Query:  Candida_albicans_chr7-f2-137252-143053-45  

Scores for sequence family classification (score includes all domains):
Model        Description                                Score    E-value  N 
--------     -----------                                -----    ------- ---
pkinase      Protein kinase domain                      215.6    7.6e-61   1
PAS          PAS domain                                   2.2          7   1
response_reg Response regulator receiver domain          -5.4      0.021   1
EB1          EB1-like C-terminal motif                  -10.5        8.3   1
RIO1         RIO1 family                               -118.7         10   1
Podocalyxin  Podocalyxin                               -290.2        7.6   1

Parsed for domains:
Model        Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------     ------- ----- -----    ----- -----      -----  -------
PAS            1/1      92   156 ..     1    67 []     2.2        7
EB1            1/1     500   599 ..     1    56 []   -10.5      8.3
Podocalyxin    1/1     641  1027 ..     1   622 []  -290.2      7.6
RIO1           1/1     920  1071 ..     1   206 []  -118.7       10
pkinase        1/1     907  1380 ..     1   294 []   215.6  7.6e-61
response_reg   1/1    1815  1932 ..     1   125 []    -5.4    0.021

Alignments of top-scoring domains:
PAS: domain 1 of 1, from 92 to 156: score 2.2, E = 7
                   *->eelrailetPnPlpdpifvvDedGrilywNaaaeeltGlsreeviGk
                       +lr    +    p+ +  +D dG+i y +  +e + G + + ++++
  Candida_al    92    IDLRLASSN---NPTIVMELDLDGNIRYLSKNWEYIVGTNIKKIVNR 135  

                   ssllelvheedr.arvretlq<-*
                      + ++ ++d +++v ++     
  Candida_al   136 HISKIIIGNNDDdSQVFNIAI    156  

EB1: domain 1 of 1, from 500 to 599: score -10.5, E = 8.3
                   *->gLEkERDFYFsKLRdIEiLCQeT........................
                      +L++ + F F++L++I  LC e+   +++++++++    ++++++  
  Candida_al   500    ALMFSKKFPFGILQRIVELCDEAllvnppstnednilafspgsekal 546  

                   ..................hetensslvdvkLeLvkriqaILYATe..egf
                   +   +++  ++++   ++ ++++  l+  k+e + r+ +IL  +e+  ++
  Candida_al   547 nvvmsssfletsdvaikqLIEDTQELINDKMETLSRLVSILQFSEkiKHE 596  

                   ehp<-*
                   +++   
  Candida_al   597 VDT    599  

Podocalyxin: domain 1 of 1, from 641 to 1027: score -290.2, E = 7.6
                   *->MRppLaLSaLLLLqLLLlsppsLsqdksgspspgpspeTtktltdlt
                             S L        +     q  +   +p p +   ++ t  +
  Candida_al   641    -------SRLE-------TSNIKDQQQTQIEEPPPPQ---QQPTQNI 670  

                   tsTaqtpgssvAsklsstaPsstmpfgkAleaagStkptetsesSssPgp
                       q++        s t + +t+ +       +St + +    S+sP  
  Candida_al   671 QDNYQEQ------PISETLNLTTTTT------TASTLQAPKPHKSISPII 708  

                   tsyfweieeelNttsaqGgttadpvlt...dttqksgkstdttsdatltn
                   +                + t+++ v t+++++ + s +  ++ s++ l +
  Candida_al   709 SD---------------LLTPGENVITpkdILLKESKSYNTSMSASPLNR 743  

                   tasPsttmnsqssagdtvpsggkssdsitTaletstlgkseassqptdLp
                   + s++ t +   s  ++v++  +s d  +  +    l++s  ss+     
  Candida_al   744 SGSSLCT-PRPQSMVAPVSTSNSSRDLLESIQ---VLDLSKRSSE----- 784  

                   tsgklespptTdktflslvtsppqpvdfsptslsqskGqhtsvevsSsSF
                   ++++ +s p+   ++     +pp  v+ s +++ q   + t+ +++S   
  Candida_al   785 NNSQYSS-PRRHLSP-----APPPYVEKSNLTTLQKNTAATPIASPSLT- 827  

