+  I +LNNY YGG +L++SYA
Sbjct: 123  GKVLRANLQYDSEGNPTGSSVCEFETVADAQECIERLNNYHYGGCDLKMSYA 174



 Score = 39.7 bits (91), Expect = 0.079
 Identities = 22/87 (25%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = +1

Query: 223 SDADYRSKTERNFDNS--IFIGNIPFDCTSRDIEDIFKKDFSIVRADI-VTNKGRSRGMA 393
           SD ++ SK       +  I+  N+P      D+ D+F+    ++RA++   ++G   G +
Sbjct: 83  SDVEFTSKAAPGGAKNRIIYCENMPLATAESDLYDLFETAGKVLRANLQYDSEGNPTGSS 142

Query: 394 TVEFNSKDDVREAINKFDRYEYRGREI 474
             EF +  D +E I + + Y Y G ++
Sbjct: 143 VCEFETVADAQECIERLNNYHYGGCDL 169


>Q43349|RBP29|ROC2_ARATH (SP: Arabidopsis thaliana (Mouse-ear
           cress)) 29 kDa ribonucleoprotein, chloroplast precursor
           (RNA-binding protein cp29).
          Length = 342

 Score = 99.8 bits (247), Expect = 6e-20
 Identities = 69/247 (27%), Positives = 119/247 (48%), Gaps = 34/247 (13%)
 Frame = +1

Query: 223 SDADYRSKTERNF---DNSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK--GRSRG 387
           +D D  +  ERN    D  +F+GN+ F+  S  +  +F+   ++   +++ +K  GRSRG
Sbjct: 82  ADGDDSAPVERNSFSPDLKLFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRG 141

Query: 388 MATVEFNSKDDVREAINKFDRYEYRGREIFVRQDYPPPEKKHD---------YGPPRG-- 534
              V  ++  +V  A  +F+ YE+ GR + V    PPP+++           YG  RG  
Sbjct: 142 FGFVTMSTAAEVEAAAQQFNGYEFEGRPLRVNAGPPPPKREESFSRGPRSGGYGSERGGG 201

Query: 535 ----RGTTYDSRSG-----------SRDRYNDRYQSSRRND--NYAPPAPPSKPGTEVFI 663
               RG  Y S  G              R    Y  S+R+   + +     S  G  +++
Sbjct: 202 YGSERGGGYGSERGGGYGSERGGGYGSQRSGGGYGGSQRSSYGSGSGSGSGSGSGNRLYV 261

Query: 664 GNLPFSVNWQALKDLMRDAGEVIRADVRLD-NYGNSRGFGTVVFNTEEEAAKAVEMFQGY 840
           GNL + V+  AL++L  + G+V+ A V  D + G S+GFG V  ++ +E  KA+    G 
Sbjct: 262 GNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAINSLNGA 321

Query: 841 EIEGRKL 861
           +++GR++
Sbjct: 322 DLDGRQI 328



 Score = 45.8 bits (107), Expect = 0.001
 Identities = 25/93 (26%), Positives = 50/93 (53%), Gaps = 2/93 (2%)
 Frame = +1

Query: 265 NSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK--GRSRGMATVEFNSKDDVREAIN 438
           N +++GN+ +      +E++F +   +V A ++ ++  GRS+G   V  +S  +V++AIN
Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316

Query: 439 KFDRYEYRGREIFVRQDYPPPEKKHDYGPPRGR 537
             +  +  GR+I V         + +  PPRG+
Sbjct: 317 SLNGADLDGRQIRV--------SEAEARPPRGQ 341


>Q8QZZ1|MYEF2|Q8QZZ1 (TrEMBL: Mus musculus (Mouse)) Myelin gene
           expression factor.
          Length = 530

 Score = 97.8 bits (242), Expect = 2e-19
 Identities = 60/199 (30%), Positives = 103/199 (51%), Gaps = 8/199 (4%)
 Frame = +1

Query: 265 NSIFIGNIPFDCTSRDIEDIFKKDFS-IVRADIVTN-KGRSRGMATVEFNSKDDVREAIN 438
           N +FI NIP+D   + I+D+ ++    +   ++  + +G+SRG   VEF  ++ V++A+ 
Sbjct: 47  NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 106

Query: 439 KFDRYEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSR--DRYNDRYQSSRRND 612
             ++Y+  GR + +++D   P+ ++     +  GT++     S       +   S   N 
Sbjct: 107 TMNKYDLSGRPLNIKED---PDGENARRALQRTGTSFQGSHASDVGSGLVNLPPSILNNP 163

Query: 613 NYAPPA----PPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFG 780
           N  P         + G+ +F+ NL F V W+ LK++   AG V RAD++ D  G SRG G
Sbjct: 164 NIPPEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMG 223

Query: 781 TVVFNTEEEAAKAVEMFQG 837
           TV F    EA +A+ MF G
Sbjct: 224 TVTFEQAIEAVQAISMFNG 242



 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 65/208 (31%), Positives = 94/208 (45%), Gaps = 10/208 (4%)
 Frame = +1

Query: 655  VFIGNLPFSVNWQALKDLMRD-AGEVIRADVRLDNYGNSRGFGTVVFNTEEEAAKAVEMF 831
            VFI N+P+ + WQA+KDLMR+  GEV   ++  D  G SRG G V F  EE   KA+E  
Sbjct: 49   VFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETM 108

Query: 832  QGYEIEGRKLDXXXXXXXXXXXXYERDSYRSSDTTEKSSYGDRSKSAVAN------KNSE 993
              Y++ GR L+              R + + + T+ + S+     S + N       N  
Sbjct: 109  NKYDLSGRPLNIKEDPDGENA----RRALQRTGTSFQGSHASDVGSGLVNLPPSILNNPN 164

Query: 994  FTDGVTAD---GEKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQYADDGRPSGNAV 1164
                V ++   G    TI+VANL F      L ++F   G   +A+I+   DG+  G   
Sbjct: 165  IPPEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGT 224

Query: 1165 VQFEIADLAENAILQLNNYLYGGRNLQI 1248
            V FE A  A  AI   N      R + +
Sbjct: 225  VTFEQAIEAVQAISMFNGQFLFDRPMHV 252



 Score = 67.4 bits (163), Expect = 4e-10
 Identities = 30/73 (41%), Positives = 47/73 (64%)
 Frame = +1

Query: 646 GTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFGTVVFNTEEEAAKAVE 825
           G ++F+ NLPF + WQ LK+     G V+ A+++++N G S+G GTV F + E A KA  
Sbjct: 452 GNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN-GKSKGCGTVRFESAESAEKACR 510

Query: 826 MFQGYEIEGRKLD 864
           +  G +I GR++D
Sbjct: 511 IMNGIKISGREID 523



 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 26/75 (34%), Positives = 42/75 (56%)
 Frame = +1

Query: 265 NSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNKGRSRGMATVEFNSKDDVREAINKF 444
           N IF+ N+PFD T + +++ F +   ++ A+I    G+S+G  TV F S +   +A    
Sbjct: 453 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESAESAEKACRIM 512

Query: 445 DRYEYRGREIFVRQD 489
           +  +  GREI VR D
Sbjct: 513 NGIKISGREIDVRLD 527



 Score = 44.3 bits (103), Expect = 0.003
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
 Frame = +1

Query: 265 NSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK-GRSRGMATVEFNSKDDVREAINK 441
           ++IF+ N+ F    + ++++F    ++ RADI  +K G+SRGM TV F    +  +AI+ 
Sbjct: 180 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 239

Query: 442 FDRYEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSRDR 576
           F+     G+ +F   D P   K  D   P     ++DS++    R
Sbjct: 240 FN-----GQFLF---DRPMHVKMDDKSVPHEDYRSHDSKTSQLPR 276



 Score = 43.9 bits (102), Expect = 0.004
 Identities = 26/77 (33%), Positives = 38/77 (49%)
 Frame = +1

Query: 1018 GEKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQYADDGRPSGNAVVQFEIADLAEN 1197
            G K + I+V NLPF      L + F   G    AEI+  ++G+  G   V+FE A+ AE 
Sbjct: 449  GSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIK-MENGKSKGCGTVRFESAESAEK 507

Query: 1198 AILQLNNYLYGGRNLQI 1248
            A   +N     GR + +
Sbjct: 508  ACRIMNGIKISGREIDV 524


>Q8C854|MYEF2|Q8C854 (TrEMBL: Mus musculus (Mouse)) Myelin basic
           protein expression factor 2.
          Length = 591

 Score = 97.8 bits (242), Expect = 2e-19
 Identities = 60/199 (30%), Positives = 103/199 (51%), Gaps = 8/199 (4%)
 Frame = +1

Query: 265 NSIFIGNIPFDCTSRDIEDIFKKDFS-IVRADIVTN-KGRSRGMATVEFNSKDDVREAIN 438
           N +FI NIP+D   + I+D+ ++    +   ++  + +G+SRG   VEF  ++ V++A+ 
Sbjct: 91  NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 150

Query: 439 KFDRYEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSR--DRYNDRYQSSRRND 612
             ++Y+  GR + +++D   P+ ++     +  GT++     S       +   S   N 
Sbjct: 151 TMNKYDLSGRPLNIKED---PDGENARRALQRTGTSFQGSHASDVGSGLVNLPPSILNNP 207

Query: 613 NYAPPA----PPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFG 780
           N  P         + G+ +F+ NL F V W+ LK++   AG V RAD++ D  G SRG G
Sbjct: 208 NIPPEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMG 267

