Query:  Candida_albicans_chr7-f2-92414-95923-44  

Scores for sequence family classification (score includes all domains):
Model          Description                              Score    E-value  N 
--------       -----------                              -----    ------- ---
RNA_pol_Rpb2_6 RNA polymerase Rpb2, domain 6            600.9   7.8e-177   1
RNA_pol_Rpb2_2 RNA polymerase Rpb2, domain 2            154.3    2.1e-42   1
RNA_pol_Rpb2_3 RNA polymerase Rpb2, domain 3            112.5    8.3e-30   1
RNA_pol_Rpb2_1 RNA polymerase beta subunit               92.7    7.6e-24   1
RNA_pol_Rpb2_7 RNA polymerase Rpb2, domain 7             45.7      1e-09   1
RNA_pol_Rpb2_5 RNA polymerase Rpb2, domain 5             28.6    0.00014   1
Orthopox_C1    Orthopoxvirus C1 protein                 -75.5        9.8   1

Parsed for domains:
Model          Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------       ------- ----- -----    ----- -----      -----  -------
RNA_pol_Rpb2_2   1/1     194   383 ..     1   223 []   154.3  2.1e-42
RNA_pol_Rpb2_1   1/1      33   448 ..     1   226 []    92.7  7.6e-24
Orthopox_C1      1/1     292   495 ..     1   214 []   -75.5      9.8
RNA_pol_Rpb2_3   1/1     463   532 ..     1    74 []   112.5  8.3e-30
RNA_pol_Rpb2_5   1/1     630   671 ..     1    77 []    28.6  0.00014
RNA_pol_Rpb2_6   1/1     676  1042 ..     1   417 []   600.9 7.8e-177
RNA_pol_Rpb2_7   1/1    1044  1167 ..     1    92 []    45.7    1e-09

Alignments of top-scoring domains:
RNA_pol_Rpb2_2: domain 1 of 1, from 194 to 383: score 154.3, E = 2.1e-42
                   *->rsngiyvekeldkngiyaEvRsqaesssgllsatytsslisnrgswl
                      r+n+++   ++++++     R++++   g+++++++++++s++++ +
  Candida_al   194    RRNHPMAIIRPSFGN-----RGASYTKFGIQIRSVRPDQTSQTNVLH 235  

                   klekdgktliwtrpsikrkIPivivLrALGlvsDrEILdricYnsfvaed
                   +l+++  t+++++++++  +P+v++L+AL  ++DrEI+d+i+ +++   +
  Candida_al   236 YLNDGNVTFRFSWRKNEFLVPVVMILKALIETNDREIFDGIV-GNDTENS 284  

                   fndpqmleelkpeleeaeniytqeeALdyIGkHFkfRgvalgrgeekriq
                   f++++  +el++++ +  n+y+q+e L y+G+  kfR+v+ ++++  +i+
  Candida_al   285 FLTDR--LELLLRTYKTYNLYSQQETLAYLGD--KFRVVFGASPDMSDIE 330  

                   rareiLqsrfFDpkRYdLGivGRenLnkHLglnepfenkrvlKaqdilym
                   +++e+L                R++L+ HL  n +       K++++l+m
  Candida_al   331 VGKEVLK---------------RIVLV-HLPNNAD-------KFRMLLFM 357  

                   idrLLllklGrrepDDiDHlgNKRvr<-*
                   i++L++l  G + pD++D +++++v+   
  Candida_al   358 IRKLYSLVAGDCAPDNPDATQHQEVL    383  

RNA_pol_Rpb2_1: domain 1 of 1, from 33 to 448: score 92.7, E = 7.6e-24
                RF    xxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxx
                   *->glveqqldsfnefleeglqeile.eakkiesekeaqyateeeeaele
                      + v  ++ sfn++++      l+ + k+i s++  +  +++ +  ++
  Candida_al    33    DAVAPHVGSFNALMDGPDGGLLNlAVKDIGSKTIFDTPETSGRLGNK 79   

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   lelkveqiklkkpkvkedvadakekellPkearlrnltYsselyvdvels
                   l++ v++++l+kp+v ++ +   +++++P+e+r r +tY+s+l ++v++s
  Candida_al    80 LKIRVDSVQLAKPSVPANDKLSLNRKTFPSECRERMVTYRSRLMLNVTWS 129  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   vkkkeekaevkkeekekekvfigklPimlrskacilseleeeelvelkee
                   v+++         e+ +e  + g++Piml+s++c+l++l+ ++lve kee
  Candida_al   130 VNDE---------EEVSEVREAGQIPIMLKSNRCHLEKLSPNQLVEAKEE 170  