                   LDkassvvsStsnttpslkltTltPtgtSpgtQpstSqtPgittlPsstl
                                 + s  +tT t  g   g  +  +   +  t   s++
  Candida_al   828 ---------TMEDINASATTTTTTNIGGYGGLGDKKITHLSLNTQVPSQP 868  

                   lvspeSPqgalevpTteeaGkaayTsrGdtSstheeaptapsgPsTpsPT
                    + ++S+++    +T                +++ +++t ++ P   ++T
  Candida_al   869 SSAMSSSVKS---ATIRPP------------LSPLLVSTQQPQPR--LST 901  

                   wAlgdyedplgsrtsaSsVSPPNevkCeppirPtqsEelLILNLTreslC
                   +  +dy                                            
  Candida_al   902 GGIRDY-------------------------------------------- 907  

                   iHvFqRqsqGEGEtEismdgspsdseEkLleLlCravKatFnPaqDaChi
                                                      + K+  ++a ++  +
  Candida_al   908 ----------------------------------QVIKPISKGAFGS--V 921  

                   kLAKPildnQavvvkeIiihtkLpPkAVfElLKDkWddLeEaGVsDYSmt
                    L K  l    v++k                LK k+d   +  V +  ++
  Candida_al   922 FLGKRKLTGDYVAIK---------------CLK-KRDMIAKNQVLN--VK 953  

                   lgdQgppEeveDrFSlPLIITIVcmAsfLLLVALGALYGCCHQRlSqrKD
                   +    +  +  + +                 VA   LY   + R     D
  Candida_al   954 SERAVMMRQSDSPY-----------------VA--QLYSSFQSR-----D 979  

                   QqRLTEELQTVENGYHDNPTLEVMETsSEMQEKKVVsLNGE........L
                                 Y       VME            LNG++  +  ++L
  Candida_al   980 YL------------YL------VME-----------YLNGGdcanllktL 1000 

                   GLNGPDSWIVPLDnLtKeDldeSDVFEEDTHRnLsL<-*
                   G  G D W       t +   e  V   D H n      
  Candida_al  1001 GVIGVD-W-------TPRYIAEIIVGVDDLH-NRGI    1027 

RIO1: domain 1 of 1, from 920 to 1071: score -118.7, E = 10
                   *->nVYhAvsyaedgedevAvKiyr....tgtteFkkrkkYrdgdfRFrd
                       V+ +      g+ +vA+K  ++++ +  ++  ++k  r    R   
  Candida_al   920    SVFLGKR-KLTGD-YVAIKCLKkrdmIAKNQVLNVKSERAVMMR--- 961  

                   rksktswrklvrlWAeKEfrNLkRLyeaGvpVPkPiavnrhvLVMEfIgd
                      +++  ++++l         +  + +       +++    LVME++  
  Candida_al   962 ---QSDSPYVAQL--------YSSFQSRD------YLY----LVMEYLN- 989  

                   edGvpAPrLkdvelelslseeeaeelYdeiirEymrrlYkeagLVHGDLS
                     G+ A  Lk +        +  +++ +eii   +  l  + g++H DL 
  Candida_al   990 -GGDCANLLKTLGV---IGVDWTPRYIAEIIV-GVDDLH-NRGIIHRDLK 1033 

                   EYNiLvhddgkpviIDvsQaVetdHPnAlefLeRDieNIinFFrrkgvdk
                     NiL++++g++ + D++                         +r gv  
  Candida_al  1034 PDNILIDKNGHLKLTDFG------------------------LSRLGVVG 1059 

                   rvvdvrelfeyit<-*
                    + ++ + ++  t   
  Candida_al  1060 -RQQTQQHRKSST    1071 

pkinase: domain 1 of 1, from 907 to 1380: score 215.6, E = 7.6e-61
                   *->yelleklGeGsfGkVykakhkdktgkiVAvKilkkekesikek....
                      y++++++ +G+fG+V+++k+k  tg  VA+K+lk  k+++ +k++  
  Candida_al   907    YQVIKPISKGAFGSVFLGKRK-LTGDYVAIKCLK--KRDMIAKnqvl 950  