Query: 781 TVVFNTEEEAAKAVEMFQG 837
           TV F    EA +A+ MF G
Sbjct: 268 TVTFEQAIEAVQAISMFNG 286



 Score = 91.7 bits (226), Expect = 2e-17
 Identities = 79/280 (28%), Positives = 119/280 (42%), Gaps = 24/280 (8%)
 Frame = +1

Query: 481  RQDYPPPEKKHDYGPPRG--RGTTYDSRSGSRDRYNDRYQSSRRN---DNYAPPAPPSKP 645
            R+D  P E +    PPR    G   ++    ++  +D  + S  N   + + P +     
Sbjct: 24   RRDTHPGEPEK---PPRSSANGVKMENDESVKEEKSDLKEKSTGNKKANRFHPYSKDKNS 80

Query: 646  GT---------EVFIGNLPFSVNWQALKDLMRD-AGEVIRADVRLDNYGNSRGFGTVVFN 795
            GT          VFI N+P+ + WQA+KDLMR+  GEV   ++  D  G SRG G V F 
Sbjct: 81   GTGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFK 140

Query: 796  TEEEAAKAVEMFQGYEIEGRKLDXXXXXXXXXXXXYERDSYRSSDTTEKSSYGDRSKSAV 975
             EE   KA+E    Y++ GR L+              R + + + T+ + S+     S +
Sbjct: 141  DEEFVKKALETMNKYDLSGRPLNIKEDPDGENA----RRALQRTGTSFQGSHASDVGSGL 196

Query: 976  AN------KNSEFTDGVTAD---GEKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQ 1128
             N       N      V ++   G    TI+VANL F      L ++F   G   +A+I+
Sbjct: 197  VNLPPSILNNPNIPPEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIK 256

Query: 1129 YADDGRPSGNAVVQFEIADLAENAILQLNNYLYGGRNLQI 1248
               DG+  G   V FE A  A  AI   N      R + +
Sbjct: 257  EDKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHV 296



 Score = 67.4 bits (163), Expect = 4e-10
 Identities = 30/73 (41%), Positives = 47/73 (64%)
 Frame = +1

Query: 646 GTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFGTVVFNTEEEAAKAVE 825
           G ++F+ NLPF + WQ LK+     G V+ A+++++N G S+G GTV F + E A KA  
Sbjct: 513 GNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN-GKSKGCGTVRFESAESAEKACR 571

Query: 826 MFQGYEIEGRKLD 864
           +  G +I GR++D
Sbjct: 572 IMNGIKISGREID 584



 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 26/75 (34%), Positives = 42/75 (56%)
 Frame = +1

Query: 265 NSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNKGRSRGMATVEFNSKDDVREAINKF 444
           N IF+ N+PFD T + +++ F +   ++ A+I    G+S+G  TV F S +   +A    
Sbjct: 514 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFESAESAEKACRIM 573

Query: 445 DRYEYRGREIFVRQD 489
           +  +  GREI VR D
Sbjct: 574 NGIKISGREIDVRLD 588



 Score = 44.3 bits (103), Expect = 0.003
 Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 1/105 (0%)
 Frame = +1

Query: 265 NSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK-GRSRGMATVEFNSKDDVREAINK 441
           ++IF+ N+ F    + ++++F    ++ RADI  +K G+SRGM TV F    +  +AI+ 
Sbjct: 224 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 283

Query: 442 FDRYEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSRDR 576
           F+     G+ +F   D P   K  D   P     ++DS++    R
Sbjct: 284 FN-----GQFLF---DRPMHVKMDDKSVPHEDYRSHDSKTSQLPR 320



 Score = 43.9 bits (102), Expect = 0.004
 Identities = 26/77 (33%), Positives = 38/77 (49%)
 Frame = +1

Query: 1018 GEKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQYADDGRPSGNAVVQFEIADLAEN 1197
            G K + I+V NLPF      L + F   G    AEI+  ++G+  G   V+FE A+ AE 
Sbjct: 510  GSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIK-MENGKSKGCGTVRFESAESAEK 568

Query: 1198 AILQLNNYLYGGRNLQI 1248
            A   +N     GR + +
Sbjct: 569  ACRIMNGIKISGREIDV 585


>Q8W214||Q8W214 (TrEMBL: Solanum tuberosum (Potato)) Single-stranded
           DNA binding protein precursor.
          Length = 289

 Score = 97.1 bits (240), Expect = 4e-19
 Identities = 61/205 (29%), Positives = 101/205 (49%), Gaps = 3/205 (1%)
 Frame = +1

Query: 256 NFDNSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK--GRSRGMATVEFNSKDDVRE 429
           N D  IF+GN+PF   S  + ++F++   +   +++ +K  GRSRG   V  +SK+ V  
Sbjct: 96  NPDLKIFVGNLPFSVDSAALAELFERAGDVEMVEVIYDKLTGRSRGFGFVTMSSKEAVEA 155

Query: 430 AINKFDRYEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSRDRYNDRYQSSRRN 609
           A  +F+ YE  GR + V     PP++++ +G                   N  YQ  R  
Sbjct: 156 ACQQFNGYEIDGRALRVNSGPAPPKRENSFGD------------------NSSYQGGRGG 197

Query: 610 DNYAPPAPPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLD-NYGNSRGFGTV 786
            +             V++GNL +SV+ Q L+ L  + G+V+ A V  D + G SRGFG V
Sbjct: 198 GS-------MDSSNRVYVGNLAWSVDQQQLETLFSEQGKVVDAKVVYDRDSGRSRGFGFV 250

Query: 787 VFNTEEEAAKAVEMFQGYEIEGRKL 861
            +++ +E   A+E   G ++ GR +
Sbjct: 251 TYSSAKEVNDAIESLDGVDLGGRAI 275



 Score = 93.2 bits (230), Expect = 6e-18
 Identities = 68/217 (31%), Positives = 103/217 (47%), Gaps = 4/217 (1%)
 Frame = +1

Query: 637  SKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNY-GNSRGFGTVVFNTEEEAA 813
            + P  ++F+GNLPFSV+  AL +L   AG+V   +V  D   G SRGFG V  +++E   
Sbjct: 95   ANPDLKIFVGNLPFSVDSAALAELFERAGDVEMVEVIYDKLTGRSRGFGFVTMSSKEAVE 154

Query: 814  KAVEMFQGYEIEGRKLDXXXXXXXXXXXXYERDSYRSSDTTEKSSYGDRSKSAVANKNSE 993
             A + F GYEI+GR L               R +   +    ++S+GD         NS 
Sbjct: 155  AACQQFNGYEIDGRAL---------------RVNSGPAPPKRENSFGD---------NSS 190

Query: 994  FTDGVTADG-EKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQY-ADDGRPSGNAVV 1167
            +  G      + S+ +YV NL ++     L  LF   G+   A++ Y  D GR  G   V
Sbjct: 191  YQGGRGGGSMDSSNRVYVGNLAWSVDQQQLETLFSEQGKVVDAKVVYDRDSGRSRGFGFV 250

Query: 1168 QFEIADLAENAILQLNNYLYGGRNLQISYAK-RPEEK 1275
             +  A    +AI  L+    GGR +++S A+ RP  +
Sbjct: 251  TYSSAKEVNDAIESLDGVDLGGRAIRVSPAEARPPRR 287


>Q08937||ROC2_NICSY (SP: Nicotiana sylvestris (Wood tobacco)) 29 kDa
           ribonucleoprotein B, chloroplast precursor (CP29B).
          Length = 291

 Score = 96.3 bits (238), Expect = 7e-19
 Identities = 62/216 (28%), Positives = 112/216 (51%), Gaps = 4/216 (1%)
 Frame = +1

Query: 226 DADYRSKTERNFDNSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK--GRSRGMATV 399
           D +   +   + D  +F+GN+PF   S  +  +F++  ++   +++ +K  GRSRG   V
Sbjct: 74  DVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFV 133

Query: 400 EFNSKDDVREAINKFDRYEYRGREIFVRQDYPPPEKKH-DYGPPRGRGTTYDSRSGSRDR 576
             ++K++V  A  +F+ YE  GR I V     P ++++  +G  RG  ++Y    G RD 
Sbjct: 134 TMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSY---GGGRDG 190

Query: 577 YNDRYQSSRRNDNYAPPAPPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLD- 753
            N  +  +R   +             V++GNL + V+  ALK+L  + G V+ A V  D 
Sbjct: 191 -NSSFGGARGGRSV-------DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDR 242

Query: 754 NYGNSRGFGTVVFNTEEEAAKAVEMFQGYEIEGRKL 861
           + G SRGFG V +++ +E   A++   G +++GR +
Sbjct: 243 DSGRSRGFGFVTYSSSKEVNDAIDSLNGVDLDGRSI 278



 Score = 89.0 bits (219), Expect = 1e-16
 Identities = 69/214 (32%), Positives = 100/214 (46%), Gaps = 6/214 (2%)
 Frame = +1

Query: 652  EVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNY-GNSRGFGTVVFNTEEEAAKAVEM 828
            ++F+GNLPFSV+  AL  L   AG V   +V  D   G SRGFG V  +T+EE   A + 
Sbjct: 88   KLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEVEAAEQQ 147

Query: 829  FQGYEIEGRKLDXXXXXXXXXXXXYERDSYRSSDTTEKSSYGDRSKSAVANKNSEFTDGV 1008
            F GYEI+GR +                 + R + +      G+ S     + NS F  G 
Sbjct: 148  FNGYEIDGRAIRVNAG---------PAPAKRENSSFGGGRGGNSSYGGGRDGNSSF--GG 196