                RF xxxxxxxxxxxxxxxxxxxxxxx                           
                   sldqggyFivngsekvivaqikr...........................
                   s + ggyFivng+ek+i + i+++++++    +++ ++++ + ++ + + 
  Candida_al   171 SDELGGYFIVNGIEKLIRMLIVQrrnhpmaiirpsfgnrgasytkfgiqi 220  

                RF                                                   
                   ..................................................
                   ++ +++++++++  +  ++++ + + + ++++   +     +   +++++
  Candida_al   221 rsvrpdqtsqtnvlhylndgnvtfrfswrkneflvpvvmilkalietndr 270  

                RF                                                   
                   ..................................................
                   +  ++  +++++++  +++ +   ++ ++ +  +++++    +++ +   
  Candida_al   271 eifdgivgndtensfltdrlelllrtyktynlysqqetlaylgdkfrvvf 320  

                RF                                                   
                   ..................................................
                   + +++ ++ + +++  ++    + +++ ++ +      ++  +   ++  
  Candida_al   321 gaspdmsdievgkevlkrivlvhlpnnadkfrmllfmirklyslvagdca 370  

                RF                     xxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   ....................ellqsllrvllkklekevreklqkllkkkk
                   +++++ +++++   ++   +++++++++++l++++ ++++++++ +  + 
  Candida_al   371 pdnpdatqhqevllggflygMIIKEKIEEYLQNIKLQIQSDINRGVGINF 420  

                RF x xxxxxxxxxxxxxxxxxxxxxxxxxx   
                   k.kelklkklvksaktitealkeflatg<-*
                    +++++++++ + +++i ++l++fl+tg   
  Candida_al   421 DdRKYMTRVFSRINENIGQKLQYFLSTG    448  

Orthopox_C1: domain 1 of 1, from 292 to 495: score -75.5, E = 9.8
                   *->mimstdpnniLmRhLKnLt..DDeFKCiiHrssDFLYLsDrDYtsit
                      ++++t     L      L    D+F+ +   s D   +sD +   + 
  Candida_al   292    LLLRTYKTYNLYSQQETLAylGDKFRVVFGASPD---MSDIE---VG 332  

                   KEtLvsEivEEYPDDCnKiLAiiFLv..LDKDiDvDiEtKL..tpkPKPA
                   KE L   +    P    K   ++F++++L   +  D     +++ + +  
  Candida_al   333 KEVLKRIVLVHLPNNADKFRMLLFMIrkLYSLVAGDCAPDNpdATQHQEV 382  

                   vRfAiLDKmtkDiKLtDLvRHYFRYiEqDiPLGPLFKKiD.sYRiRAink
                        L  m    K+ +        i  Di  G      D+ Y +R   +
  Candida_al   383 LLGGFLYGMIIKEKIEEYLQNIKLQIQSDINRGVGINFDDrKYMTRVFSR 432  

                   YsKELGLAtEYFnkYGHLmFYtLPiPYnRFFCRnsiGFLAvLsPtiGhvK
                       +G    YF   G L+                +    v   t+   K
  Candida_al   433 INENIGQKLQYFLSTGNLV------------SQSGLDLQQVSGYTVVAEK 470  

                   A.FYKFiEYvsidDRRKFKKELmsK<-*
                    +FY+Fi    +  R  F  EL      
  Candida_al   471 InFYRFISHFRMVHRGSFFAELKTT    495  

RNA_pol_Rpb2_3: domain 1 of 1, from 463 to 532: score 112.5, E = 8.3e-30
                   *->glsQvldqtNplselshkRrvsrlGPGglsrerktfevRdlhpsqyG
                      g ++v++++N+ +++sh+R+v+r   G++++e kt++vR+l+p+++G
  Candida_al   463    GYTVVAEKINFYRFISHFRMVHR---GSFFAELKTTTVRKLLPESWG 506  

                   riCPieTPErGqncGLvnsLalyarin<-*
                   ++CP++TP+ G++cGL+n+L++ ++i    
  Candida_al   507 FLCPVHTPD-GSPCGLLNHLSHKCKIA    532  

RNA_pol_Rpb2_5: domain 1 of 1, from 630 to 671: score 28.6, E = 0.00014
                   *->wddLlkeGPHvvEYlDaEEEEtamIAmtpeDLesrqmkagyeieeed
                      ++++l     + + ++++E++++++A+tp                  
  Candida_al   630    PVKYLPLD--KEDIVGPFEQVYMNVAVTP------------------ 656  

                   edpgiednrRvkpkpneeithtyTHcEIhP<-*
                                  +e++++ + H+E+ P   
  Candida_al   657 ---------------EEIENNIHSHVEFTP    671  