                   rflrEiqilkrLs.HpNIvrligvfedtddhlylvmEymegGdLfdylrr
                   ++ +E +++ r s+ p++ +l+ +f+ + d+lylvmEy++gGd +++l+ 
  Candida_al   951 NVKSERAVMMRQSdSPYVAQLYSSFQ-SRDYLYLVMEYLNGGDCANLLKT 999  

                   nggplsekeakkialQilrGleYLHsngivHRDLKpeNILldendgtvKi
                    g +++ ++  +++ +i  G++ LH++gi+HRDLKp+NIL+d+n g++K+
  Candida_al  1000 LG-VIGVDWTPRYIAEIIVGVDDLHNRGIIHRDLKPDNILIDKN-GHLKL 1047 

                   aDFGLArlle..............................sssklttfvG
                   +DFGL+rl + +++++++++++++++++ +  ++  ++++++ k + + G
  Candida_al  1048 TDFGLSRLGVvgrqqtqqhrksstneqgielfrsmlseesNQKKVNPGIG 1097 

                   TpwYmmAPEvi.......................................
                   Tp+   +P + +++ + +++++++++++ + + ++ ++ ++   +++   
  Candida_al  1098 TPFSL-SPSLEqsrvsfnsqqqqqqqqqmgvpagnapsvsslaagenfvl 1146 

                   ..................................................
                   ++++++    ++ ++ ++ +++++ +++++++++++++  ++++++++++
  Candida_al  1147 sstsptlaylesfnslssvstptgatqqqqqqqpppkpfvkssngrsgss 1196 

                   ..................................................
                   + +++  ++  ++++++++    +++++++++++    ++++ ++++ + 
  Candida_al  1197 gfdspilkpiiprtesessfaimddepspgpttdyalynpdnyknegata 1246 

                   ........................................legrgysskv
                   ++ +  + +++++++ + +++++ + ++  ++++   ++ ++g+g    +
  Candida_al  1247 ttataatagtggggdvnagdggganikkfvgtpdylapeiIKGSGENESS 1296 

                   DvWSlGviLyElltggplfpgadlpaftggdevdqliifvlklPfsdelp
                   D+ S+Gvi++E l+g                           +Pf+    
  Candida_al  1297 DWFSVGVIMFEFLYG--------------------------YPPFHA--- 1317 

                   ktridpleelfriikrpglrlplpsncSee........lkdLlkkcLnkD
                       d+ e++f+ i+   +++++p++ +ee+ +  ++++kdL++k+L ++
  Candida_al  1318 ----DTPEKVFNNILS--GKIDWPELTPEEdmkfcppdAKDLINKLLVMN 1361 

                   PskRpG.satakeilnhpwf<-*
                   P++R+G    a ei+nhp+f   
  Candida_al  1362 PEERLGfN-GADEIKNHPYF    1380 

response_reg: domain 1 of 1, from 1815 to 1932: score -5.4, E = 0.021
                   *->mkvLiVDDdplirellrqlLedesGyeVvaaadedGeeAlellkelk
                      + vL ++   +ir  +++lLe++ G+ Vv ++d  Gee++++   + 
  Candida_al  1815    LDVLYCEPISVIRHSVVKLLEKA-GCIVVSVTD--GEELIKRATSQV 1858 

                   gpDlillDinMPgmdGlellkrir...rrdptlpiPViilTahgdeedav
                    +Dli++ + + ++d +++ k i+ ++ ++  +pi  i +T + ++ d  
  Candida_al  1859 KFDLIFTGLKISKVDAIDAVKLIKftsGKNRNTPI--IGITENKNKID-D 1905 

                   ealqaGAddflsKPfdpdeLlaairaalrg.r<-*
                   +      +d++  P      l+ai +++r  r   
  Candida_al  1906 DITTSSTFDYIIEP-----NLEAISKVCRIlR    1932 

//