Query: 1009 TADG---EKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQY-ADDGRPSGNAVVQFE 1176
               G   + S+ +YV NL +   D  L +LF   G    A++ Y  D GR  G   V + 
Sbjct: 197  ARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYS 256

Query: 1177 IADLAENAILQLNNYLYGGRNLQISYA-KRPEEK 1275
             +    +AI  LN     GR++++S A +RP  +
Sbjct: 257  SSKEVNDAIDSLNGVDLDGRSIRVSAAEERPRRQ 290


>Q9H922||Q9H922 (TrEMBL: Homo sapiens (Human)) Hypothetical protein
           FLJ13071.
          Length = 576

 Score = 95.9 bits (237), Expect = 9e-19
 Identities = 64/202 (31%), Positives = 102/202 (50%), Gaps = 11/202 (5%)
 Frame = +1

Query: 265 NSIFIGNIPFDCTSRDIEDIFKKDFS-IVRADIVTN-KGRSRGMATVEFNSKDDVREAIN 438
           N +FI NIP+D   + I+D+ ++    +   ++  + +G+SRG   VEF  ++ V++A+ 
Sbjct: 100 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 159

Query: 439 KFDRYEYRGREIFVRQDYPPPEKKHDYGPPRGR----GTTYDSRSGSRDRYNDRYQSSRR 606
             ++Y+  GR + +++D P  E         G     G   D  SG  +        S  
Sbjct: 160 TMNKYDLSGRPLNIKED-PDGENARRASQRTGGSFPGGHVPDMGSGLMN-----LPPSIL 213

Query: 607 NDNYAPPAPPS-----KPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSR 771
           N+   PP   S     + G+ +F+ NL F V W+ LK++   AG V RAD++ D  G SR
Sbjct: 214 NNPNIPPEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSR 273

Query: 772 GFGTVVFNTEEEAAKAVEMFQG 837
           G GTV F    EA +A+ MF G
Sbjct: 274 GMGTVTFEQAIEAVQAISMFNG 295



 Score = 88.2 bits (217), Expect = 2e-16
 Identities = 77/279 (27%), Positives = 116/279 (41%), Gaps = 23/279 (8%)
 Frame = +1

Query: 481  RQDYPPP-EKKHDYGPPRGRGTTYDSRSGSRDRYND---RYQSSRRNDNYAPPAPPSKPG 648
            R+ +P   EK+         G   ++   +++  +D   +   S++ + + P +     G
Sbjct: 31   REPHPAEAEKQQPQHSSSSNGVKMENDESAKEEKSDLKEKSTGSKKANRFHPYSKDKNSG 90

Query: 649  T---------EVFIGNLPFSVNWQALKDLMRD-AGEVIRADVRLDNYGNSRGFGTVVFNT 798
            T          VFI N+P+ + WQA+KDLMR+  GEV   ++  D  G SRG G V F  
Sbjct: 91   TGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKD 150

Query: 799  EEEAAKAVEMFQGYEIEGRKLDXXXXXXXXXXXXYERDSYRSSDTTEKSSYGDRSK---- 966
            EE   KA+E    Y++ GR L+              R S R+  +       D       
Sbjct: 151  EEFVKKALETMNKYDLSGRPLNIKEDPDGENA---RRASQRTGGSFPGGHVPDMGSGLMN 207

Query: 967  ---SAVANKN--SEFTDGVTADGEKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQY 1131
               S + N N   E    + A G    TI+VANL F      L ++F   G   +A+I+ 
Sbjct: 208  LPPSILNNPNIPPEVISNLQA-GRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKE 266

Query: 1132 ADDGRPSGNAVVQFEIADLAENAILQLNNYLYGGRNLQI 1248
              DG+  G   V FE A  A  AI   N      R + +
Sbjct: 267  DKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHV 305



 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 30/73 (41%), Positives = 48/73 (65%)
 Frame = +1

Query: 646 GTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFGTVVFNTEEEAAKAVE 825
           G ++F+ NLPF + WQ LK+     G V+ A+++++N G S+G GTV F++ E A KA  
Sbjct: 498 GNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN-GKSKGCGTVRFDSPESAEKACR 556

Query: 826 MFQGYEIEGRKLD 864
           +  G +I GR++D
Sbjct: 557 IMNGIKISGREID 569



 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 26/75 (34%), Positives = 43/75 (57%)
 Frame = +1

Query: 265 NSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNKGRSRGMATVEFNSKDDVREAINKF 444
           N IF+ N+PFD T + +++ F +   ++ A+I    G+S+G  TV F+S +   +A    
Sbjct: 499 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIM 558

Query: 445 DRYEYRGREIFVRQD 489
           +  +  GREI VR D
Sbjct: 559 NGIKISGREIDVRLD 573



 Score = 43.1 bits (100), Expect = 0.007
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
 Frame = +1

Query: 265 NSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK-GRSRGMATVEFNSKDDVREAINK 441
           ++IF+ N+ F    + ++++F    ++ RADI  +K G+SRGM TV F    +  +AI+ 
Sbjct: 233 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 292

Query: 442 FDRYEYRGREIFVRQD---YPPPEKKHDYGP----PRGRG 540
           F+      R + V+ D    P  E +   G     PRG G
Sbjct: 293 FNGQFLFDRPMHVKMDDKSVPHEEYRSHDGKTPQLPRGLG 332



 Score = 40.8 bits (94), Expect = 0.036
 Identities = 24/77 (31%), Positives = 37/77 (48%)
 Frame = +1

Query: 1018 GEKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQYADDGRPSGNAVVQFEIADLAEN 1197
            G K + I+V NLPF      L + F   G    AEI+  ++G+  G   V+F+  + AE 
Sbjct: 495  GSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIK-MENGKSKGCGTVRFDSPESAEK 553

Query: 1198 AILQLNNYLYGGRNLQI 1248
            A   +N     GR + +
Sbjct: 554  ACRIMNGIKISGREIDV 570


>Q8L941||Q8L941 (TrEMBL: Arabidopsis thaliana (Mouse-ear cress))
           Putative RNA-binding protein.
          Length = 289

 Score = 95.5 bits (236), Expect = 1e-18
 Identities = 66/216 (30%), Positives = 112/216 (51%), Gaps = 5/216 (2%)
 Frame = +1

Query: 229 ADYRSKTERNF--DNSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK--GRSRGMAT 396
           AD     E++F  D  +F+GN+PF+  S  +  +F+   ++   +++ +K  GRSRG   
Sbjct: 77  ADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGF 136

Query: 397 VEFNSKDDVREAINKFDRYEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSRDR 576
           V  +S  +V  A  +F+ YE  GR + V    PPP  K + G  RG  +++ S SGS   
Sbjct: 137 VTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPP--KREDGFSRGPRSSFGS-SGS--G 191

Query: 577 YNDRYQSSRRNDNYAPPAPPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLD- 753
           Y     S             +  G  V++GNL + V+  AL+ L  + G+V+ A V  D 
Sbjct: 192 YGGGGGSG------------AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDR 239

Query: 754 NYGNSRGFGTVVFNTEEEAAKAVEMFQGYEIEGRKL 861
           + G S+GFG V +++ +E   A++   G +++GR++
Sbjct: 240 DSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQI 275



 Score = 91.3 bits (225), Expect = 2e-17
 Identities = 65/229 (28%), Positives = 102/229 (44%), Gaps = 7/229 (3%)
 Frame = +1

Query: 610  DNYAPPAPPSKPG----TEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNY-GNSRG 774
            D +A  APP +       ++F+GNLPF+V+   L  L   AG V   +V  D   G SRG
Sbjct: 74   DGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRG 133

Query: 775  FGTVVFNTEEEAAKAVEMFQGYEIEGRKLDXXXXXXXXXXXXYERDSYRSSDTTEKSSYG 954
            FG V  ++  E   A + F GYE++GR L               R +        +  + 
Sbjct: 134  FGFVTMSSVSEVEAAAQQFNGYELDGRPL---------------RVNAGPPPPKREDGFS 178

Query: 955  DRSKSAVANKNSEFTDGVTADGEKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQY- 1131
               +S+  +  S +  G  +     + +YV NL +   D  L  LF   G+  +A + Y 
Sbjct: 179  RGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYD 238

Query: 1132 ADDGRPSGNAVVQFEIADLAENAILQLNNYLYGGRNLQISYAK-RPEEK 1275
             D GR  G   V ++ +   +NAI  L+     GR +++S A+ RP  +
Sbjct: 239  RDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRR 287



 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
 Frame = +1

Query: 265 NSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK--GRSRGMATVEFNSKDDVREAIN 438
           N +++GN+ +      +E +F +   +V A ++ ++  GRS+G   V ++S  +V+ AI 
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263

Query: 439 KFDRYEYRGREIFVRQ-DYPPPEKKH 513
             D  +  GR+I V + +  PP +++
Sbjct: 264 SLDGADLDGRQIRVSEAEARPPRRQY 289


>Q9ZUU4|AT2G37220|ROC1_ARATH (SP: Arabidopsis thaliana (Mouse-ear
           cress)) Putative ribonucleoprotein At2g37220,
           chloroplast precursor.
          Length = 289

 Score = 95.5 bits (236), Expect = 1e-18
 Identities = 66/216 (30%), Positives = 112/216 (51%), Gaps = 5/216 (2%)
 Frame = +1