RNA_pol_Rpb2_6: domain 1 of 1, from 676 to 1042: score 600.9, E = 7.8e-177
                RF    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   *->gvvAsliGfvehnqSprityqcamgKqaigypllnyqiRsDqgtcll
                      ++ A+l++f+++nqSpr++yqc+mgKq++g+p + + +RsD+++++l
  Candida_al   676    SILANLTPFSDFNQSPRNMYQCQMGKQTMGTPGTALVHRSDNKLYRL 722  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   qyPqvplvetvtkgqilaDGPatenGelplGqNalVAvmsyeGYNyEDAi
                   q+ q p+v+   ++++++D       ++p+G Na+VAv+sy+GY++ DA+
  Candida_al   723 QTGQTPIVKANLYDDYGMD-------NFPNGMNAIVAVISYTGYDMDDAM 765  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxx   xxxxxxxxxxxxxxxxxx
                   iiNkrlvergvytSihieeyeiearktkl...ggpEeitrpipnvrggvs
                   iiNk++ erg++ +++++++++++++   ++++  + +++  ++    + 
  Candida_al   766 IINKSADERGFGYGTVYKTEKVDLSQSRRrgdPITQHFGFGSDE----WP 811  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   eaalrkLDedGivrvGaeVkpGDiLvGKvtPkgeleetpEekLlraIFGe
                   ea+++kLD+dG++ +G +V++GD++v + + +  +               
  Candida_al   812 EAWKEKLDADGLPLIGVKVEEGDPIVAYYDDTLGK--------------- 846  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   KiqvardvRdtSlrvphgekGiVddVrlftrekgdelndegngvnklvkV
                            ++  ++ ++e+++++ V+l+        +d+  ++ + + +
  Candida_al   847 ---------TKVKTYHSSEPAYIEEVKLLG-------DDSNEQEGQQITI 880  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   yvrqkRkpqiGDKfAsRHGqKGViSkIvPqeDMPFledGtppDIIlNPhG
                   + r +R+p iGDKf+sRHGqKGV+S+ +Pq DMPF+e+G+ pD+I+NPh+
  Candida_al   881 KYRITRQPLIGDKFSSRHGQKGVCSRKWPQIDMPFTESGMQPDVIINPHA 930  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   vPSRMtiGQllEcllGkAgallGkrvdgtpFdepvfdeasvedisekLke
                   +PSRMtiG+  E+l+GkAgal+G+ +d+tp++++++d ++ ++++e+L +
  Candida_al   931 FPSRMTIGMFVESLAGKAGALHGIAQDSTPWKFNEQD-TPADYFGEQLLK 979  

                RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
                   aGfnysgWlFeepnhpGKevLYDGrTGepfeapIfvGviYYqKLkHMVdD
                   aG+ny+g          +e +Y+G TGe++ ++I++G +YYq+L+HMV D
  Candida_al   980 AGYNYHG----------NEPMYSGATGEELRCDIYIGCVYYQRLRHMVND 1019 

                RF xxxxxxxxxxxxxxxxxxxxxxx   
                   KiHARStGPysllTqQPlgGRar<-*
                   K+++RStGP++ lT QP++GR+r   
  Candida_al  1020 KFQVRSTGPVNSLTMQPVKGRKR    1042 

RNA_pol_Rpb2_7: domain 1 of 1, from 1044 to 1167: score 45.7, E = 1e-09
                   *->GGqRFGEMEvWaLeAyGAAytLqErLtikSDayevdvcgrcgayaaa
                      GG R+GEME++aL+++G + +Lq+rL+  SD ++  vc+ cg +   
  Candida_al  1044    GGIRVGEMERDALIGHGTSFLLQDRLLNCSDYTQTPVCRSCGSILTT 1090 

                   nkr................................kn.yeCrickgktii
                     + ++ ++  + + ++   + ++ ++   +++   ++   + + g++  
  Candida_al  1091 QTSvprigsmasircrrcavgldkyegyaadsdiwEDgHGKKFVGGDD-T 1139 

                   epgtiPEsFKlLlqELqSLgldirlyle<-*
                     + iP   K L  EL ++g+ +r  +e   
  Candida_al  1140 TTVAIPFVLKYLDSELSAMGIKMRYNVE    1167 

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