Query: 229 ADYRSKTERNF--DNSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK--GRSRGMAT 396
           AD     E++F  D  +F+GN+PF+  S  +  +F+   ++   +++ +K  GRSRG   
Sbjct: 77  ADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGF 136

Query: 397 VEFNSKDDVREAINKFDRYEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSRDR 576
           V  +S  +V  A  +F+ YE  GR + V    PPP  K + G  RG  +++ S SGS   
Sbjct: 137 VTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPP--KREDGFSRGPRSSFGS-SGS--G 191

Query: 577 YNDRYQSSRRNDNYAPPAPPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLD- 753
           Y     S             +  G  V++GNL + V+  AL+ L  + G+V+ A V  D 
Sbjct: 192 YGGGGGSG------------AGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDR 239

Query: 754 NYGNSRGFGTVVFNTEEEAAKAVEMFQGYEIEGRKL 861
           + G S+GFG V +++ +E   A++   G +++GR++
Sbjct: 240 DSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQI 275



 Score = 91.3 bits (225), Expect = 2e-17
 Identities = 65/229 (28%), Positives = 102/229 (44%), Gaps = 7/229 (3%)
 Frame = +1

Query: 610  DNYAPPAPPSKPG----TEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNY-GNSRG 774
            D +A  APP +       ++F+GNLPF+V+   L  L   AG V   +V  D   G SRG
Sbjct: 74   DGFADVAPPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRG 133

Query: 775  FGTVVFNTEEEAAKAVEMFQGYEIEGRKLDXXXXXXXXXXXXYERDSYRSSDTTEKSSYG 954
            FG V  ++  E   A + F GYE++GR L               R +        +  + 
Sbjct: 134  FGFVTMSSVSEVEAAAQQFNGYELDGRPL---------------RVNAGPPPPKREDGFS 178

Query: 955  DRSKSAVANKNSEFTDGVTADGEKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQY- 1131
               +S+  +  S +  G  +     + +YV NL +   D  L  LF   G+  +A + Y 
Sbjct: 179  RGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYD 238

Query: 1132 ADDGRPSGNAVVQFEIADLAENAILQLNNYLYGGRNLQISYAK-RPEEK 1275
             D GR  G   V ++ +   +NAI  L+     GR +++S A+ RP  +
Sbjct: 239  RDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEAEARPPRR 287



 Score = 47.0 bits (110), Expect = 5e-04
 Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
 Frame = +1

Query: 265 NSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK--GRSRGMATVEFNSKDDVREAIN 438
           N +++GN+ +      +E +F +   +V A ++ ++  GRS+G   V ++S  +V+ AI 
Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263

Query: 439 KFDRYEYRGREIFVRQ-DYPPPEKKH 513
             D  +  GR+I V + +  PP +++
Sbjct: 264 SLDGADLDGRQIRVSEAEARPPRRQY 289


>P49314||ROC2_NICPL (SP: Nicotiana plumbaginifolia (Leadwort-leaved
           tobacco)) 31 kDa ribonucleoprotein, chloroplast
           precursor (CP-RBP31).
          Length = 292

 Score = 95.1 bits (235), Expect = 2e-18
 Identities = 62/216 (28%), Positives = 112/216 (51%), Gaps = 4/216 (1%)
 Frame = +1

Query: 226 DADYRSKTERNFDNSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK--GRSRGMATV 399
           D +   +   + D  +F+GN+PF   S  +  +F++  ++   +++ +K  GRSRG   V
Sbjct: 75  DVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFV 134

Query: 400 EFNSKDDVREAINKFDRYEYRGREIFVRQDYPPPEKKH-DYGPPRGRGTTYDSRSGSRDR 576
             ++K++V  A  +F+ YE  GR I V     P ++++  +G  RG  ++Y    G RD 
Sbjct: 135 TMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSY---GGGRDG 191

Query: 577 YNDRYQSSRRNDNYAPPAPPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLD- 753
            N  +  +R   +             V++GNL + V+  ALK+L  + G V+ A V  D 
Sbjct: 192 -NSSFGGARGGRSV-------DSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDR 243

Query: 754 NYGNSRGFGTVVFNTEEEAAKAVEMFQGYEIEGRKL 861
           + G SRGFG V +++ +E   A++   G +++GR +
Sbjct: 244 DSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSI 279



 Score = 89.4 bits (220), Expect = 9e-17
 Identities = 70/214 (32%), Positives = 100/214 (46%), Gaps = 6/214 (2%)
 Frame = +1

Query: 652  EVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNY-GNSRGFGTVVFNTEEEAAKAVEM 828
            ++F+GNLPFSV+  AL  L   AG V   +V  D   G SRGFG V  +T+EE   A + 
Sbjct: 89   KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQ 148

Query: 829  FQGYEIEGRKLDXXXXXXXXXXXXYERDSYRSSDTTEKSSYGDRSKSAVANKNSEFTDGV 1008
            F GYEI+GR +                 + R + +      G+ S     + NS F  G 
Sbjct: 149  FNGYEIDGRAIRVNAG---------PAPAKRENSSFGGGRGGNSSYGGGRDGNSSF--GG 197

Query: 1009 TADG---EKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQY-ADDGRPSGNAVVQFE 1176
               G   + S+ +YV NL +   D  L +LF   G    A++ Y  D GR  G   V + 
Sbjct: 198  ARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYS 257

Query: 1177 IADLAENAILQLNNYLYGGRNLQISYA-KRPEEK 1275
             A    +AI  LN     GR++++S A +RP  +
Sbjct: 258  SAKEVNDAIDSLNGIDLDGRSIRVSAAEERPRRQ 291


>Q9P2K5|KIAA1341|Q9P2K5 (TrEMBL: Homo sapiens (Human)) Hypothetical
           protein KIAA1341 (Fragment).
          Length = 620

 Score = 95.1 bits (235), Expect = 2e-18
 Identities = 62/201 (30%), Positives = 101/201 (50%), Gaps = 10/201 (4%)
 Frame = +1

Query: 265 NSIFIGNIPFDCTSRDIEDIFKKDFS-IVRADIVTN-KGRSRGMATVEFNSKDDVREAIN 438
           N +FI NIP+D   + I+D+ ++    +   ++  + +G+SRG   VEF  ++ V++A+ 
Sbjct: 120 NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 179

Query: 439 KFDRYEYRGREIFVRQDYPPPEKKHDYGPPRGR---GTTYDSRSGSRDRYNDRYQSSRRN 609
             ++Y+  GR + +++D      +       G    G   D  SG  +        S  N
Sbjct: 180 TMNKYDLSGRPLNIKEDPDGENARRALQRTGGSFPGGHVPDMGSGLMN-----LPPSILN 234

Query: 610 DNYAPPAPPS-----KPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRG 774
           +   PP   S     + G+ +F+ NL F V W+ LK++   AG V RAD++ D  G SRG
Sbjct: 235 NPNIPPEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRG 294

Query: 775 FGTVVFNTEEEAAKAVEMFQG 837
            GTV F    EA +A+ MF G
Sbjct: 295 MGTVTFEQAIEAVQAISMFNG 315



 Score = 85.9 bits (211), Expect = 1e-15
 Identities = 76/279 (27%), Positives = 115/279 (41%), Gaps = 23/279 (8%)
 Frame = +1

Query: 481  RQDYPPP-EKKHDYGPPRGRGTTYDSRSGSRDRYND---RYQSSRRNDNYAPPAPPSKPG 648
            R+ +P   EK+         G   ++   +++  +D   +   S++ + + P +     G
Sbjct: 51   REPHPAEAEKQQPQHSSSSNGVKMENDESAKEEKSDLKEKSTGSKKANRFHPYSKDKNSG 110

Query: 649  T---------EVFIGNLPFSVNWQALKDLMRD-AGEVIRADVRLDNYGNSRGFGTVVFNT 798
            T          VFI N+P+ + WQA+KDLMR+  GEV   ++  D  G SRG G V F  
Sbjct: 111  TGEKKGPNRNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKD 170

Query: 799  EEEAAKAVEMFQGYEIEGRKLDXXXXXXXXXXXXYERDSYRSSDTTEKSSYGDRSK---- 966
            EE   KA+E    Y++ GR L+              R   R+  +       D       
Sbjct: 171  EEFVKKALETMNKYDLSGRPLNIKEDPDGENA---RRALQRTGGSFPGGHVPDMGSGLMN 227

Query: 967  ---SAVANKN--SEFTDGVTADGEKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQY 1131
               S + N N   E    + A G    TI+VANL F      L ++F   G   +A+I+ 
Sbjct: 228  LPPSILNNPNIPPEVISNLQA-GRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKRADIKE 286

Query: 1132 ADDGRPSGNAVVQFEIADLAENAILQLNNYLYGGRNLQI 1248
              DG+  G   V FE A  A  AI   N      R + +
Sbjct: 287  DKDGKSRGMGTVTFEQAIEAVQAISMFNGQFLFDRPMHV 325



 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 30/73 (41%), Positives = 48/73 (65%)
 Frame = +1

Query: 646 GTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFGTVVFNTEEEAAKAVE 825
           G ++F+ NLPF + WQ LK+     G V+ A+++++N G S+G GTV F++ E A KA  
Sbjct: 542 GNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN-GKSKGCGTVRFDSPESAEKACR 600

Query: 826 MFQGYEIEGRKLD 864
           +  G +I GR++D
Sbjct: 601 IMNGIKISGREID 613



 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 26/75 (34%), Positives = 43/75 (57%)
 Frame = +1

Query: 265 NSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNKGRSRGMATVEFNSKDDVREAINKF 444
           N IF+ N+PFD T + +++ F +   ++ A+I    G+S+G  TV F+S +   +A    
Sbjct: 543 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIM 602

Query: 445 DRYEYRGREIFVRQD 489
           +  +  GREI VR D
Sbjct: 603 NGIKISGREIDVRLD 617



 Score = 43.1 bits (100), Expect = 0.007
 Identities = 31/100 (31%), Positives = 51/100 (51%), Gaps = 8/100 (8%)
 Frame = +1

Query: 265 NSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK-GRSRGMATVEFNSKDDVREAINK 441
           ++IF+ N+ F    + ++++F    ++ RADI  +K G+SRGM TV F    +  +AI+ 
Sbjct: 253 STIFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISM 312

Query: 442 FDRYEYRGREIFVRQD---YPPPEKKHDYGP----PRGRG 540
           F+      R + V+ D    P  E +   G     PRG G
Sbjct: 313 FNGQFLFDRPMHVKMDDKSVPHEEYRSHDGKTPQLPRGLG 352



 Score = 40.8 bits (94), Expect = 0.036
 Identities = 24/77 (31%), Positives = 37/77 (48%)
 Frame = +1

Query: 1018 GEKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQYADDGRPSGNAVVQFEIADLAEN 1197
            G K + I+V NLPF      L + F   G    AEI+  ++G+  G   V+F+  + AE 
Sbjct: 539  GSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIK-MENGKSKGCGTVRFDSPESAEK 597

Query: 1198 AILQLNNYLYGGRNLQI 1248
            A   +N     GR + +
Sbjct: 598  ACRIMNGIKISGREIDV 614


>Q8LHN4|P0519E12.13|Q8LHN4 (TrEMBL: Oryza sativa (japonica
           cultivar-group)) Putative ribonucleoprotein.
          Length = 264

 Score = 94.4 bits (233), Expect = 3e-18
 Identities = 60/221 (27%), Positives = 107/221 (48%), Gaps = 5/221 (2%)
 Frame = +1

Query: 214 VATSDADYRSKTERNFDNSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK--GRSRG 387
           V   +    S+ E   D  +F+GN+PF   S  +  +F++  S+   ++V ++  GRSRG
Sbjct: 63  VEEEEGGAESEGEFAEDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQTGRSRG 122

Query: 388 MATVEFNSKDDVREAINKFDRYEYRGREIFVRQDYPPPEKKHDYGP--PRGRGTTYDSRS 561
              V  ++ ++   A+ +F+ Y ++GR + V    PPP  + D+ P  PRG G+ +DS +
Sbjct: 123 FGFVTMSTAEEAGAAVEQFNGYTFQGRPLRVNSGPPPP--RDDFAPRSPRGGGSNFDSSN 180

Query: 562 GSRDRYNDRYQSSRRNDNYAPPAPPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRAD 741
                                         ++++GNL + V+   L++L  + G V+ A 
Sbjct: 181 ------------------------------KLYVGNLAWGVDNSTLENLFSEQGTVLDAK 210

Query: 742 VRLDNY-GNSRGFGTVVFNTEEEAAKAVEMFQGYEIEGRKL 861
           V  D   G SRGFG V + + EE   A+    G +++GR++
Sbjct: 211 VIYDRESGRSRGFGFVTYGSAEEVNNAISNLDGVDLDGRQI 251



 Score = 50.8 bits (120), Expect = 3e-05
 Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 3/102 (2%)
 Frame = +1

Query: 970  AVANKNSEFTDGVTADGEKSDT--IYVANLPFATQDDDLYDLFETVGRTTKAEIQY-ADD 1140
            AV+++  E   G  ++GE ++   ++V NLPF+     L  LFE  G     E+ Y    
Sbjct: 58   AVSSEVEEEEGGAESEGEFAEDLKVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVVYDRQT 117

Query: 1141 GRPSGNAVVQFEIADLAENAILQLNNYLYGGRNLQISYAKRP 1266
            GR  G   V    A+ A  A+ Q N Y + GR L+++    P
Sbjct: 118  GRSRGFGFVTMSTAEEAGAAVEQFNGYTFQGRPLRVNSGPPP 159



 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 25/89 (28%), Positives = 50/89 (56%), Gaps = 4/89 (4%)
 Frame = +1

Query: 256 NFD--NSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK--GRSRGMATVEFNSKDDV 423
           NFD  N +++GN+ +   +  +E++F +  +++ A ++ ++  GRSRG   V + S ++V
Sbjct: 175 NFDSSNKLYVGNLAWGVDNSTLENLFSEQGTVLDAKVIYDRESGRSRGFGFVTYGSAEEV 234

Query: 424 REAINKFDRYEYRGREIFVRQDYPPPEKK 510
             AI+  D  +  GR+I V      P ++
Sbjct: 235 NNAISNLDGVDLDGRQIRVTVAESKPRRQ 263


>Q86PS0|GBP|Q86PS0 (TrEMBL: Cryptosporidium parvum) Putative single
            stranded G-strand telomeric DNA-binding protein.
          Length = 198

 Score = 91.3 bits (225), Expect = 2e-17
 Identities = 62/204 (30%), Positives = 92/204 (45%)
 Frame = +1

Query: 637  SKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFGTVVFNTEEEAAK 816
            S     V++GNLP+   W  LKD MR AG VIRADV  D  G SRG G V ++  EEA +
Sbjct: 3    SDKNCRVYVGNLPWKAKWHDLKDHMRQAGNVIRADVFEDEVGRSRGCGVVEYSFPEEAQR 62

Query: 817  AVEMFQGYEIEGRKLDXXXXXXXXXXXXYERDSYRSSDTTEKSSYGDRSKSAVANKNSEF 996
            A+       +    LD              R   RS+    +  YG R+++       + 
Sbjct: 63   AINELNNTTL----LDRLIFVREDREDESSRYGRRSNKWNNR-GYGMRTRTHAPRPPLK- 116

Query: 997  TDGVTADGEKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQYADDGRPSGNAVVQFE 1176
                  +  K   ++V NL + T  +DL   F  +G     E+ Y +DGR  G A + F 
Sbjct: 117  ------EENKGKQVFVTNLAWKTTQEDLAKAFNEIGPLESCEVFYFEDGRSRGIATIVFT 170

Query: 1177 IADLAENAILQLNNYLYGGRNLQI 1248
              + A+ A+ +LN+    GR + +
Sbjct: 171  DPNHAQLAVEKLNDREIDGREILV 194



 Score = 87.0 bits (214), Expect = 4e-16
 Identities = 56/199 (28%), Positives = 95/199 (47%), Gaps = 2/199 (1%)
 Frame = +1

Query: 271 IFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK-GRSRGMATVEFNSKDDVREAINKFD 447
           +++GN+P+     D++D  ++  +++RAD+  ++ GRSRG   VE++  ++ + AIN+ +
Sbjct: 9   VYVGNLPWKAKWHDLKDHMRQAGNVIRADVFEDEVGRSRGCGVVEYSFPEEAQRAINELN 68

Query: 448 RYEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSRDRYNDR-YQSSRRNDNYAP 624
                 R IFVR+D      +            Y  RS   +++N+R Y    R     P
Sbjct: 69  NTTLLDRLIFVREDREDESSR------------YGRRS---NKWNNRGYGMRTRTHAPRP 113

Query: 625 PAPPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFGTVVFNTEE 804
           P      G +VF+ NL +    + L     + G +   +V     G SRG  T+VF    
Sbjct: 114 PLKEENKGKQVFVTNLAWKTTQEDLAKAFNEIGPLESCEVFYFEDGRSRGIATIVFTDPN 173

Query: 805 EAAKAVEMFQGYEIEGRKL 861
            A  AVE     EI+GR++
Sbjct: 174 HAQLAVEKLNDREIDGREI 192



 Score = 44.7 bits (104), Expect = 0.002
 Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
 Frame = +1

Query: 250 ERNFDNSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVT-NKGRSRGMATVEFNSKDDVR 426
           E N    +F+ N+ +  T  D+   F +   +   ++     GRSRG+AT+ F   +  +
Sbjct: 117 EENKGKQVFVTNLAWKTTQEDLAKAFNEIGPLESCEVFYFEDGRSRGIATIVFTDPNHAQ 176

Query: 427 EAINKFDRYEYRGREIFVRQD 489
            A+ K +  E  GREI VR D
Sbjct: 177 LAVEKLNDREIDGREILVRID 197


>Q9Y655||Q9Y655 (TrEMBL: Homo sapiens (Human)) Myelin gene
           expression factor 2.
          Length = 547

 Score = 90.9 bits (224), Expect = 3e-17
 Identities = 57/199 (28%), Positives = 99/199 (49%), Gaps = 8/199 (4%)
 Frame = +1

Query: 265 NSIFIGNIPFDCTSRDIEDIFKKDFS-IVRADIVTN-KGRSRGMATVEFNSKDDVREAIN 438
           N +FI NIP+D   + I+D+ ++    +   ++  + +G+SRG   VEF  ++ V++A+ 
Sbjct: 47  NRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALE 106

Query: 439 KFDRYEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSR--DRYNDRYQSSRRND 612
             ++Y+  GR + +++D   P+ ++     +  GT++     S       +   S   N 
Sbjct: 107 TMNKYDLSGRRVNIKED---PDGENARRALQRTGTSFQGSHASDVGSGLVNLPPSILNNP 163

Query: 613 NYAPPA----PPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFG 780
           N  P         + G+ +F+ NL F V W+ LK++   AG V     + D  G SRG G
Sbjct: 164 NIPPEVISNLQAGRLGSTIFVANLDFKVGWKKLKEVFSIAGTVKAGSYKEDKDGKSRGMG 223

Query: 781 TVVFNTEEEAAKAVEMFQG 837
           TV F    EA +A+ MF G
Sbjct: 224 TVTFEQAIEAVQAISMFNG 242



 Score = 85.1 bits (209), Expect = 2e-15
 Identities = 67/252 (26%), Positives = 105/252 (41%), Gaps = 19/252 (7%)
 Frame = +1

Query: 550  DSRSGSRDRYNDRYQSSRRNDNYAPPAPPSKPGT---------EVFIGNLPFSVNWQALK 702
            +S    +    ++   S++ + + P +     GT          VFI N+P+ + WQA+K
Sbjct: 5    ESAKEEKSDLKEKSTGSKKANRFHPYSKDKNSGTGEKKGPNRNRVFISNIPYDMKWQAIK 64

Query: 703  DLMRD-AGEVIRADVRLDNYGNSRGFGTVVFNTEEEAAKAVEMFQGYEIEGRKLDXXXXX 879
            DLMR+  GEV   ++  D  G SRG G V F  EE   KA+E    Y++ GR+++     
Sbjct: 65   DLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKALETMNKYDLSGRRVNIKEDP 124

Query: 880  XXXXXXXYERDSYRSSDTTEKSSYGDRSKSAVAN------KNSEFTDGVTAD---GEKSD 1032
                     R + + + T+ + S+     S + N       N      V ++   G    
Sbjct: 125  DGENA----RRALQRTGTSFQGSHASDVGSGLVNLPPSILNNPNIPPEVISNLQAGRLGS 180

Query: 1033 TIYVANLPFATQDDDLYDLFETVGRTTKAEIQYADDGRPSGNAVVQFEIADLAENAILQL 1212
            TI+VANL F      L ++F   G       +   DG+  G   V FE A  A  AI   
Sbjct: 181  TIFVANLDFKVGWKKLKEVFSIAGTVKAGSYKEDKDGKSRGMGTVTFEQAIEAVQAISMF 240

Query: 1213 NNYLYGGRNLQI 1248
            N      R + +
Sbjct: 241  NGQFLFDRPMHV 252



 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 30/73 (41%), Positives = 48/73 (65%)
 Frame = +1

Query: 646 GTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFGTVVFNTEEEAAKAVE 825
           G ++F+ NLPF + WQ LK+     G V+ A+++++N G S+G GTV F++ E A KA  
Sbjct: 469 GNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMEN-GKSKGCGTVRFDSPESAEKACR 527

Query: 826 MFQGYEIEGRKLD 864
           +  G +I GR++D
Sbjct: 528 IMNGIKISGREID 540



 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 26/75 (34%), Positives = 43/75 (57%)
 Frame = +1

Query: 265 NSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNKGRSRGMATVEFNSKDDVREAINKF 444
           N IF+ N+PFD T + +++ F +   ++ A+I    G+S+G  TV F+S +   +A    
Sbjct: 470 NQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIKMENGKSKGCGTVRFDSPESAEKACRIM 529

Query: 445 DRYEYRGREIFVRQD 489
           +  +  GREI VR D
Sbjct: 530 NGIKISGREIDVRLD 544



 Score = 40.8 bits (94), Expect = 0.036
 Identities = 24/77 (31%), Positives = 37/77 (48%)
 Frame = +1

Query: 1018 GEKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQYADDGRPSGNAVVQFEIADLAEN 1197
            G K + I+V NLPF      L + F   G    AEI+  ++G+  G   V+F+  + AE 
Sbjct: 466  GSKGNQIFVRNLPFDLTWQKLKEKFSQCGHVMFAEIK-MENGKSKGCGTVRFDSPESAEK 524

Query: 1198 AILQLNNYLYGGRNLQI 1248
            A   +N     GR + +
Sbjct: 525  ACRIMNGIKISGREIDV 541



 Score = 35.0 bits (79), Expect = 2.0
 Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
 Frame = +1

Query: 265 NSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK-GRSRGMATVEFNSKDDVREAINK 441
           ++IF+ N+ F    + ++++F    ++       +K G+SRGM TV F    +  +AI+ 
Sbjct: 180 STIFVANLDFKVGWKKLKEVFSIAGTVKAGSYKEDKDGKSRGMGTVTFEQAIEAVQAISM 239

Query: 442 FDRYEYRGREIFVRQD---YPPPEKKHDYGP----PRGRG 540
           F+      R + V+ D    P  E +   G     PRG G
Sbjct: 240 FNGQFLFDRPMHVKMDDKSVPHEEYRSPDGKTPQLPRGLG 279


>Q8S7G2|OSJNBB0048D20.12|Q8S7G2 (TrEMBL: Oryza sativa (Rice))
           Putative ribonucleoprotein.
          Length = 265

 Score = 90.5 bits (223), Expect = 4e-17
 Identities = 58/203 (28%), Positives = 92/203 (45%), Gaps = 3/203 (1%)
 Frame = +1

Query: 262 DNSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK--GRSRGMATVEFNSKDDVREAI 435
           D  +F+GN+PF   S  +  +F++  S+   +++ +K  GRSRG   V  +S ++V  A+
Sbjct: 85  DLRVFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAV 144

Query: 436 NKFDRYEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSRDRYNDRYQSSRRNDN 615
            +F+ Y   GR + V    PPP ++     PRG                           
Sbjct: 145 EQFNGYILDGRSLRVNSGPPPPREQSSQRAPRGEAN------------------------ 180

Query: 616 YAPPAPPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNY-GNSRGFGTVVF 792
                        V++GNL + V+  AL +L    GEV+ A V  D   G SRGFG V +
Sbjct: 181 ------------RVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTY 228

Query: 793 NTEEEAAKAVEMFQGYEIEGRKL 861
            + EE   AV    G +++GR++
Sbjct: 229 GSAEEVENAVSNLDGADMDGRQI 251



 Score = 45.4 bits (106), Expect = 0.001
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 1/105 (0%)
 Frame = +1

Query: 955  DRSKSAVANKNSEFTDGVTADGEKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQYA 1134
            D  +    +   EF+D +         ++V NLPF+     L  LFE  G     E+ Y 
Sbjct: 69   DEEEEEEGSGGEEFSDDLR--------VFVGNLPFSVDSAQLAGLFEQAGSVEMVEVIYD 120

Query: 1135 D-DGRPSGNAVVQFEIADLAENAILQLNNYLYGGRNLQISYAKRP 1266
               GR  G   V     +  E A+ Q N Y+  GR+L+++    P
Sbjct: 121  KLTGRSRGFGFVTMSSVEEVEAAVEQFNGYILDGRSLRVNSGPPP 165



 Score = 44.7 bits (104), Expect = 0.002
 Identities = 22/93 (23%), Positives = 50/93 (53%), Gaps = 3/93 (3%)
 Frame = +1

Query: 244 KTERNFDNSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK--GRSRGMATVEFNSKD 417
           +  R   N +++GN+ +   +  + ++F  +  ++ A ++ ++  GRSRG   V + S +
Sbjct: 173 RAPRGEANRVYVGNLSWGVDNAALANLFSGEGEVLEAKVIYDRESGRSRGFGFVTYGSAE 232

Query: 418 DVREAINKFDRYEYRGREIFVR-QDYPPPEKKH 513
           +V  A++  D  +  GR+I V   +  PP +++
Sbjct: 233 EVENAVSNLDGADMDGRQIRVTVAESKPPRRQY 265


>Q23796||Q23796 (TrEMBL: Chironomus tentans (Midge)) hnRNP protein.
          Length = 322

 Score = 89.7 bits (221), Expect = 7e-17
 Identities = 72/242 (29%), Positives = 105/242 (43%), Gaps = 2/242 (0%)
 Frame = +1

Query: 271 IFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNKGRSRGMATVEFNSKDDVREAINKFDR 450
           +++G +P+    RD+E  FK  +   R  ++ N     G   VEF    D  +A+     
Sbjct: 6   VYVGGLPYGTRERDLEKFFK-GYGRTRDILIKN-----GYGFVEFEDYRDADDAV----- 54

Query: 451 YEYRGREIFVRQDYPPPEKKHDYGPPRGRG--TTYDSRSGSRDRYNDRYQSSRRNDNYAP 624
           YE  G+E+   +    P +    G  RG      YD R G R RY+    SSR N  Y P
Sbjct: 55  YELNGKELLGERVVVEPAR----GTARGGSHRDRYDDRYGRRGRYDRYNNSSRSNSRYGP 110

Query: 625 PAPPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFGTVVFNTEE 804
           P    +    + + NL   V+WQ LKD MR AGEV  AD    N    R  G V F T +
Sbjct: 111 PL---RTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADAHKQN----RNEGVVEFATLK 163

Query: 805 EAAKAVEMFQGYEIEGRKLDXXXXXXXXXXXXYERDSYRSSDTTEKSSYGDRSKSAVANK 984
           +   A+E     E+ GR++               R S  +S +  +S    RS+S  +++
Sbjct: 164 DMKTAIEKLDDTELNGRRIRLVEDTRRNGRRGRSRSS-TTSRSRSRSRRRSRSRSRRSSR 222

Query: 985 NS 990
            S
Sbjct: 223 RS 224



 Score = 42.0 bits (97), Expect = 0.016
 Identities = 47/202 (23%), Positives = 76/202 (37%), Gaps = 1/202 (0%)
 Frame = +1

Query: 646  GTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFGTVVFNTEEEAAKAVE 825
            G+ V++G LP+    + L+   +  G     D+ + N     G+G V F    +A  AV 
Sbjct: 3    GSRVYVGGLPYGTRERDLEKFFKGYGRT--RDILIKN-----GYGFVEFEDYRDADDAVY 55

Query: 826  MFQGYEIEGRKLDXXXXXXXXXXXXYERDSYRSSDTTEKSSYGDRSKSAVANKNSEFTDG 1005
               G E+ G ++             + RD Y          YG R +    N +S     
Sbjct: 56   ELNGKELLGERVVVEPARGTARGGSH-RDRY-------DDRYGRRGRYDRYNNSSRSNSR 107

Query: 1006 VTADGEKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQYADDGRPSGN-AVVQFEIA 1182
                      + V NL       DL D     G     E+ YAD  + + N  VV+F   
Sbjct: 108  YGPPLRTEYRLIVENLSSRVSWQDLKDYMRQAG-----EVTYADAHKQNRNEGVVEFATL 162

Query: 1183 DLAENAILQLNNYLYGGRNLQI 1248
               + AI +L++    GR +++
Sbjct: 163  KDMKTAIEKLDDTELNGRRIRL 184



 Score = 34.7 bits (78), Expect = 2.6
 Identities = 22/75 (29%), Positives = 37/75 (49%)
 Frame = +1

Query: 1036 IYVANLPFATQDDDLYDLFETVGRTTKAEIQYADDGRPSGNAVVQFEIADLAENAILQLN 1215
            +YV  LP+ T++ DL   F+  GRT    I+       +G   V+FE    A++A+ +LN
Sbjct: 6    VYVGGLPYGTRERDLEKFFKGYGRTRDILIK-------NGYGFVEFEDYRDADDAVYELN 58

Query: 1216 NYLYGGRNLQISYAK 1260
                 G  + +  A+
Sbjct: 59   GKELLGERVVVEPAR 73


>Q41367||Q41367 (TrEMBL: Spinacia oleracea (Spinach)) 24 kDa RNA
           binding protein (Fragment).
          Length = 220

 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 61/203 (30%), Positives = 94/203 (46%), Gaps = 3/203 (1%)
 Frame = +1

Query: 262 DNSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK--GRSRGMATVEFNSKDDVREAI 435
           D  IF+GN+PF+  S ++  +F    ++   +++ +K  GRSRG   V  +S ++V  A 
Sbjct: 37  DLKIFVGNLPFNVDSAELAGLFGAAGTVEMVEVIYDKLTGRSRGFGFVTMSSVEEVEAAA 96

Query: 436 NKFDRYEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSRDRYNDRYQSSRRNDN 615
            +F+ YE  GR + V +D        D   PR                 D + SS R   
Sbjct: 97  QQFNNYELDGRTLRVTED-----SHKDMTLPRVESEC------------DSFGSSNR--- 136

Query: 616 YAPPAPPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLD-NYGNSRGFGTVVF 792
                        V +GNL + V+  ALK L  + G+V+ A V  D + G SRGFG V +
Sbjct: 137 -------------VHVGNLSWKVDDDALKTLFSETGDVVEAKVIYDRDTGRSRGFGFVTY 183

Query: 793 NTEEEAAKAVEMFQGYEIEGRKL 861
           N+  E   A+E   G ++ GR +
Sbjct: 184 NSANEVNTAIESLDGVDLNGRSI 206



 Score = 80.9 bits (198), Expect = 3e-14
 Identities = 62/224 (27%), Positives = 97/224 (43%), Gaps = 2/224 (0%)
 Frame = +1

Query: 610  DNYAPPAPPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNY-GNSRGFGTV 786
            D+ A   P   P  ++F+GNLPF+V+   L  L   AG V   +V  D   G SRGFG V
Sbjct: 25   DDDAGRQPNFSPDLKIFVGNLPFNVDSAELAGLFGAAGTVEMVEVIYDKLTGRSRGFGFV 84

Query: 787  VFNTEEEAAKAVEMFQGYEIEGRKLDXXXXXXXXXXXXYERDSYRSSDTTEKSSYGDRSK 966
              ++ EE   A + F  YE++GR L                          + S+ D + 
Sbjct: 85   TMSSVEEVEAAAQQFNNYELDGRTL-----------------------RVTEDSHKDMTL 121

Query: 967  SAVANKNSEFTDGVTADGEKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQY-ADDG 1143
              V ++   F          S+ ++V NL +   DD L  LF   G   +A++ Y  D G
Sbjct: 122  PRVESECDSF--------GSSNRVHVGNLSWKVDDDALKTLFSETGDVVEAKVIYDRDTG 173

Query: 1144 RPSGNAVVQFEIADLAENAILQLNNYLYGGRNLQISYAKRPEEK 1275
            R  G   V +  A+    AI  L+     GR+++++ A+  + +
Sbjct: 174  RSRGFGFVTYNSANEVNTAIESLDGVDLNGRSIRVTAAEARQRR 217



 Score = 43.5 bits (101), Expect = 0.006
 Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
 Frame = +1

Query: 265 NSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNK--GRSRGMATVEFNSKDDVREAIN 438
           N + +GN+ +      ++ +F +   +V A ++ ++  GRSRG   V +NS ++V  AI 
Sbjct: 135 NRVHVGNLSWKVDDDALKTLFSETGDVVEAKVIYDRDTGRSRGFGFVTYNSANEVNTAIE 194

Query: 439 KFDRYEYRGREIFV 480
             D  +  GR I V
Sbjct: 195 SLDGVDLNGRSIRV 208


>Q09167|SFRS5|SFR5_RAT (SP: Rattus norvegicus (Rat)) Splicing factor,
            arginine/serine-rich 5 (Pre-mRNA splicing factor SRP40)
            (Insulin-induced growth response protein CL-4)
            (Delayed-early protein HRS).
          Length = 269

 Score = 86.3 bits (212), Expect = 7e-16
 Identities = 72/253 (28%), Positives = 101/253 (39%)
 Frame = +1

Query: 271  IFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNKGRSRGMATVEFNSKDDVREAINKFDR 450
            +FIG +      +D+E  FK    I   D+       RG   VEF    D  +A+ + D 
Sbjct: 6    VFIGRLNPAAREKDVERFFKGYGRIRDIDL------KRGFGFVEFEDPRDADDAVYELDG 59

Query: 451  YEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSRDRYNDRYQSSRRNDNYAPPA 630
             E     + +           ++   R RG         R RY+DR+ SSRR  N    A
Sbjct: 60   KELCSERVTI-----------EHARARSRG------GRGRGRYSDRF-SSRRPRNDRRNA 101

Query: 631  PPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFGTVVFNTEEEA 810
            PP +    + + NL   V+WQ LKD MR AGEV  AD            G V F +  + 
Sbjct: 102  PPVRTENRLIVENLSSRVSWQDLKDFMRQAGEVTFADAHRPKLNE----GVVEFASYGDL 157

Query: 811  AKAVEMFQGYEIEGRKLDXXXXXXXXXXXXYERDSYRSSDTTEKSSYGDRSKSAVANKNS 990
              A+E   G EI GRK+               R   RSS  +   S   RSKS   +++ 
Sbjct: 158  KNAIEKLSGKEINGRKIKLIEGSKRHRSRSRSRSRTRSSSRSRSRSRSRRSKSYSRSRSR 217

Query: 991  EFTDGVTADGEKS 1029
              +   +  G +S
Sbjct: 218  SRSRSKSRSGSRS 230


>P26686|E(DFD)|SR55_DROME (SP: Drosophila melanogaster (Fruit fly))
           Serine-arginine protein 55 (SRP55) (Enhancer of
           deformed) (52-kDa bracketing protein) (B52 protein).
          Length = 375

 Score = 84.0 bits (206), Expect = 4e-15
 Identities = 69/241 (28%), Positives = 104/241 (43%), Gaps = 8/241 (3%)
 Frame = +1

Query: 271 IFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNKGRSRGMATVEFNSKDDVREAINKFDR 450
           +++G +P+    RD+E  FK  +   R  ++ N     G   VEF    D  +A+     
Sbjct: 5   VYVGGLPYGVRERDLERFFK-GYGRTRDILIKN-----GYGFVEFEDYRDADDAV----- 53

Query: 451 YEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSR-----DRYNDRYQSSRRNDN 615
           YE  G+E+   +    P +    G  R R   YD R G R      RYN++ ++SR +  
Sbjct: 54  YELNGKELLGERVVVEPARGTARGSNRDR---YDDRYGGRRGGGGGRYNEKNKNSRSSSR 110

Query: 616 YAPPAPPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFGTVVFN 795
           Y PP    +    + + NL   V+WQ LKD MR AGEV  AD     +   R  G V F 
Sbjct: 111 YGPPL---RTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADA----HKQRRNEGVVEFA 163

Query: 796 TEEEAAKAVEMFQGYEIEGRKL---DXXXXXXXXXXXXYERDSYRSSDTTEKSSYGDRSK 966
           +  +   A+E     E+ GR++   +              R   RSS +  +S    RS+
Sbjct: 164 SLSDMKTAIEKLDDTELNGRRIHLVEDRRGGASGGGGGSGRGRSRSSSSRSRSRSRRRSR 223

Query: 967 S 969
           S
Sbjct: 224 S 224



 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 36/126 (28%), Positives = 57/126 (45%)
 Frame = +1

Query: 271 IFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNKGRSRGMATVEFNSKDDVREAINKFDR 450
           + + N+    + +D++D  ++   +  AD   +K R R    VEF S  D++ AI K D 
Sbjct: 121 LIVENLSSRVSWQDLKDYMRQAGEVTYAD--AHKQR-RNEGVVEFASLSDMKTAIEKLDD 177

Query: 451 YEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSRDRYNDRYQSSRRNDNYAPPA 630
            E  GR I + +D          G  RGR  +  SRS SR R   R + S  + + +   
Sbjct: 178 TELNGRRIHLVEDRRGGASGGGGGSGRGRSRSSSSRSRSRSRRRSRSRRSTHSRSKSRSR 237

Query: 631 PPSKPG 648
             S+ G
Sbjct: 238 SKSRGG 243



 Score = 43.5 bits (101), Expect = 0.006
 Identities = 50/207 (24%), Positives = 77/207 (37%), Gaps = 1/207 (0%)
 Frame = +1

Query: 646  GTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFGTVVFNTEEEAAKAVE 825
            G+ V++G LP+ V  + L+   +  G     D+ + N     G+G V F    +A  AV 
Sbjct: 2    GSRVYVGGLPYGVRERDLERFFKGYGRT--RDILIKN-----GYGFVEFEDYRDADDAVY 54

Query: 826  MFQGYEIEGRKLDXXXXXXXXXXXXYERDSYRSSDTTEKSSYGDRSKSAVANKNSEFTDG 1005
               G E+ G ++               RD Y       +   G R      NKNS  +  
Sbjct: 55   ELNGKELLGERV--VVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNE--KNKNSRSSSR 110

Query: 1006 VTADGEKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQYADDGRPSGN-AVVQFEIA 1182
                      + V NL       DL D     G     E+ YAD  +   N  VV+F   
Sbjct: 111  YGPPLRTEYRLIVENLSSRVSWQDLKDYMRQAG-----EVTYADAHKQRRNEGVVEFASL 165

Query: 1183 DLAENAILQLNNYLYGGRNLQISYAKR 1263
               + AI +L++    GR + +   +R
Sbjct: 166  SDMKTAIEKLDDTELNGRRIHLVEDRR 192


>Q9VFT0|B52|Q9VFT0 (TrEMBL: Drosophila melanogaster (Fruit fly)) B52
           protein.
          Length = 329

 Score = 83.6 bits (205), Expect = 5e-15
 Identities = 69/241 (28%), Positives = 104/241 (43%), Gaps = 8/241 (3%)
 Frame = +1

Query: 271 IFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNKGRSRGMATVEFNSKDDVREAINKFDR 450
           +++G +P+    RD+E  FK  +   R  ++ N     G   VEF    D  +A+     
Sbjct: 6   VYVGGLPYGVRERDLERFFK-GYGRTRDILIKN-----GYGFVEFEDYRDADDAV----- 54

Query: 451 YEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSR-----DRYNDRYQSSRRNDN 615
           YE  G+E+   +    P +    G  R R   YD R G R      RYN++ ++SR +  
Sbjct: 55  YELNGKELLGERVVVEPARGTARGSNRDR---YDDRYGGRRGGGGGRYNEKNKNSRSSSR 111

Query: 616 YAPPAPPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFGTVVFN 795
           Y PP    +    + + NL   V+WQ LKD MR AGEV  AD     +   R  G V F 
Sbjct: 112 YGPPL---RTEYRLIVENLSSRVSWQDLKDYMRQAGEVTYADA----HKQRRNEGVVEFA 164

Query: 796 TEEEAAKAVEMFQGYEIEGRKL---DXXXXXXXXXXXXYERDSYRSSDTTEKSSYGDRSK 966
           +  +   A+E     E+ GR++   +              R   RSS +  +S    RS+
Sbjct: 165 SLSDMKTAIEKLDDTELNGRRIHLVEDRRGGRSGGGGGSGRGRSRSSSSRSRSRSRRRSR 224

Query: 967 S 969
           S
Sbjct: 225 S 225



 Score = 46.6 bits (109), Expect = 7e-04
 Identities = 36/126 (28%), Positives = 57/126 (45%)
 Frame = +1

Query: 271 IFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNKGRSRGMATVEFNSKDDVREAINKFDR 450
           + + N+    + +D++D  ++   +  AD   +K R R    VEF S  D++ AI K D 
Sbjct: 122 LIVENLSSRVSWQDLKDYMRQAGEVTYAD--AHKQR-RNEGVVEFASLSDMKTAIEKLDD 178

Query: 451 YEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSRDRYNDRYQSSRRNDNYAPPA 630
            E  GR I + +D          G  RGR  +  SRS SR R   R + S  + + +   
Sbjct: 179 TELNGRRIHLVEDRRGGRSGGGGGSGRGRSRSSSSRSRSRSRRRSRSRRSSHSRSKSRSR 238

Query: 631 PPSKPG 648
             S+ G
Sbjct: 239 SKSRGG 244



 Score = 43.5 bits (101), Expect = 0.006
 Identities = 50/207 (24%), Positives = 77/207 (37%), Gaps = 1/207 (0%)
 Frame = +1

Query: 646  GTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFGTVVFNTEEEAAKAVE 825
            G+ V++G LP+ V  + L+   +  G     D+ + N     G+G V F    +A  AV 
Sbjct: 3    GSRVYVGGLPYGVRERDLERFFKGYGRT--RDILIKN-----GYGFVEFEDYRDADDAVY 55

Query: 826  MFQGYEIEGRKLDXXXXXXXXXXXXYERDSYRSSDTTEKSSYGDRSKSAVANKNSEFTDG 1005
               G E+ G ++               RD Y       +   G R      NKNS  +  
Sbjct: 56   ELNGKELLGERV--VVEPARGTARGSNRDRYDDRYGGRRGGGGGRYNE--KNKNSRSSSR 111

Query: 1006 VTADGEKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQYADDGRPSGN-AVVQFEIA 1182
                      + V NL       DL D     G     E+ YAD  +   N  VV+F   
Sbjct: 112  YGPPLRTEYRLIVENLSSRVSWQDLKDYMRQAG-----EVTYADAHKQRRNEGVVEFASL 166

Query: 1183 DLAENAILQLNNYLYGGRNLQISYAKR 1263
               + AI +L++    GR + +   +R
Sbjct: 167  SDMKTAIEKLDDTELNGRRIHLVEDRR 193


>Q9GQI7||Q9GQI7 (TrEMBL: Caenorhabditis elegans) SF2.
          Length = 258

 Score = 83.2 bits (204), Expect = 6e-15
 Identities = 75/239 (31%), Positives = 98/239 (41%), Gaps = 3/239 (1%)
 Frame = +1

Query: 262 DNSIFIGNIPFDCTSRDIEDIFKKDFSIVRADIVTNKGRSRGMATVEFNSKDDVREAINK 441
           D  +++GN+P D   +++EDIF K   I   DI    GR    A VEF    D  +A+  
Sbjct: 8   DQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDI--KSGRGPAFAFVEFEDHRDAEDAVRA 65

Query: 442 FDRYEYRGREIFVRQDYPPPEKKHDYGPPRGRGTTYDSRSGSRDRYNDRYQSSRRNDNYA 621
            D YE+ GR I V       E     GP   RG +        D     ++  R      
Sbjct: 66  RDGYEFDGRRIRV-------EFTRGVGP---RGPSGRPLQDGGDHRGGDFRGGRGGGRGG 115

Query: 622 PPAPPSKPGTEVFIGNLPFSVNWQALKDLMRDAGEVIRADVRLDNYGNSRGFGTVVFNTE 801
              P  + G  V +  LP + +WQ LKD MRDAG+V  ADV  D      G G V F   
Sbjct: 116 --GPQRRTGYRVIVEGLPPTGSWQDLKDHMRDAGDVCYADVARD------GTGVVEFTRY 167

Query: 802 EEAAKAVEMFQGYEIEGRKLDXXXXXXXXXXXXYERDSYRSSDTTEKSSYG---DRSKS 969
           E+   AV          RKLD            Y R   R  +++   S G   DRS+S
Sbjct: 168 EDVKYAV----------RKLDDTKFRSHEGETAYIR--VREDNSSGGGSGGGGRDRSRS 214



 Score = 43.9 bits (102), Expect = 0.004
 Identities = 23/81 (28%), Positives = 42/81 (51%)
 Frame = +1

Query: 1018 GEKSDTIYVANLPFATQDDDLYDLFETVGRTTKAEIQYADDGRPSGNAVVQFEIADLAEN 1197
            G +   +YV NLP   ++ ++ D+F   GR    +I+    GR    A V+FE    AE+
Sbjct: 5    GSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYVDIK---SGRGPAFAFVEFEDHRDAED 61

Query: 1198 AILQLNNYLYGGRNLQISYAK 1260
            A+   + Y + GR +++ + +
Sbjct: 62   AVRARDGYEFDGRRIRVEFTR 82


  Database: sptrembl
    Posted date:  Oct 14, 2003  6:47 PM
  Number of letters in database: 339,323,595
  Number of sequences in database:  1,070,300
  
Lambda     K      H
   0.314    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 315,982,555
Number of Sequences: 1070300
Number of extensions: 6414121
Number of successful extensions: 30893
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29969
length of database: 339,323,595
effective HSP length: 124
effective length of database: 206,606,395
effective search space used: 62188524895
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)